Abstract
We screened genetic variation in a polytypicorganism, whose populations are oftendistributed into numerous isolated habitats,and integrated the results into a critique ofdefining ``units'' of conservation for organismswith highly fragmented populations. Sixteenpopulations of brown trout Salmo truttaL. across 8 Portuguese river basins werescreened for variation at 5 loci (mtDNA andallozymes). Population history based on mtDNArevealed a mosaic pattern driven by pastfragmentation and restricted gene flow withlittle correspondence to major river drainagesor recently proposed OCUs on the IberianPeninsula. Such patterns of variation offer achallenge to conservation strategies that basethemselves on defining units of conservation,particularly if such units intend to reflect ahierarchical evolutionary structure. Wesuggest that geographically mosaic patterns ofevolutionary lineages, as well as adaptivelysignificant traits are common characteristicsof many freshwater organisms. Thus,large-scale units, even if diagnosed by mtDNAclades, are often too heterogeneous to considera ``unit'' of conservation. Alternatively, abottom-up perspective that prioritizespopulations or metapopulations is both morepractical and more effective in recognizing andpreserving evolutionary diversity.
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References
Allendorf FW,Leary RF (1988) Conservation and distribution of genetic variation in a polytypic species, the cutthroat trout. Cons. Biol., 2, 170-184.
Antunes A,Alexandrino P,Ferrand N (1999) Genetic characterization of Portuguese brown trout (Salmo trutta L.) and comparison with other European populations. Ecol. Freshwater Fish, 8, 194-200.
Antunes A,Ferrand N,Alexandrino P (2000) Highly polymorphic plasma protein locus in brown trout Salmo trutta (L.) populations from Portugal. Biochem. Genet., 38, 217-226.
Arias J,Sánchez L,Martínez P (1995) Low stocking incidence in brown trout populations from northwestern Spain monitored by LDH-5* diagnostic marker. J. Fish Biol., 47, 170-176.
Banks MA,Eichert W (2000) WHICHRUN (Version 3.2) a computer program for population assignment of individuals based on multilocus genotype data. J. Hered., 91, 87-89.
Behnke RJ (1972) The systematics of salmonid fishes of recently glaciated lakes. J. Fish. Res. Bd. Canada, 29, 639-671.
Bernatchez L (1995) A role for molecular systematics in defining significant evolutionary units. In: Evolution and the Aquatic Ecosystem: Defining Unique Units in Population Conservation (eds. Nielsen JL,Powers DA), pp. 114-132. American Fisheries Society Symposium 17, American Fisheries Society, Bethesda, Maryland, USA.
Bernatchez L (2001) The evolutionary history of brown trout (Salmo trutta L.) inferred from phylogeographic, nested clade, and mismatch analyses of mitochondrial DNA variation. Evolution, 33, 351-379.
Bernatchez L,Guyomard R,Bonhomme F (1992) DNA sequence variation of the mitochondrial control region among geographically and morphological remote European brown trout (Salmo trutta) populations. Mol. Ecol., 1, 161-173.
Bouza C,Castro J,Sánchez L,Martínez P (2001) Allozymic evidence of parapatric differentiation of brown trout (Salmo trutta L.) within an Atlantic river basin of the Iberian Peninsula. Mol. Ecol., 10, 1455-1469.
Bouza C,Arias J,Castro J,Sánchez L,Martínez P (1999) Genetic structure of brown trout, Salmo trutta L., at the southern limit of the distribution range of the anadromous form. Mol. Ecol., 8, 1991-2002.
Clement M,Posada D,Crandall KA (2000) TCS: a computer program to estimate gene genealogies. Mol. Ecol., 9, 1657-1660.
Crandall KA,Templeton AR (1993) Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction. Genetics, 134, 959-969.
Crandall KA,Bininda-Emonds O,Mace G,Wayne R (2000) Considering evolutionary processes in conservation biology. Trends Ecol. Evol., 15, 290-291
Crozier WW,Ferguson A (1986) Electrophoretic examination of the population structure of brown trout (Salmo trutta) from the Lough Neagh catchment, Northern Ireland. J. Fish Biol., 28, 459-477.
Currens KP,Schreck CB,Li HW (1990) Allozyme and morphological divergence of rainbow trout (Oncorhynchus mykiss) above and below waterfalls in the Deschutes River, Oregon. Copeia, 1990, 730-746.
