Skip to main content
Log in

Recent progress in chromosome painting of Arabidopsis and related species

  • Published:
Chromosome Research Aims and scope Submit manuscript

Abstract

This paper reports on state-of-the-art achievements of chromosome painting in Arabidopsis thaliana (2n = 10). Arabidopsis chromosomes 1, 2 and 4 were painted using chromosome-specific BAC contigs. We consider technical aspects of the painting approach and document major applications, such as the tracing of Arabidopsis chromosomes as interphase chromosome territories and during mitotic and meiotic cell cycles as well as comparative chromosome painting in related species. This is the first report of successful interspecific chromosome painting in plants. The evolutionary history of chromosomes homeologous to Arabidopsis chromosome 4 was reconstructed by hybridization of chromosome-4-specific painting probes to karyotypes of Brassicaceae species with x = 8 chromosomes. Future perspectives of chromosome painting in A. thaliana and its wild relatives are outlined.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Acarkan A, Rossberg M, Koch M, Schmidt R (2000) Comparative genome analysis reveals extensive conservation of genome organisation for Arabidopsis thaliana and Capsella rubella. Plant J 23: 55‐62.

    Google Scholar 

  • Aragón‐Alcaide L, Reader S, Beven A, Shaw P, Miller T, Moore G (1997) Association of homologous chromosomes during floral development. Curr Biol 7: 905‐908.

    Google Scholar 

  • Chowdhary BP, Raudsepp T( 2001) Chromosome painting in farm, pet and wild animal species. Meth Cell Sci 23: 37‐55.

    Google Scholar 

  • Cremer T, Cremer C (2001) Chromosome territories, nuclear architecture and gene regulation in mammalian cells. Nature Rev Genet 2: 292‐302.

    Google Scholar 

  • Cremer M, von Hase J, Volm T et al. (2001)Non‐random radial higher‐order chromatin arrangements in nuclei of diploid human cells. Chromosome Res 9: 541‐567.

    Google Scholar 

  • Csink AK, Henikoff S (1998) Large‐scale chromosomal movements during interphase progression in Drosophila. J Cell Biol 143: 13‐22.

    Google Scholar 

  • Ferguson‐Smith MA (1997) Genetic analysis by chromosome sorting and painting: phylogenetic and diagnostic applications. Eur J Hum Genet 5: 253‐265.

    Google Scholar 

  • Fransz P, Armstrong S, Alonso‐Blanco C, Fischer TC, Torres‐Ruiz RA, Jones G (1998) Cytogenetics for the model system Arabidopsis thaliana. Plant J 13: 867‐876.

    Google Scholar 

  • Fransz PF, Armstrong S, de Jong JH et al. (2000) Integrated cytogenetic map of chromosome arm 4S of A. thaliana: structural organization of heterochromatic knob and centromere region. Cell 100: 367‐376.

    Google Scholar 

  • Fransz PF, de Jong JH, Lysak M, Ruffini Castiglione M, Schubert I (2002) Interphase chromosomes in Arabidopsis are organised as well‐defined chromocenters from which euchromatin loops emanate. Proc Natl Acad Sci USA 99: 15484‐15489.

    Google Scholar 

  • Fuchs J, Houben A, Brandes A, Schubert I (1996) Chromosome 'painting' in plants–a feasible technique? Chromosoma 104: 315‐320.

    Google Scholar 

  • Habermann FA, Cremer M, Walter J et al. (2001) Arrangements of macro‐and microchromosomes in chicken cells. Chromosome Res 9: 569‐584.

    Google Scholar 

  • Hiraoka Y, Dernburg AF, Parmelee SJ, Rykowski MC, Agard DA, Sedat JW (1993) The onset of homologous chromosome pairing during Drosophila melanogaster embryogenesis. J Cell Biol 120: 591‐600.

    Google Scholar 

  • Jackson SA, Cheng Z, Wang ML, Goodman HM, Jiang J (2000) Comparative Luorescence in situ hybridization mapping of a 431‐kb Arabidopsis thaliana bacterial artificial chromosome contig reveals the role of chromosome duplications in the expansion of the Brassica rapa genome. Genetics 156: 833‐838.

    Google Scholar 

  • Koch M, Bishop J, Mitchell‐Olds T( 1999) Molecular systematics and evolution of Arabidopsis and Arabis. Plant Biol 1: 529‐537.

    Google Scholar 

  • Koch M, Haubold B, Mitchell‐Olds T( 2001) Molecular systematics of the Brassicaceae: evidence from coding plastidic matK and nuclear Chs sequences. AmJ Bot 88: 534‐544.

    Google Scholar 

  • Leutwiler LS, Hough‐Evans BR, Meyerowitz EM (1984) The DNA of Arabidopsis thaliana. Mol Gen Genet 194: 15‐23.

    Google Scholar 

  • Lysak MA, Fransz PF, Ali HBM, Schubert I (2001) Chromosome painting in Arabidopsis thaliana. Plant J 28: 689‐697.

    Google Scholar 

  • Mummenhoff K, Hurka H (1990) Evolution of the tetraploid Capsella bursa‐pastoris (Brassicaceae): isoelectric focusing analysis of Rubisco. Plant Syst Evol 172: 205‐213.

    Google Scholar 

  • Pinkel D, Landegent J, Collins C et al. (1988) Fluorescence in situ hybridization with human chromosome‐specicc libraries: Detection of trisomy 21 and translocations of chromosome 4. Proc Natl Acad Sci USA 85: 9138‐9142.

    Google Scholar 

  • Price RA, Palmer JD, Al‐Shehbaz IA (1994) Systematic relationships of Arabidopsis: a molecular and morphological perspective. In: Meyerowitz EM, Somerville CR, eds. Arabidopsis. Cold Spring Harbor: Cold Spring Harbor Lab. Press, pp 7‐19.

    Google Scholar 

  • Schmidt R, Acarkan A, Boivin K (2001) Comparative structural genomics in the Brassicaceae family. Plant Physiol Biochem 39: 253‐262.

    Google Scholar 

  • Scholl RL, May ST, Ware DH (2000) Seed and molecular resources for Arabidopsis. Plant Physiol 124: 1477‐1480.

    Google Scholar 

  • Schubert I, Fransz PF, Fuchs J, de Jong JH (2001) Chromosome painting in plants. Meth Cell Sci 23: 57‐69.

    Google Scholar 

  • Schwarzacher T, Anamthawat‐Jónsson K, Harrison GE et al. (1992) Genomic in situ hybridization to identify alien chromosomes and chromosome segments in wheat. Theor Appl Genet 84: 778‐786.

    Google Scholar 

  • Schwarzacher T, Wang ML, Leitch AR, Miller N, Moore G, Heslop‐Harrison JS (1997) Flow cytometric analysis of the chromosomes and stability of a wheat cell‐culture line. Theor Appl Genet 94: 91‐97.

    Google Scholar 

  • The Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796‐815.

    Google Scholar 

  • Ziolkowski PA, Sadowski J (2002) FISH‐mapping of rDNAs and Arabidopsis BACs on pachytene complements of selected Brassicas. Genome 45: 189‐197.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Ingo Schubert.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Lysak, M.A., Pecinka, A. & Schubert, I. Recent progress in chromosome painting of Arabidopsis and related species. Chromosome Res 11, 195–204 (2003). https://doi.org/10.1023/A:1022879608152

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1023/A:1022879608152

Navigation