Abstract
A simple and accurate method is described for measurement of 1 J C′N splittings in isotopically enriched proteins. The method is of the quantitative J correlation type, and the 1 J C′N splitting is derived from the relative intensity in two 3D TROSY-HNCO spectra with 1 J C′N dephasing intervals of ∼1/(21 J C′N) (reference intensity) and ∼1/1 J C′N (residual intensity). If the two spectra are recorded under identical conditions and with the same number of scans, the random error in the 1 J C′N value extracted in this manner is inversely related to the signal-to-noise (S/N) in the reference spectrum. A S/N of 30:1 in the reference spectrum yields random errors of less than 0.2 Hz in the extracted 1 J C′N value. Dipolar couplings obtained from the difference in 1 J C′N splitting in the isotropic and liquid crystalline phase for the C-terminal domain of calmodulin are in excellent agreement with its 1.68-Å crystal structure, but agree considerably less with the 2.2-Å structure.
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Babu, Y.S., Bugg, C.E. and Cook, W.J. (1988) J. Mol. Biol., 204, 191–204.
Ban, C., Ramakrishnan, B., Ling, K.Y., Kung, C. and Sundaralingam, M. (1994) Acta Crystallogr., D50, 50–63.
Barrientos, L.G., Dolan, C. and Gronenborn, A.M. (2000) J. Biomol. NMR, 16, 329–337.
Bastiaan, E.W., Maclean, C., van Zijl, P.C.M. and Bothner-By, A.A. (1987) Annu. Rep. NMR Spectrosc., 19, 35–77.
Bax, A., Vuister, G.W., Grzesiek, S., Delaglio, F., Wang, A.C., Tschudin, R. and Zhu, G. (1994) Methods Enzymol., 239, 79–105.
Clore, G.M., Starich, M.R., Bewley, C.A., Cai, M.L. and Kuszewski, J. (1999) J. Am. Chem. Soc., 121, 6513–6514.
Clore, G.M., Starich, M.R. and Gronenborn, A.M. (1998) J. Am. Chem. Soc., 120, 10571–10572.
Cordier, F. and Grzesiek, S. (1999) J. Am. Chem. Soc., 121, 1601–1602.
Cornilescu, G., Ramirez, B.E., Frank, M.K., Clore, G.M., Gronenborn, A.M. and Bax, A. (1999) J. Am. Chem. Soc., 121, 6275–6279.
Delaglio, F., Grzesiek, S., Vuister, G.W., Zhu, G., Pfeifer, J. and Bax, A. (1995) J. Biomol. NMR, 6, 277–293.
Delaglio, F., Kontaxis, G. and Bax, A. (2000) J. Am. Chem. Soc., 122, 2142–2143.
Drohat, A.C., Tjandra, N., Baldisseri, D.M. and Weber, D.J. (1999) Protein Sci., 8, 800–809.
Fleming, K., Gray, D., Prasannan, S. and Matthews, S. (2000) J. Am. Chem. Soc., 122, 5224–5225.
Grzesiek, S. and Bax, A. (1993) J. Biomol. NMR, 3, 185–204.
Hansen, M.R., Mueller, L. and Pardi, A. (1998) Nat. Struct. Biol., 5, 1065–1074.
Juranic, N., Ilich, P.K. and Macura, S. (1995) J. Am. Chem. Soc., 117, 405–410.
Kontaxis, G., Clore, G.M. and Bax, A. (2000) J. Magn. Reson., 143, 184–196.
Logan, T.M., Olejniczak, E.T., Xu, R.X. and Fesik, S.W. (1993) J. Biomol. NMR, 3, 225–231.
Losonczi, J.A., Andrec, M., Fischer, M.W.F. and Prestegard, J.H. (1999) J. Magn. Reson., 138, 334–342.
Ottiger, M. and Bax, A. (1998) J. Am. Chem. Soc., 120, 12334–12341.
Ottiger, M., Delaglio, F. and Bax, A. (1998) J. Magn. Reson., 131, 373–378.
Ottiger, M., Tjandra, N. and Bax, A. (1997) J. Am. Chem. Soc., 119, 9825–9830.
Permi, P. and Annila, A. (2000) J. Biomol. NMR, 16, 221–227.
Pervushin, K.V., Wider, G. and Wüthrich, K. (1998) J. Biomol. NMR, 12, 345–348.
Prosser, R.S., Losonczi, J.A. and Shiyanovskaya, I.V. (1998) J. Am. Chem. Soc., 120, 11010–11011.
Salzmann, M, Wider, G., Pervushin, K., Senn, H. and Wüthrich, K. (1999) J. Am. Chem. Soc., 121, 844–848.
Sanders, C.R. and Schwonek, J.P. (1992) Biochemistry, 31, 8898–8905.
Sørensen, M.D., Meissner, A. and Sørensen, O.W. (1997) J. Biomol. NMR, 10, 181–186.
Tjandra, N. and Bax, A. (1997) Science, 278, 1111–1114.
Tjandra, N., Omichinski, J.G., Gronenborn, A.M., Clore, G.M. and Bax, A. (1997) Nat. Struct. Biol., 4, 732–738.
Tolman, J.R., Flanagan, J.M., Kennedy, M.A. and Prestegard, J.H. (1995) Proc. Natl. Acad. Sci. USA, 92, 9279–9283.
Wang, Y.X., Marquardt, J.L., Wingfield, P., Stahl, S.J., Lee-Huang, S., Torchia, D. and Bax, A. (1998) J. Am. Chem. Soc., 120, 7385–7386.
Zweckstetter, M. and Bax, A. (2000) J. Am. Chem. Soc., 122, 3791–3792.
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Chou, J.J., Delaglio, F. & Bax, A. Measurement of one-bond 15N-13C′ dipolar couplings in medium sized proteins. J Biomol NMR 18, 101–105 (2000). https://doi.org/10.1023/A:1008358318863
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DOI: https://doi.org/10.1023/A:1008358318863