Skip to main content
Log in

Molecular Analysis of the rDNA ITS-1 Intergenic Spacer in Drosophila mulleri, D. arizonae, and Their Hybrids

  • Published:
Biochemical Genetics Aims and scope Submit manuscript

Abstract

We analyzed the ITS-1 spacer region of the rDNA in Drosophila mulleri and D. arizonae, two sibling species belonging to the mulleri complex (repleta group) and in hybrids obtained in both cross directions. In spite of several previous studies showing the incompatibility of crosses involving D. arizonae females and D. mulleri males, we were able to obtain hybrids in this direction. Complete ITS-1 region was amplified using primers with homology at the 3′-end of the 18S rDNA and the 5′-end of the 5.8S rDNA genes. Our data demonstrated that D. mulleri and D. arizonae can be differentiated as they present a difference in length for the ITS-1 region. The amplified fragment for this region in D. mulleri has a length of 600 bp, whereas in D. arizonae this fragment is about 500 bp. It was also observed that male and female hybrids obtained in both cross directions present two amplified fragments, confirming the location of the ribosomal cistrons in the X chromosomes and microchromosomes of both parental species.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

REFERENCES

  • Amarger, V., and Mercier, L. (1996). Nuclear ribosomal DNA unit length variation: A putative marker of genetic diversity in Jojoba. Int. J. Plant Sci. 157(3):296.

    Google Scholar 

  • Bicudo, H. E. M. C. (1981a). Nucleolar organizer activity and its regulatory mechanisms in Drosophila species of the “mulleri” complex and their hybrids. Caryologia 34(2):231.

    Google Scholar 

  • Bicudo, H. E. M. C. (1981b). Further observations on the nucleolar organizing activity in salivary gland cells of Drosophila mulleri, D. arizonensis and their hybrids. Biol. Zbl. 100:597.

    Google Scholar 

  • Bicudo, H. E. M. C. (1982). Estudo citogen´etico de esp´ecies de Drosophila do complexo mulleri (grupo repleta). A regula¸cão da atividade organizadora nucleolar. In Tese de Livre Docência, IBILCE-UNESP, São Jos´e do Rio Preto, SP, p. 209.

  • Bicudo, H. E. M. C., and Richardson, R. H. (1977). Gene regulation in Drosophila mulleri, D. arizonensis, and their hybrids: The nucleolar organizer. P. N. A. S. 74(8):3498.

    Google Scholar 

  • Bicudo, H. E. M. C., and Richardson, R. H. (1978). Morphological and developmental studies of Drosophila mulleri, D. arizonensis and their hybrids. Biol. Zbl. 97:195.

    Google Scholar 

  • Bicudo, H. E. M. C., and Richardson, R. H. (1981). Location of ribosomic cistrons in the salivary gland cells of Drosophila mulleri, D. arizonensis and their hybrids. Rev. Brasil Genet. 4(3):477.

    Google Scholar 

  • Birch, A. N. E., Fenton, B., Malloch, G., Jones, A. T., Phillips, M. S., Harrower, B. E., Woodford, J. A. T., and Catley, M. A. (1994). Ribosomal spacer length variability in the large raspberry aphid, Amphorophora idaei (Aphidinae: Macrosiphini). Insect Mol. Biol. 3(4):239.

    Google Scholar 

  • Bowen, T., and Dover, G. A. (1995). PCR amplification of intergenic spacers in the ribosomal DNA of Drosophila melanogaster reveals high levels of turnover in length and copy-number of spacers in geographically separated populations. Mol. Ecol. 4(4):419.

    Google Scholar 

  • Brown, B., Emberson, R., and Paterson, A. (2000). Phylogenetic relationships within the genusWiseana (Lepidoptera: Hepialidae). New Zeal. J. Zool. 27(1):1.

    Google Scholar 

  • Cocciolone, S. M., and Cone, K. C. (1993). PI-Bb, an anthocyanin regulatory gene of maize that leads to variegated pigmentation. Genetics 135:575.

