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Characterization of a small GTP-binding protein of the rab 5 family in Mesembryanthemum crystallinum with increased level of expression during early salt stress

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Abstract

A cDNA encoding a member of the Ypt/Rab family of small GTP-binding proteins was cloned from the facultative CAM plant Mesembryanthemum crystallinum. Mcrab5b includes an open reading frame of 201 amino acids. The deduced amino acid sequence shows 91% similarity to LjRAB5b isolated from Lotus japonicus. The amino acid sequence of McRAB5b provides interesting features suggesting that McRAB5b and its homologue from Lotus japonicus represent a new subclass of Ypt/Rab proteins. The fact that proteins like McRAB5b and LjRAB5b were only found in plants and not in yeast or vertebrates suggests that they have plant-specific functions. The expression of Mcrab5b as investigated by northern blot hybridization and RT-PCR was stimulated under salt stress. After heterologous expression in Escherichia coli an antibody was raised against recombinant McRAB5b protein. Western blot analysis revealed that McRAB5b was bound to membranes. It is present in a monomeric and a dimeric form in vitro and in vivo. In vitro only the monomeric protein exhibits a binding capacity for radiolabelled GTP, while the dimer is unable to do so, indicating that the activity may be regulated by monomer/dimer transition.

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References

  • Adams, P., Nelson, D.E., Yamada, S., Chmara, W., Jensen, R.G., Bohnert, H.J. and Griffith, H. 1998. Tanksley Review No. 97: Growth and development of Mesembryanthemum crystallinum (Aizoaceae). New Phytol. 138: 171–190.

    Google Scholar 

  • Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. 1997. Gapped BLAST and PSIBLAST: a new generation of protein database search programs. Nucl. Acids Res. 25: 3389–3402.

    Google Scholar 

  • Balch, W.E. 1989. Small GTP-binding proteins in vesicular transport. J. Biol. Chem. 264: 16965–16968.

    Google Scholar 

  • Baur, B., Fischer, K., Winter, K. and Dietz, K.J. 1994. cDNA sequences of a protein kinase from the halophyte Mesembryanthemum crystallinum L. encoding a SNF-1 homolog. Plant Physiol. 106: 1225–1226.

    Google Scholar 

  • Bischoff, F., Molendijk, A., Rajendrakumar, C.S.V. and Palme, K. 1999. GTP-binding proteins in plants. Cell Mol. Life Sci. 55: 233–256.

    Google Scholar 

  • Boguski, M.S. and McCormick, F. 1993. Proteins regulating Ras and its relatives. Nature 366: 643–654.

    Google Scholar 

  • Borg, S. and Poulsen, C. 1994. Molecular analysis of two Ypt/Rabrelated sequences isolated from soybean (Glycine max) DNA libraries. Plant Mol. Biol. 26: 175–187.

    Google Scholar 

  • Borg, S., Brandstrup, B., Jensen, T.J. and Poulsen, C. 1997. Identification of new protein species among 33 different small GTP-binding proteins encoded by cDNAs from Lotus japonicus, and expression of corresponding mRNAs in developing root nodules. Plant J 11: 237–250.

    Google Scholar 

  • Bourne, H.R., Sanders, D.A. and McCormick, F. 1991. The GTPase superfamily: conserved structure and molecular mechanism. Nature 349: 117–127.

    Google Scholar 

  • Bremberger, C., Haschke, H.P. and Lüttge, U. 1988. Separation and purification of the tonoplast ATPase and pyrophosphatase from CAM-plants with constitutive and inducible CAM. Planta 175: 465–470.

    Google Scholar 

  • Brennwald, P. and Novick, P. 1993. Interaction of three domains distinguishing the Ras-related GTP-binding proteins Ypt1 and Sec4. Nature 362: 560–563.

    Google Scholar 

  • Chavrier, P., Parton, R.G., Hauri, H.P., Simons, K. and Zerial, M. 1990. Localization of low molecular weight GTP-binding proteins to exocytic and endocytic compartments. Cell 62: 317–329.

