Skip to main content
Log in

The β-tubulin Gene is a Useful Target for PCR-based Detection of an Albino Ophiostoma piliferum Used in Biological Control of Sapstain

  • Published:
European Journal of Plant Pathology Aims and scope Submit manuscript

Abstract

The potential of Cartapip™, an albino Ophiostoma piliferum, as a biocontrol agent against sapstain in logs has been tested in Germany. To detect the albino strain in field-tested wood, the usefulness of the β-tubulin gene as a target region for developing PCR-based assays was evaluated with 102 strains of O. piliferum and 31 strains of other wood-inhabiting species. A partial β-tubulin gene sequence of O. piliferum strains from different geographic origins was amplified by PCR and analyzed by restriction enzyme digestions and DNA sequencing. Variation in size and nucleotide sequences was found in intron regions indicating that intraspecific variation is present in the β-tubulin gene. Consequently, β-tubulin gene-derived PCR methods using PCR–RFLP patterns generated by HinfI and SpeI and sequence-specific primers Cat1 and Cat2, were developed and their specificity for Cartapip™ was accessed with field-tested logs and lumber. The β-tubulin gene-based PCR methods were found to be valuable tools for rapid and reliable identification of Cartapip™ in field-tested logs and lumber in Germany. Specificity tests against other wood-inhabiting species and wild type O. piliferum strains from diverse nations showed that the Cat1 and Cat2 primers have potential to be used in other European countries, New Zealand, Alberta and British Columbia.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Behrendt CJ, Blanchette RA and Farrell RL (1995a) Biological control of blue-stain fungi in wood. Phytopathology 85: 92–97

    Google Scholar 

  • Behrendt CJ, Blanchette RA and Farrell RL (1995b) An integrated approach, using biological and chemical control, to prevent blue stain in pine logs. Canadian Journal of Botany 73: 612–619

    Google Scholar 

  • Behrendt CJ and Blanchette RA (1997) Biological processing of pine logs for pulp and paper production with Phlebiopsis gigantea. Applied and Environmental Microbiology 63: 1995–2000

    Google Scholar 

  • Blanchette RA, Farrell RL, Burnes TA, Wendler PA, Zimmerman W, Brush TS and Snyder RA (1992) Biological control of pitch in pulp and paper production by Ophiostoma piliferum. TAPPI Journal 75: 102–106

    Google Scholar 

  • Byrd AD, Scharsl CL, Songlin PJ, Mogen KL and Siegel MR (1990) The beta-tubulin gene of Epichloe typhina from perennial ryegrass (Lolium perenne). Current Genetics 18: 347–345

    Google Scholar 

  • Farrell RL, Blanchette RA, Brush TS, Hader Y, Iverson S, Kay SJ, Wendler PA and Zimmerman W (1993) Cartapip®: A biopulping product for control of pitch and resin acid problems in pulp mills. Journal of Biotechnology 30: 115–122

    Google Scholar 

  • Farrell RL, Hader E, Hader Y, Kay SJ, Blanchette RA and Harrington TC (1998) Survey of sapstain organisms in New Zealand and albino anti-sapstain fungi. In: Morrell JJ (ed) Biology and Prevention of Sapstain. Proceedings of Symposium, Whistler, B.C., Canada, May 25, 1997 (pp 57–62) Forest Products Society, Madison, USA

    Google Scholar 

  • Hausner G, Reid J and Klassen GR (1993) On the phylogeny of Ophiostoma, Ceratocystis s.s., and Microascus, and relationships within Ophiostoma based on partial ribosomal DNA sequences. Canadian Journal of Botany 71: 1249–1265

    Google Scholar 

  • Hausner G, Reid J and Klassen GR (2000) On the phylogeny of members of Ceratocystis s.s. and Ophiostoma that possess different anamorphic states, with emphasis on the anamorph genus Leptographium, based on partial ribosomal DNA sequences. Canadian Journal of Botany 78: 903–916

    Google Scholar 

  • Kim SH, Han A, Kronstad J and Breuil C (1999a) Differentiation of sapstain fungi by restriction fragment length polymorphism patterns in nuclear small subunit DNA. FEMS Microbiology Letters 177: 151–157