    Google Scholar 

  • Cornel, A. J., Coetzee, M., Van Rensburg, A. J., Koekemoer, L. L., Hunt, R. H., and Collins, F. H. (1997). Ribosomal DNA-polymerase chain reaction assay discriminates between Anopheles quadriannulatus and A. merus (Diptera: Culicidae). J. Med. Entomol. 34(5):573.

    Google Scholar 

  • Crow, J. F. (1942). Cross fertility and isolating mechanisms in the Drosophila mulleri group. University of Texas Publication NO. 4228, p. 53.

  • Endow, S. A., and Gall, J. C. (1975). Differential replication of satellite DNA in polyploid tissue of Drosophila virilis. Chromosoma 50:175.

    Google Scholar 

  • Ganley, A. R. D., and Scott, B. (1998). Extraordinary ribosomal spacer length heterogeneity in a Neotyphodium endophyte hybrid: Implications for concerted evolution. Genetics 150:1625.

    Google Scholar 

  • Gloor, G., and Engels, W. (1992). Single fly DNA preps for PCR. Dros. Inf. Serv. 71:148.

    Google Scholar 

  • Gupta, J. P., and Kumar,A. (1987). Cytogenetics of Zaprionus indianus Gupta (Diptera: Drosophilidae): nucleolar organizer regions, mitotic and polytene chromosomes and inversion polymorphism. Genetica 74:19.

    Google Scholar 

  • H¨agele, K., and Ranganath, H. A. (1983). The chromosomes of two Drosophila races: Drosophila nasuta nasuta and Drosophila nasuta albomicans. III. Localization of nucleolar organizer regions. Genetica 60:123.

    Google Scholar 

  • Hennig,W., Link, B., and Leoncini, O. (1975). The location of nucleolus organizer regions in Drosophila hydei. Chromosoma 51:57.

    Google Scholar 

  • Hillis, D. M., and Dixon, M. T. (1991). Ribosomal DNA: Molecular evolution and phylogenetic inference. Q. Rev. Biol. 66:411.

    Google Scholar 

  • Hoy, M. A. (1994). Insect molecular systematics and evolution. In Hoy, M. A. (eds.), Insect Molecular Genetics: An Introduction to Principles and Applications, Academic Press, New York pp. 360-363.

    Google Scholar 

  • Kumar, P. L., Fenton, B., and Jones, A. T. (1999). Identification of Cecidophyopsis mites (Acari: Eriophydae) based on variable simple sequence repeats of ribosomal DNA internal transcribed spacer-1 sequences via multiplex PCR. Insect Mol. Biol. 8(3):347.

    Google Scholar 

  • Lapenta, A. S., Bicudo, H. E. M. C., Ceron, C. R., and Cordeiro, J. A. (1995). Esterase patterns of species in the Drosophila buzzattii cluster. Cytobios 84:13.

    Google Scholar 

  • Leoncini, O., Tovar, F. J., and Bicudo, H. E. M. C. (1996). Molecular evidence of ribosomal DNA (rDNA) amplification of a minichromosome derived from Drosophila arizonae in D. mulleri-D. arizonae hybrid males. Braz. J. Gen. 19(1):43.

    Google Scholar 

  • Lohe, A. R., and Roberts, P. A. (1990). An unusual Y chromosome of Drosophila simulans carrying amplified rDNA spacer without rRNA genes. Genetics 125:399.

    Google Scholar 

  • Long, E. O., and Dawid, I. B. (1980). Repeated genes in eukaryotes. Annu. Rev. Biochem. 49:727.

    Google Scholar 

  • Lucchini, S. D., Andronico, F., and Nardi, I. (1997). Molecular structure of the rDNA intergenic spacer (IGS) in Triturus: Implications for the hypervariability of rDNA loci. Chromosoma 106:315.

    Google Scholar 

  • Marinucci, M., Romi, R., Mancini, P., Di Luca, M., and Severini, C. (1999). Phylogenetic relationships of seven paleartic members of the maculipennis complex inferred from ITS-2 sequence analysis. Insect Mol. Biol. 8(4):469.

    Google Scholar 

  • Mecheva, I. S., and Semionov, E. P. (1992). Localization of ribosomal DNA insertion elements in polytene chromosomes of Drosophila simulans, Drosophila mauritiana and their interspecific hybrids. Genetica 85:223.