Dodson JJ,Gibson RJ,Cunjak RA,Friedland KD,Garcia de Leaniz C,Gross MR,Newburym R,Nielsen JL,Power ME,Roy S (1998) Elements in the development of conservation plans for Atlantic salmon (Salmo salar). Can. J. Fish. Aquat. Sci., 55, 312-323.
Elliott JM (1994) Quantitative ecology and the brown trout. Oxford Series in Ecology and Evolution, Oxford University Press, Oxford, Great Britain.
Excoffier L,Smouse PE,Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data. Genetics, 131, 479-491.
Ferguson A (1989) Genetic differences among brown trout (Salmo trutta) stocks and their importance for the conservation and management of the species. Freshwater Biol., 21, 35-46.
Ferguson A,Taggart JB (1991) Genetic differentiation among the sympatric brown trout (Salmo trutta) populations of Lough Melvin, Ireland. Biol. J. Linn. Soc., 43, 221-237.
García-Marín JL,Pla C (1996) Origins and relationships of native populations of Salmo trutta (brown trout) in Spain. Heredity, 77, 313-323.
García-Marín JL,Utter FM,Pla C (1999) Postglacial colonization of brown trout in Europe based on distribution of allozyme variants. Heredity, 82, 46-56.
García-Marín JL,Jorde PE,Ryman N,Utter FM,Pla C (1991) Management implications of genetic differentiation between native and hatchery populations of brown trout (Salmo trutta) in Spain. Aquaculture, 95, 235-249.
Goldstein PZ,DeSalle R,Amato G,Vogler AP (2000) Conservation genetics at the species boundary. Cons. Biol., 14, 120-131.
Grant WS,García-Marín JL,Utter FM (1999) Defining population boundaries for fishery management. In: Genetics Sustainable Fisheries Management (ed. Mustafa S), pp. 27-72. Fishing News Books, Blackwell Science, Oxford, UK.
Guyomard R (1989)Diversité génétique de la truite commune. Bull. Fr. Pê che Piscic., 314, 118-135.
Hansen MM,Mensberg K-LD (1998) Genetic differentiation and relationship between genetic and geographical distance in Danish sea trout (Salmo trutta L.) populations. Heredity, 81, 493-504.
Hamilton KE,Ferguson A,Taggart JB,Tomasson T,Walker A,Fahy E (1989) Post-glacial colonization of brown trout, Salmo trutta L.: Ldh-5 as a phylogeographic marker locus. J. Fish Biol., 35, 651-664.
Hewitt RG (2000) The genetic legacy of the Quaternary ice ages. Nature, 405, 907-913.
Hoelzer GA (1997) Inferring Phylogenies from mtDNA variation: Mitochondrial gene trees versus nuclear gene trees revisited. Evolution, 51, 622-626.
Kottelat M (1997) European freshwater fishes. An heuristic checklist of the freshwater fishes of Europe (exclusive of former USSR), with an introduction for non-systematists and comments on nomenclature and conservation. Biol. Brat., 52(Suppl. 5), 1-271.
Krieg F,Guyomard R (1985) Population genetics of French brown trout (Salmo trutta L.): Large geograpical differentiation of wild populations and high similarity of domesticated stocks. Génét. Sélect. Évol., 17, 225-242.
Laikre L,Antunes A,Apostolidis A,Berrebi P,Duguid A,Ferguson A,García-Marín JL,Guyomard R,Hansen MM,Hindar K,Koljonen ML,Largiader C,Martínez P,Nielsen E,Palm S,Ruzzante D,Ryman N,Triantaphyllidis C (1999) Conservation Genetic Management of Brown Trout (Salmo trutta) in Europe. Report by the Concerted action on identification, management and exploitation of genetic resources in the brown trout (Salmo trutta) (“TROUTCONCERT” EU FAIR CT97-3882).
MacCrimmon HR,Marshall TL (1968) World distribution of brown trout, Salmo trutta. J. Fish. Res. Bd. Canada, 25, 2527-2548.
Machordom A,Suarez J,Almodó var A,Bautista JM (2000) Mitocondrial haplotype variation and phylogeography of Iberian brown trout populations. Mol. Ecol., 9, 1325-1338.
Martínez P,Arias J,Castro J,Sánchez L (1993) Differential stocking incidence in brown trout (Salmo trutta) populations from northwestern Spain. Aquaculture, 114, 203-216.
McGlashan DJ,Hughes JM (2000) Reconciling patterns of genetic variation with stream structure, earth history and biology in the Australian freshwater fish Craterocephalus stercusmuscarum (Atherinidae). Mol. Ecol., 9, 1737-1751.
