Skip to main content
Log in

Higher-order organization and compartmentalization of satellite DNA PIM357 in species of the coleopteran genus Pimelia

  • Published:
Chromosome Research Aims and scope Submit manuscript

Abstract

The PIM357 satellite DNA family is present in 26 Pimelia taxa (Tenebrionidae, Coleoptera) with endemic congeneric species from the Canary Islands showing higher interrepeat variability than continental ones. In this paper, we compare the repetitive DNA sequences of a Canarian species that has distinct subfamilies of repeat units, P. radula ascendens, with another without such subfamilies, P. sparsa sparsa. The chromosomal localization of the repeat units and the comparison of the variability of randomly cloned monomers to the one estimated by comparing repeat units from dimers and trimers suggest the absence of satellite subfamilies in P. sparsa sparsa. Hence, the repeat units of this species seem to be uniformly and randomly distributed throughout all chromosomes out of one chromosomal pair. On the contrary, P. radula ascendens shows four divergent subfamilies of repeat units supported by several diagnostic nucleotide substitutions. These subfamilies seem to form four distinct repeat units: monomer subfamily 1, monomer subfamily 4 and two higher-order units (dimer linking subfamily 1 and 4, and dimer linking subfamily 2 and 3). Moreover, monomers of subfamily 1 are present in three chromosomal pairs only. We discuss the effect of different potential factors acting in the concerted evolution and the genomic organization of stDNA sequences in these taxa.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Biessmann H, Zurovcova M, Yao JG, Lozovskaya E, Walter MF (2000) A telomeric satellite in Drosophila virilis and its sibling species. Chromosoma 109: 372-380.

    PubMed  CAS  Google Scholar 

  • Bruvo B, Plohl M, Ugarkovic D (1995) Uniform distribution of satellite DNA variants on chromosomes of tenebrionid species Alphitobius diaperinus and Tenebrio molitor. Hereditas 123: 69-75.

    Article  PubMed  CAS  Google Scholar 

  • Chaves R, Guedes-Pinto H, Heslop-Harrison J, Schwarzacher T (2000) The species and chromosomal distribution of the centromeric alpha-satellite I sequence from sheep in the tribe Caprini and other Bovidae. Cytogenet Cell Genet 91: 62-66.

    Article  PubMed  CAS  Google Scholar 

  • Cox CB, Moore PD (1993) Biogeography: An Ecological and Evolutionary Approach. Oxford: Blackwell Science Ltd.

    Google Scholar 

  • DeSalle R, Templeton AR (1988) Founder effects and the rate of mitochondrial DNA evolution in Hawaiian Drosophila. Evolution 42: 1076-1084.

    Article  Google Scholar 

  • Do GS, Seo BB, Yamamoto M, Suzuki G, Mukai Y (2001) Identification and chromosomal location of tandemly repeated DNA sequences in Allium cepa. Genes Genet Syst 76(1): 53-60.

    Article  PubMed  CAS  Google Scholar 

  • Dover G (1986) Molecular drive in multigene families: how biological novelties arise, spread and are assimilated. Trends Genet 2: 159-165.

    Article  CAS  Google Scholar 

  • Elder F, Turner BJ (1995) Concerted evolution of repetitive DNA sequences in eukaryotes. Quart Rev Biol 70(3): 297-323.

    Article  PubMed  CAS  Google Scholar 

  • Greig GM, Warburton PE, Willard HF (1993) Organization and evolution of an alpha satellite DNA subset shared by human chromosomes 13 and 21. J Mol Evol 37(5): 464-475.

    Article  PubMed  CAS  Google Scholar 

  • Higgins DG, Thompson JD, Gibson TJ (1996) Using clustal for multiple sequence alignments. Meth Enzymol 266: 383-402.

    Article  PubMed  CAS  Google Scholar 

  • Juan C, Pons J, Petitpierre E (1993) Localization of tandemly repeated DNA sequences in beetle chromosomes by fluorescent in situ hybridisation. Chromosome Res 1: 167-174.

    Article  PubMed  CAS  Google Scholar 

  • Juan C, Oromí P, Hewitt GM (1995) Mitochondrial DNA phylogeny and sequential colonization of Canary Islands by darkling beetles of the genus Pimelia (Tenebrionidae). Proc R Soc B 261: 173-180.

    PubMed  CAS  Google Scholar 

  • Juan C, Ibrahim KM, Oromí P, Hewitt GM (1996) Mitochondrial DNA sequence variation and phylogeography of Pimelia darkling beetles on the island of Tenerife (Canary Islands). Heredity 77: 589-598.

    PubMed  CAS  Google Scholar 

  • Nietzel A, Rocchi M, Starke H et al. (2001) A new multicolor-FISH approach for the characterization of marker chromosomes: centromere-specific multicolor-FISH (cenM-FISH). Hum Genet 108(3): 199-204.

    Article  PubMed  CAS  Google Scholar 

  • Plohl M, Borstnik B, Lucijanic-Justic V, Ugarkovic D (1992) Evidence for random distribution of sequence variants in Tenebrio molitor satellite DNA. Genet Res 60: 7-13.

    Article  PubMed  CAS  Google Scholar 

  • Plohl M, Mestrovic N, Bruvo B, Ugarkovic D (1998) Similarity of structural features and evolution of satellite DNAs from Palorus subdepressus (Coleoptera) and related species. J Mol Evol 46: 234-239.

    Article  PubMed  CAS  Google Scholar 

  • Pons J (1999) Evolucion del DNA Satelite en el Genero Pimelia. PhD Thesis. University of Balearic Islands, Palma de Mallorca (Spain).

    Google Scholar 

  • Pons J, Petitpierre E, Juan C (2002) Evolutionary dynamics of satellite DNA family PIM357 in species of the genus Pimelia (Tenebrionidae, Coleoptera). Mol Biol Evol 19(8): 1329-1340.

    PubMed  CAS  Google Scholar 

  • Rozas J, Rozas (1997) DnaSP version 2.0 a novel software package for extensive molecular population genetic analysis. Comput Applic Biosci 13: 307-311.

    CAS  Google Scholar 

  • Smith GP (1976) Evolution of repeated DNA sequences by unequal crossover. Science 191: 528-535.

    PubMed  CAS  Google Scholar 

  • Sumner AT (1972) A simple technique for demonstrating centromeric heterochromatin. Exp Cell Res 75: 304-306.

    Article  PubMed  CAS  Google Scholar 

  • Swofford DL (1999) PAUP*. Phylogenetics Analysis Using Parsimony (*and other methods). Version 4. Sunderland, MA: Sinauer Associates.

    Google Scholar 

  • Trick M, Dover G (1984) Unexpectedly slow homogenisation within a repetitive DNA family shared between two species of tsetse fly. J Mol Evol 20: 322-329.

    Article  PubMed  CAS  Google Scholar 

  • Willard HF, Wayne JS (1987) Hierarchical order in chromosome-specific human alpha satellite DNA. Trends Genet 3: 192-198.

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Pons, J., Juan, C. & Petitpierre, E. Higher-order organization and compartmentalization of satellite DNA PIM357 in species of the coleopteran genus Pimelia . Chromosome Res 10, 597–606 (2002). https://doi.org/10.1023/A:1020918803675

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1023/A:1020918803675

Navigation