    Google Scholar 

  • Mehta, A., and Rosato, Y. B. (2001). Phylogenetic relationships of Xilella fastidiosa strains from different hosts, based on 16S rDNA and 16S-23S intergenic spacer sequences. Int. J. Syst. Evol. Microbiol. 51(2):311.

    Google Scholar 

  • Navajas, M., Cotton, D., Kreiter, S., and Gutierrez, J. (1992). Molecular approach in spider mites (Acari: Tetranychidae): Preliminary data on ribosomal DNA sequences. Experim. Appl. Acarol. 15: 211.

    Google Scholar 

  • Patterson, J. T. (1947). Sexual isolation in the mulleri subgroup. In Studies in the genetics of Drosophila.V. isolating mechanisms. University of Texas Publication No. 4729, p. 32.

  • Pen, J., Van Beeumen, J. V., and Beintema, J. J. (1986). Structural comparison of two esterases from Drosophila mojavensis isolated by immunoaffinity chromatography. Biochem. J. 278:691.

    Google Scholar 

  • Perez-Gonzalez, C. E., and Eickbush, T. H. (2001). Dynamics of R1 and R2 elements in the rDNA locus of Drosophila simulans. Genetics 158:1557.

    Google Scholar 

  • Polanco, C., Gonzalez, A. I., Fuente, A., and Dover, G. A. (1998). Multigene family of ribosomal DNA in Drosophila melanogaster reveals contrasting patterns of homogenization for IGS and ITS spacer region: A possible mechanism to resolve this paradox. Genetics 149:243.

    Google Scholar 

  • Porter, C. H., and Collins, F. H. (1991). Species-diagnostic differences in a ribosomal DNA internal transcribed spacer from the sibling species Anopheles freeborni and Anopheles hermsi (Diptera: Culicidae). Am. J. Trop. Med. Hyg. 45(2):271.

    Google Scholar 

  • Scott, J. A., Brogdon, W. G., and Collins, F. H. (1993). Identification of a single specimen of Anopheles gambiae complex by the polymerase chain reaction. Am. J. Trop. Med. Hyg. 49(4):520.

    Google Scholar 

  • Sinibaldi, R. M., and Cummings, M. R. (1981). Localization and characterization of rDNA in Drosophila timiditarsus. Chromosoma 81:655.

    Google Scholar 

  • Spear, B. (1974). The genes for ribosomal RNA in diploid and polytene chromosomes of Drosophila melanogaster. Chromosoma 48:159.

    Google Scholar 

  • Tovar, F. J., da Silva, L. A. F., Rodarte, R. S., and Leoncini, O. (2000). Characterization of rDNA in Drosophila arizonae. Genet. Mol. Biol. 23(2):331.

    Google Scholar 

  • Wasserman, M. (1992). Cytological evolution of the Drosophila repleta species group. In: Krimbas, C. B., and Powel, J. R. (eds). Drosophila inversion polymorphism, CRC Press, Boca Raton, FL, pp. 455-552.

    Google Scholar 

  • Whiley, R. A., Duke, B., Hardie, J. M., and Hall, L. M. (1995). Heterogeneity among 16S-23S RNAr intergenic spacers of species within the Streptococcus milleri group. Microbiology 141(6): 1461.

    Google Scholar 

  • White, E. E., Dubetz, C. P., Cruickshank, M. G., and Morrison, D. J. (1998). DNA diagnostic for Armillaria species in British Columbia: Within and between species variation in the IGS-1 and IGS-2 regions. Mycologia 90(1):125.

    Google Scholar 

  • Zouros, E., van Delden, W., Odense, R., and van Dijk, H. (1982). An esterase duplication in Drosophila: Differences in expression of duplicate loci within and among related species. Biochem. Genet. 20(9/10):929.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Baffi, M.A., Ceron, C.R. Molecular Analysis of the rDNA ITS-1 Intergenic Spacer in Drosophila mulleri, D. arizonae, and Their Hybrids. Biochem Genet 40, 411–421 (2002). https://doi.org/10.1023/A:1020729612672

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1023/A:1020729612672

Navigation