Morán P,Pendás AM,García-Vásquez E,Izquierdo JI (1991) Failure of a stocking policy, of hatchery reared brown trout, Salmo trutta L, in Asturias, Spain, detected using Ldh-5* as a genetic marker. J. Fish Biol., 39(Suppl. A), 117-121.
Morán P,Pendás AM,García-Vásquez E,Izquierdo JI,Lobon-Cervia J (1995) Estimates of gene flow among neighbouring populations of brown trout. J. Fish Biol., 46, 93-602.
Moritz C,Lavery S,Slade R (1995) Using allele frequency and phylogeny to define units for conservation and management. In: Evolution and the Aquatic Ecosystem: Defining Unique Units in Population Conservation (eds. Nielsen JL,Powers DA), pp. 249-262. American Fisheries Society Symposium 17, American Fisheries Society, Bethesda, Maryland, USA.
Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York NY.
Paetkau D (1999) Using genetics to identify intraspecific conservation units: A critique of current methods. Cons. Biol., 13, 1507-1509.
Posada D,Crandall KA,Templeton AR (2000) GeoDis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Mol. Ecol., 9, 487-488.
Presa P,Krieg F,Estoup A,Guyomard R (1994) Diversité et gestion génétique de la truite commune: apport de l'étude du polymorphisme des locus protéiques et microsatellites. Génét. Sélect. Évol., 26 (Suppl. 1), 183-202.
Raymond M,Rousset F (1995) Population genetics software for exact tests and ecumenicism. J. Hered., 86, 248-249.
Ryder OA (1986) Species conservation and systematics: The dilemma of subspecies. Trends Ecol. Evol., 1, 9-10.
Ryman N (1983) Patterns of distribution of biochemical genetic variation in salmonids: Differences between species. Aquaculture, 33, 1-21.
Ryman N,Allendorf FW,Stå hl G (1979) Reproductive isolation with little genetic divergence in sympatric populations of brown trout (Salmo trutta). Genetics, 92, 247-262.
Sambrook J,Fritsch EF,Maniatis T (1989) Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor Laboratory Press, New York.
Sanz N,García-Marín JL,Pla C (2000) Divergence of brown trout (Salmo trutta) within glacial refugia. Can. J. Fish. Aquat. Sci., 57, 2201-2210.
Schneider S,Kueffer JM,Roesslie D,Excoffier L (1997) Arlequin Version 1.1. Genetics and Biometry Laboratory, Dept. of Anthropology, University of Geneva, Switzerland.
SNPRCN (1991) Livro Vermelho dos Vertebrados de Portugal. Volume II-Peixes Dulciaquícolas e Migradores. Serviç o Nacional de Parques, Reservas e Conservaç ã o da Natureza (SNPRCN), Lisboa.
Templeton AR (1998) Nested clade analysis of phylogeographic data: Testing hypotheses about gene flow and population history. Mol. Ecol., 7, 381-397.
Templeton AR,Sing CF (1993) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested analyses with cladogram uncertainty and recombination. Genetics, 134, 659-669.
Templeton AR,Boerwinkle E,Sing CF (1987) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila. Genetics, 117, 343-351.
Templeton AR,Crandall KA,Sing CF (1992) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics, 132, 619-633.
Templeton AR,Routman E,Phillips CA (1995) Separating population structure from population history: a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum. Genetics, 140, 767-782.
Waples RS (1991) Pacific salmon, Oncorhynchus spp., and the definition of “species” under the Endangered species Act. Marine Fisheries Rev., 53, 11-22.
Weir BS,Cockerham CC (1984) Estimating F-statistic for the analysis of population structure. Evolution, 38, 1358-1370.
Weiss S,Antunes A,Schlötterer C,Alexandrino P (2000) Mitochondrial haplotype diversity among Portuguese brown trout Salmo trutta L. populations: relevance to the post-Pleistocene recolonization of northern Europe. Mol. Ecol., 9, 691-698.
Weiss S,Schlötterer C,Waidbacher H,Jungwirth M (2001) Haplotype (mtDNA) diversity of brown trout Salmo trutta L. in tributaries of the Austrian Danube: Massive introgression of Atlantic basin fish-by man or nature? Mol. Ecol., 10, 1241-1246.
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Antunes, A., Faria, R., Weiss, S. et al. Complex evolutionary history in the brown trout: Insights on the recognition of conservation units. Conservation Genetics 2, 337–347 (2001). https://doi.org/10.1023/A:1012518112891
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DOI: https://doi.org/10.1023/A:1012518112891