    Google Scholar 

  • Chavrier, P., Gorvel, J.-P., Stelzer, E., Simons, K., Gruenberg, J. and Zerial, M. 1991. Hypervariable C-terminal domain of rab proteins acts as a targeting signal. Nature 353: 769–772.

    Google Scholar 

  • Cheon, C.I., Lee, N.G., Siddique, A.B., Bal, A.K. and Verma, D.P. 1993. Roles of plant homologs of Rab1p and Rab7p in the biogenesis of the peribacteroid membrane, a subcellular compartment formed de novo during root nodule symbiosis. EMBO J. 12: 4125–4135.

    Google Scholar 

  • Cherfils, J., Menetrey, J., Le Bras, G., Janoueix-Lerosey, I., De Gunzburg, J., Garel, J.R. and Auzat, I. 1997. Crystal structures of the small G protein Rap2A in complex with its substrate GTP, with GDP and with GTPgammaS. EMBO J. 16: 5582–5591.

    Google Scholar 

  • Cushman, J.C., Meyer, G., Michalowski, C.B., Schmitt, J.M. and Bohnert, H.J. 1989. Salt stress leads to the differential expression of two isogenes for phosphoenolpyruvate carboxylase during Crassulacean acid metabolism induction in the common ice plant. Plant Cell 1: 715–725.

    Google Scholar 

  • Dallmann, G., Sticher, L., Marshallsay, C. and Nagy, F. 1992. Molecular characterization of tobacco cDNAs encoding two small GTP-binding proteins. Plant Mol Biol. 19: 847–857.

    Google Scholar 

  • Dietz, K.-J., Rudloff, S., Ageorges, A., Eckerskorn, C., Fischer, K. and Arbinger, B. 1995. Subunit E of the vacuolar HCATPase of Hordeum vulgare L.: cDNA cloning, expression and immunological analysis. Plant J. 8: 521–529.

    Google Scholar 

  • Dietz, K.J. and Arbinger, B. 1996. cDNA sequence and expression of subunit E of the vacuolar (C)-ATPase in the inducible Crassulacean acid metabolism plant Mesembryanthemum crystallinum. Biochim. Biophys. Acta 1281: 134–138.

    Google Scholar 

  • Doohan, M.E. and Palewitz, B.A. 1980. Microtubules and coated vesicles in guard-cell protoplasts of Allium cepa L. Planta 140: 389–401.

    Google Scholar 

  • Fisslthaler, B., Meyer, G., Bohnert, H.J. and Schmitt, J.M. 1995. Age-dependent induction of pyruvate orthophosphate dikinase in Mesembryanthemum crystallinum L. Planta 196: 492–500.

    Google Scholar 

  • Guex, N. and Peitsch, M.C. 1997. SWISS-MODEL and the Swiss-Pdb Viewer: an environment for comparative protein modelling. Electrophoresis 18: 2714–2723.

    Google Scholar 

  • Gustinich, S., Manfioletti, G., del Sal, G. and Schneider, C. 1991. A fast method for high quality genomic DNA extraction from whole human blood. BioTechniques 11: 298–302.

    Google Scholar 

  • Hall, A. 1990. The cellular functions of small GTP-binding proteins. Science 249: 635–640.

    Google Scholar 

  • Ito, Y., Yamasaki, K., Iwahara, I., Terada, T., Kamiya, A., Shirouzu, M., Muto, Y., Kawai, G., Yokoyama, S., Laue, E.D., Walchli, M., Shibata, T., Nishimura, S. and Miyazawa, T. 1997. Regional polysterism in the GTP-bound form of the human c-Ha-Ras protein. Biochemistry 36: 9109–9119.

    Google Scholar 

  • Jones, T.L., Simonds, W.F., Merendino, J.J., Brann, M.R. and Spiegel, A.M. 1990. Myristoylation of an inhibitory GTPbinding protein α subunit is essential for its membrane attachment. Proc. Natl. Acad. Sci. USA 87: 568–572.

    Google Scholar 

  • Kahn, R.A. 1995. The arf subfamily. In: M. Zerial and L.A. Huber (Eds.), Guidebook to Small GTPases, Oxford University Press, Oxford, pp. 429–433.

