Skip to main content
Log in

Structure-based combinatorial library design: Discovery of non-peptidic inhibitors of caspases 3 and 8

  • Published:
Journal of Computer-Aided Molecular Design Aims and scope Submit manuscript

Abstract

Structure-based design of a combinatorial array was carried out in order to identify non-peptidic thiomethylketone inhibitors of caspases 3 and 8. Five compounds from the designed array were active against caspase 3, and two were active against caspase 8. A 2.5-Å   resolution co-crystal structure of caspase 3 and a thiomethylketone array member is reported. The structure-based design strategy has proved useful for identifying caspase inhibitors.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Nuttall, M.E., Levy, M.A., James, M.F., and Winkler, J.D., Emerging Drugs, 3v (1998) 317.

    Google Scholar 

  2. Thornberry, N.A. and Lazebnik, Y. Science, 281v (1998) 1312.

    Google Scholar 

  3. Talanian, R.V., Brady, K.D., and Cryns, V.L., J. Med. Chem., 43(18), (2000) 3351.

    Google Scholar 

  4. Kaufmann, S.H. (ed.), Apoptosis: Pharmalogical Implications and Therapeutic Opportunities. Academic Press, San Diego, CA, (1997).

    Google Scholar 

  5. Lockshin, R.A., Zakeri, Z., and Tilly, J.L. (eds.), When Cells Die. Wiley-Liss, New York, (1998).

    Google Scholar 

  6. Rotonda, J., Nicholson, D.W., Fazil, K.M., Gallant, M., Gareau, Y., Labelle, M., Peteron, E.P., Rasper, D.M., Ruel, R., Vaillancourt, J.P., Thornberry, N.A., and Becker, J.W., Nature Struct. Biol, 3, (1996) 619.

    Google Scholar 

  7. Rano, T.A., Timkey, T., Peterson, E.P., Rotonda, J., Nicholson, D.W., Beckeer, J.W., Chapman, K.T., and Thornberry, N.A., Chem. Biol., 4, (1997) 149.

    Google Scholar 

  8. Mittl, P.R.E., Di Marco, S., Krebs, J.F., Bai, X., Karanewsky, D.S., Priestle, J.P., Tomaselli, K.J., adn Gruetter, M.G., J. Biol. Chem., 272 (1997) 6539.

    Google Scholar 

  9. Okamoto, Y., Anan, HK, Nakai, E., Morihira, K., Yonetoku, Y., Kurihara, H., Sakashita, H., Terai, Y., Takeuchi, M., Shibanuma, T., and Isomura, Y., Chem. Pharm. Bull., 47, (1999) 11.

    Google Scholar 

  10. Lee, D., Long, S.A., Adams, J.L., Chan, G., Vaidya, K.S., Francis, T.A., Kikly, K., Winkler, J.D., Sung, C.-M., Debouck, C., Richardson, S., Levy, M.A., De-Wolf, W.E., Jr., Keller, P.M., Tomaszek, T., Head, M.S., Ryan, M.D., Haltiwanger, R.C., Liang, P.-H., Janson, C.A., McDevitt, P.J., Johanson, K., Concha, N.O., Chan, W., Abdel-Meguid, S.S., Badger, A.M., Lark, M.W., Nadeau, D.P., Suva, L.H., Gowen, M., and Nuttall, M.E., J. Biol. Chem., 275(21), (2000) 16007.

    Google Scholar 

  11. Lee, D., Long, S.A., Murray, J.H., Adams, J.L., Nadeau, D.P., Nuttall, M.E., Kikly, K., Winkler, J.D., Sung, C.-M., Levy, M.A., Keller, P.M., and DeWolf, W.E., J. Med. Chem., 44, (2001) 2015.

    Google Scholar 

  12. Lee, A., Huang, L., and Ellman, J.A., J. Am. Chem. Soc., 121, (1999) 9907.

    Google Scholar 

  13. Mjali, A.M.M., Chapman, K.T., Zhao, J., Thornberry, N.A., Peterson, E.P., and MacCoss, M., Bioorg. Med. Chem. Lett., 5, (1995) 317.

    Google Scholar 

  14. Brady, K.D., Giegel, D.A., Grinnell, C., Lunney, E., Talanian, R.V., Wong, W., and Walker, N. Bioorg. Med. Chem., 7 (1999) 621.

    Google Scholar 

  15. McMartin, C. and Bohacek, R.S., J. Comput. Aid. Mol. Des., 11, (1997) 333.

    Google Scholar 

  16. Thompson, L.A. and Ellman, J.A., 'Straigthforward and general method for coupling alcohols to solid supports', 9333.

  17. Dangles, O., Guibe, F., Balavoine, G., Lavielle, S., and Marquet, A., J. Org. Chem., 52, (1987) 4984.

    Google Scholar 

  18. Carpino, L.A. and El-Faham, A., Tetrehedron, 55 (1999) 6813.

    Google Scholar 

  19. Brady, K.D., Biochemistry, 37 (1998) 8508.

    Google Scholar 

  20. Cleland, W.W., Meth. Enzymol., 63 (1979) 103.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Head, M.S., Ryan, M.D., Lee, D. et al. Structure-based combinatorial library design: Discovery of non-peptidic inhibitors of caspases 3 and 8. J Comput Aided Mol Des 15, 1105–1117 (2001). https://doi.org/10.1023/A:1015976725743

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1023/A:1015976725743

Navigation