Abstract
The use of a diffusion filter is proposed to suppress the NMRsignals of small organic compounds in the presence of macromolecules.Combined with a spin-echo relaxation filter, the diffusion filter enablesthe selective and simultaneous detection of intermolecularsolvent–protein NOEs in a straightforward two-dimensional NOESYexperiment. Using the intermolecular NOEs observed betweenN,N-dimethylformamide (DMF) and hen egg-white lysozyme in an aqueoussolution containing 2 M DMF, the binding of DMF at thespecificity-determining substrate binding site C of the enzyme was modelled.
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Allen, K.N., Bellamacina, C.R., Ding, X., Jeffery, C.J., Mattos, C., Petsko, G.A. and Ringe, D. (1996) J. Phys. Chem., 100, 2605–2611.
Arnold, F.H. (1993) Curr. Opin. Biotechnol., 4, 450–455.
Cheetham, J.C., Artymiuk, P.J. and Phillips, D.C. (1992) J. Mol. Biol., 224, 613–628.
Ferrin, T.E., Huang, C.C., Jarvis, L.E. and Langridge, R. (1988) J. Mol. Graph., 6, 13–27.
Fitzpatrick, P.A., Steinmetz, A.C.U., Ringe, D. and Klibanov, A.M. (1993) Proc. Natl. Acad. Sci. USA, 90, 8653–8657.
Halling, P.J. (1994) Enzyme Microb. Technol., 16, 178–206.
Jóhannesson, H., Denisov, V.P. and Halle, B. (1997) Protein Sci., manuscript submitted.
Kraulis, P. (1991) J. Appl. Crystallogr., 24, 946–950.
Liepinsh, E. and Otting, G. (1994) J. Am. Chem. Soc., 116, 9670–9674.
Liepinsh, E. and Otting, G. (1997) Nat. Biotechnol., 5, 264–268.
Mattos, C. and Ringe, D. (1996) Nat. Biotechnol., 14, 595–599.
Mori, S., Berg, J.M. and Van Zijl, P.C.M. (1996) J. Biomol. NMR, 7, 77–82.
Otting, G., Liepinsh, E., Farmer II, B.T. and Wüthrich, K. (1991) J. Biomol. NMR, 1, 209–215.
Otting, G., Liepinsh, E., Halle, B. and Frey, U. (1997) Nat. Struct. Biol., 4, 396–404.
Sklenář, V. (1995) J. Magn. Reson., A114, 132–135.
Van Zijl, P.C.M. and Moonen, C.T.W. (1990) J. Magn. Reson., 87, 18–25.
Wescott, C.R. and Klibanov, A.M. (1994) Biochim. Biophys. Acta, {vn1206}, 1–9.
Wider, G., Dötsch, V. and Wüthrich, K. (1994) J. Magn. Reson., {vnA108}, 255–258.
Wu, D., Chen, A. and Johnson Jr., C.S. (1995) J. Magn. Reson., {vnA115}, 260–264.
Yennawar, H.P., Yennawar, N.H. and Farber, G.K. (1995) J. Am. Chem. Soc., 117, 577–585.
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Ponstingl, H., Otting, G. Detection of protein–ligand NOEs with small, weakly binding ligands by combined relaxation and diffusion filtering. J Biomol NMR 9, 441–444 (1997). https://doi.org/10.1023/A:1018363030177
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DOI: https://doi.org/10.1023/A:1018363030177