    Google Scholar 

  • Kamada, I., Yamauchi, S., Youseffian, S. and Sano, H. 1992. Transgenic tobacco plants expressing rpg1, a gene encoding a ras-related GTP-binding protein from rice, show distinct morphological characteristics. Plant J. 2: 799–807.

    Google Scholar 

  • Kieffer, F., Simon-Plas, F., Maume, B.F. and Blein, J.-P. 1997. Tobacco cells contain a protein immunologically related to the small G protein Rac2 and involved in elicitor induced oxidative burst. FEBS Lett. 403: 149–153.

    Google Scholar 

  • Koch, C.A., Anderson, D., Moran, M.F., Ellis, C. and Pawson, T. 1991. SH2 and SH3 domains: elements that control interactions of cytoplasmic signaling proteins. Science 252: 668–674.

    Google Scholar 

  • Laemmli, U.K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680–685.

    Google Scholar 

  • Legendre, L., Rueter, S., Heinstein, P.F. and Low, P.S. 1993. Characterization of the oligogalacturonide-induced oxidative burst in cultured soybean (Glycine max) cells. Plant Physiol. 102: 233–240.

    Google Scholar 

  • Liang, P. and Pardee, A.B. 1992. Differential display of eukariotic messenger RNA by means of the polymerase chain reaction. Science 257: 967–971.

    Google Scholar 

  • Li, G. and Stahl, P.D. 1993. Structure-function relationship of the small GTPase rab5. J. Biol. Chem. 268: 24475–24480.

    Google Scholar 

  • Lin, Y. and Yang, Z. 1997. Inhibition of pollen tube elongation by microinjected anti-Rop1Ps antibodies suggests a crucial role for Rho-type GTPases in the control of tip growth. Plant Cell 9: 1647–1659.

    Google Scholar 

  • Lorraine, A.E., Yalovsky, S., Fabry, S. and Gruissem, W. 1996. Tomato Rab1A homologs as molecular tools for studying Rab geranylgeranyl transferase in plant cells. Plant Physiol. 110: 1337–1347.

    Google Scholar 

  • Löw, R., Rockel, B., Kirsch, M., Ratajczak, R., Hörtensteiner, S., Martinoia, E., Lüttge, U. and Rausch, T. 1996. Early salt stress effects on the differential expression of vacuolar HC-ATPase genes in roots and leaves of Mesembryanthemum crystallinum. Plant Physiol. 110: 259–265.

    Google Scholar 

  • Marshall, M.S. 1993. The effector interactions of p21ras. Trends Biochem. Sci. 18: 250–254.

    Google Scholar 

  • Michalowski, C.B., Olson, S.W., Piepenbrock, M., Schmitt, J.M. and Bohnert, H.J. 1989. Time course of mRNA induction elicited by salt stress in the common ice plant (Mesembryanthemum crystallinum). Plant Physiol. 89: 811–816.

    Google Scholar 

  • Mikami, K., Ichimura, K., Iuch, S., Yamaguchi-Shinozaki, K. and Shinozaki, K. 1997. Molecular characterization of a cDNA encoding a novel small GTP-binding protein from Arabidopsis thaliana. Biochim. Biophys. Acta 1354: 99–104.

    Google Scholar 

  • Moore, I. Diefenthal, T., Zarsky, V., Schell, J. and Palme, K. 1997. A homolog of the mammalian GTPase Rab2 is present in Arabidopsis and is expressed predominantly in pollen grains and seedlings. Proc. Natl. Acad. Sci USA 94: 762–767.

    Google Scholar 

  • Nagano, Y., Murai, N., Matsuno, R. and Sasaki, Y. 1993. Isolation and characterization of cDNAs that encode eleven small GTPbinding proteins from Pisum sativum. Plant Cell Psysiol 34: 447–455.

    Google Scholar 

  • Nicolás, C., Nicolás, G. and Rodríguez, D. 1998. Transcripts of a gene encoding a small GTP-binding protein from Fagus sylvatica are induced by ABA and accumulated in the embryonic axis of dormant seeds. Plant Mol. Biol. 36: 487–491.

