Abstract
The potential of Cartapip™, an albino Ophiostoma piliferum, as a biocontrol agent against sapstain in logs has been tested in Germany. To detect the albino strain in field-tested wood, the usefulness of the β-tubulin gene as a target region for developing PCR-based assays was evaluated with 102 strains of O. piliferum and 31 strains of other wood-inhabiting species. A partial β-tubulin gene sequence of O. piliferum strains from different geographic origins was amplified by PCR and analyzed by restriction enzyme digestions and DNA sequencing. Variation in size and nucleotide sequences was found in intron regions indicating that intraspecific variation is present in the β-tubulin gene. Consequently, β-tubulin gene-derived PCR methods using PCR–RFLP patterns generated by HinfI and SpeI and sequence-specific primers Cat1 and Cat2, were developed and their specificity for Cartapip™ was accessed with field-tested logs and lumber. The β-tubulin gene-based PCR methods were found to be valuable tools for rapid and reliable identification of Cartapip™ in field-tested logs and lumber in Germany. Specificity tests against other wood-inhabiting species and wild type O. piliferum strains from diverse nations showed that the Cat1 and Cat2 primers have potential to be used in other European countries, New Zealand, Alberta and British Columbia.
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Behrendt CJ, Blanchette RA and Farrell RL (1995a) Biological control of blue-stain fungi in wood. Phytopathology 85: 92–97
Behrendt CJ, Blanchette RA and Farrell RL (1995b) An integrated approach, using biological and chemical control, to prevent blue stain in pine logs. Canadian Journal of Botany 73: 612–619
Behrendt CJ and Blanchette RA (1997) Biological processing of pine logs for pulp and paper production with Phlebiopsis gigantea. Applied and Environmental Microbiology 63: 1995–2000
Blanchette RA, Farrell RL, Burnes TA, Wendler PA, Zimmerman W, Brush TS and Snyder RA (1992) Biological control of pitch in pulp and paper production by Ophiostoma piliferum. TAPPI Journal 75: 102–106
Byrd AD, Scharsl CL, Songlin PJ, Mogen KL and Siegel MR (1990) The beta-tubulin gene of Epichloe typhina from perennial ryegrass (Lolium perenne). Current Genetics 18: 347–345
Farrell RL, Blanchette RA, Brush TS, Hader Y, Iverson S, Kay SJ, Wendler PA and Zimmerman W (1993) Cartapip®: A biopulping product for control of pitch and resin acid problems in pulp mills. Journal of Biotechnology 30: 115–122
Farrell RL, Hader E, Hader Y, Kay SJ, Blanchette RA and Harrington TC (1998) Survey of sapstain organisms in New Zealand and albino anti-sapstain fungi. In: Morrell JJ (ed) Biology and Prevention of Sapstain. Proceedings of Symposium, Whistler, B.C., Canada, May 25, 1997 (pp 57–62) Forest Products Society, Madison, USA
Hausner G, Reid J and Klassen GR (1993) On the phylogeny of Ophiostoma, Ceratocystis s.s., and Microascus, and relationships within Ophiostoma based on partial ribosomal DNA sequences. Canadian Journal of Botany 71: 1249–1265
Hausner G, Reid J and Klassen GR (2000) On the phylogeny of members of Ceratocystis s.s. and Ophiostoma that possess different anamorphic states, with emphasis on the anamorph genus Leptographium, based on partial ribosomal DNA sequences. Canadian Journal of Botany 78: 903–916
Kim SH, Han A, Kronstad J and Breuil C (1999a) Differentiation of sapstain fungi by restriction fragment length polymorphism patterns in nuclear small subunit DNA. FEMS Microbiology Letters 177: 151–157
Kim SH, Uzunovic A and Breuil C (1999b) Rapid detection of Ophiostoma piceae and O. quercus in stained wood by PCR. Applied and Environmental Microbiology 65: 287–290
Kreber B and Morrell JJ (1993) Ability of selected bacterial and fungal protectants to limit fungal stain in ponderosa pine sapwood. Wood and Fiber Science 25: 23–24
O'Donnell K (1992) Ribosomal DNA internal transcribed spacers are highly divergent in the phytopathogenic ascomycete Fusarium sambucinum (Gibberella pulicaris). Current Genetics 22: 213–220
O'Donnell K and Cigelnik E (1997) Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Molecular Phylogenetics and Evolution 7: 103–116
Okada G, Seifert KA, Takematsu A, Yamaoka Y, Miyazaki S and Tubaki K (1998) A molecular phylogenetic reappraisal of the Graphium complex based on 18S rDNA sequences. Canadian Journal of Botany 76: 1495–1506
Sambrook J, Fritsch EF and Maniatis T (1989) Molecular Cloning: A Laboratory Manual, 2nd edn, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
Schroeder S, Kim SH, Cheung WT, Sterflinger K and Breuil C (2001) Phylogenetic relationship of Ophiostoma piliferum to other sapstain fungi based on the nuclear rRNA gene. FEMS Microbiology Letters 195: 163–167
Seifert KA, Breuil C, Rossignol L, Best M and Saddler JM (1988) Screening for microorganisms with potential for biological control of sapstain on unseasoned lumber. Material und Organismen 23: 81–95
Spatafora JW and Blackwell M (1994) The polyphyletic origins of Ophiostomatoid fungi. Mycological Research 98: 1–9
Stilwell MA (1966) A growth inhibitor produced by Cryptosporiopsis sp., an imperfect fungus isolated from yellow birch, Betula alleghaniensis Britt. Canadian Journal of Botany 44: 259–267
Swofford DL (1998) PAUP*: Phylogenetic analysis using parsimony, version 4.0b2. Sinaucer Associates, Sunderland, Massachusetts
Thompson JD, Higgins DG and Gibson TJ (1994) CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Research 22: 4673–4680
Thon MR and Royse DJ (1999) Partial β-tubulin gene sequences for evolutionary studies in the Basidiomycotina. Mycologia 91: 468–474
Uzunovic A, Domanski D and Williams DP (1999a) Biological control of bluestain in logs using albino bluestain fungi - Canadian experience. In: Kreber B (ed) Proceedings of The 2nd New Zealand Sapstain Symposium. FRI Bulletin No. 215 (pp 93–98) Forest Research Institute, Rotorua, New Zealand
Uzunovic A, Yang DQ, Gagne P, Breuil C, Bernier L, Byrne A, Gignac M and Kim SH (1999b) Fungi that cause sapstain in Canadian softwoods. Canadian Journal of Microbiology 45: 914–922
Uzunovic A, Seifert KA, Kim SH and Breuil C (2000) Ophiostoma setosum, a common sapwood staining fungus from western North America, a new species of the Ophiostoma piceae complex. Mycological Research 104: 486–494
Vilgalys R and Hester M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238–4246
Yang D-Q (1999) Biological and integrated control of sapstain on Canadian softwoods by using Gliocladium roseum. In: Kreber B (ed) Proceedings of The 2nd New Zealand Sapstain Symposium (pp 87–92) Forest Research Institute, Rotorua, New Zealand
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Schroeder, S., Hwan Kim, S., Lee, S. et al. The β-tubulin Gene is a Useful Target for PCR-based Detection of an Albino Ophiostoma piliferum Used in Biological Control of Sapstain. European Journal of Plant Pathology 108, 793–801 (2002). https://doi.org/10.1023/A:1020897018610
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DOI: https://doi.org/10.1023/A:1020897018610