    Google Scholar 

  • Kim SH, Uzunovic A and Breuil C (1999b) Rapid detection of Ophiostoma piceae and O. quercus in stained wood by PCR. Applied and Environmental Microbiology 65: 287–290

    Google Scholar 

  • Kreber B and Morrell JJ (1993) Ability of selected bacterial and fungal protectants to limit fungal stain in ponderosa pine sapwood. Wood and Fiber Science 25: 23–24

    Google Scholar 

  • O'Donnell K (1992) Ribosomal DNA internal transcribed spacers are highly divergent in the phytopathogenic ascomycete Fusarium sambucinum (Gibberella pulicaris). Current Genetics 22: 213–220

    Google Scholar 

  • O'Donnell K and Cigelnik E (1997) Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Molecular Phylogenetics and Evolution 7: 103–116

    Google Scholar 

  • Okada G, Seifert KA, Takematsu A, Yamaoka Y, Miyazaki S and Tubaki K (1998) A molecular phylogenetic reappraisal of the Graphium complex based on 18S rDNA sequences. Canadian Journal of Botany 76: 1495–1506

    Google Scholar 

  • Sambrook J, Fritsch EF and Maniatis T (1989) Molecular Cloning: A Laboratory Manual, 2nd edn, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York

    Google Scholar 

  • Schroeder S, Kim SH, Cheung WT, Sterflinger K and Breuil C (2001) Phylogenetic relationship of Ophiostoma piliferum to other sapstain fungi based on the nuclear rRNA gene. FEMS Microbiology Letters 195: 163–167

    Google Scholar 

  • Seifert KA, Breuil C, Rossignol L, Best M and Saddler JM (1988) Screening for microorganisms with potential for biological control of sapstain on unseasoned lumber. Material und Organismen 23: 81–95

    Google Scholar 

  • Spatafora JW and Blackwell M (1994) The polyphyletic origins of Ophiostomatoid fungi. Mycological Research 98: 1–9

    Google Scholar 

  • Stilwell MA (1966) A growth inhibitor produced by Cryptosporiopsis sp., an imperfect fungus isolated from yellow birch, Betula alleghaniensis Britt. Canadian Journal of Botany 44: 259–267

    Google Scholar 

  • Swofford DL (1998) PAUP*: Phylogenetic analysis using parsimony, version 4.0b2. Sinaucer Associates, Sunderland, Massachusetts

    Google Scholar 

  • Thompson JD, Higgins DG and Gibson TJ (1994) CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Research 22: 4673–4680

    Google Scholar 

  • Thon MR and Royse DJ (1999) Partial β-tubulin gene sequences for evolutionary studies in the Basidiomycotina. Mycologia 91: 468–474

    Google Scholar 

  • Uzunovic A, Domanski D and Williams DP (1999a) Biological control of bluestain in logs using albino bluestain fungi - Canadian experience. In: Kreber B (ed) Proceedings of The 2nd New Zealand Sapstain Symposium. FRI Bulletin No. 215 (pp 93–98) Forest Research Institute, Rotorua, New Zealand

    Google Scholar 

  • Uzunovic A, Yang DQ, Gagne P, Breuil C, Bernier L, Byrne A, Gignac M and Kim SH (1999b) Fungi that cause sapstain in Canadian softwoods. Canadian Journal of Microbiology 45: 914–922

    Google Scholar 

  • Uzunovic A, Seifert KA, Kim SH and Breuil C (2000) Ophiostoma setosum, a common sapwood staining fungus from western North America, a new species of the Ophiostoma piceae complex. Mycological Research 104: 486–494

    Google Scholar 

  • Vilgalys R and Hester M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238–4246

    Google Scholar 

  • Yang D-Q (1999) Biological and integrated control of sapstain on Canadian softwoods by using Gliocladium roseum. In: Kreber B (ed) Proceedings of The 2nd New Zealand Sapstain Symposium (pp 87–92) Forest Research Institute, Rotorua, New Zealand

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Colette Breuil.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Schroeder, S., Hwan Kim, S., Lee, S. et al. The β-tubulin Gene is a Useful Target for PCR-based Detection of an Albino Ophiostoma piliferum Used in Biological Control of Sapstain. European Journal of Plant Pathology 108, 793–801 (2002). https://doi.org/10.1023/A:1020897018610

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1023/A:1020897018610

Navigation