    Google Scholar 

  • O'Mahony, P.J. and Oliver, M.J. 1999. Characterization of a desiccation-responsive small GTP-binding protein (Rab2) from the desiccation-tolerant grass Sporolobus stapfianus. Plant Mol. Biol. 39: 809–821.

    Google Scholar 

  • Park, Y.S., Song, O., Kwak, J.M., Hong, S.W., Lee, H.H. and Nam, H.G. 1994. Functional complementation of a yeast vesicular transport mutation ypt-1 by a Brassica napus cDNA clone encoding a small GTP-binding protein. Plant Mol. Biol. 26: 1725–1735.

    Google Scholar 

  • Pfeffer, S.R. 1992. GTP-binding proteins in intracellular transport. Trends Cell Biol. 2: 41–46.

    Google Scholar 

  • Ramanjulu, S., Kaiser, W. and Dietz, K.-J. 1999. Salt and drought stress differentially affect the accumulation of extracellular proteins in barley. Z. Naturforsch. 54c: 337–347.

    Google Scholar 

  • Sambrook, G., Fritsch, E.F. and Maniatis, T. 1989. Molecular Cloning: A Laboratory Manual, 2nd ed., Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.

    Google Scholar 

  • Sano, H. and Ohashi, Y. 1995. Involvement of small GTPbinding proteins in defense signal-transduction pathways of higher plants. Proc. Natl. Acad. Sci. USA 92: 4138–4144.

    Google Scholar 

  • Stenmark, H., Valencia, A., Martinez, O., Ulrich, O., Goud, B. and Zerial, M. 1994. Distinct structural elements of Rab5 define its functional specificity. EMBO J. 13: 575–583.

    Google Scholar 

  • Terryn, N, Van Montagu, M. and Inzé, D. 1993. GTP-binding proteins in plants. Plant Mol. Biol. 22: 143–152.

    Google Scholar 

  • Thompson, J.D., Higgins, D.G. and Gibson, T.J. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl. Acids Res. 22: 4673–4680.

    Google Scholar 

  • Tsiantis, M.S., Bartholomew, D.M. and Smith, J.A.C. 1996. Salt regulation of transcript levels for the c subunit of leaf vacuolar HC-ATPase in the halophyte Mesembryanthemum crystallinum. Plant J. 9: 729–736.

    Google Scholar 

  • Wei, Y., Zhang, Y., Derewenda, U., Liu, X., Minor, W., Nakamoto, R.K., Somlyo, A.V., Somlyo, A.P. and Derewenda, Z.S. 1997. Crystal structure of RhoA-GDP and its functional implications. Nature Struct Biol. 4: 699–703.

    Google Scholar 

  • Winge, P., Brembu, T. and Bones, A.M. 1997. Cloning and characterization of rac-like cDNAs from Arabidopsis thaliana. Plant Mol. Biol. 35: 483–495.

    Google Scholar 

  • Xing, T., Higgins, V.J. and Blumwald, E. 1997. Race-specific elicitors of Cladosporium fulvum promote translocation of cytosolic components of NADPH oxidase to the plasma membrane of tomato cells. Plant Cell 9: 249–259.

    Google Scholar 

  • Zahraoui, A., Touchot, N., Chardin, P. and Tavitian, A. 1989. The human Rab genes encode a family of GTP-binding proteins related to yeast YPT1 and SEC4 products involved in secretion. J. Biol. Chem. 264: 12394–12401.

    Google Scholar 

  • Zhang, B. and Zheng, Y. 1988. Negative regulation of Rho family GTPases CDC42 and Rac2 by homodimer formation. J. Biol. Chem. 273: 25728–25733.

    Google Scholar 

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Bolte, S., Schiene, K. & Dietz, KJ. Characterization of a small GTP-binding protein of the rab 5 family in Mesembryanthemum crystallinum with increased level of expression during early salt stress. Plant Mol Biol 42, 923–935 (2000). https://doi.org/10.1023/A:1006449715236

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