Skip to main content
Log in

Cloning and characterization of a cDNA encoding topoisomerase II in pea and analysis of its expression in relation to cell proliferation

  • Published:
Plant Molecular Biology Aims and scope Submit manuscript

Abstract

We have isolated and sequenced four overlapping cDNA clones to identify the full-length cDNA for topoisomerase II (PsTopII) from pea. Using degenerate primers, based on the conserved amino acid sequences of other eukaryotic type II topoisomerases, a 680 bp fragment was PCR-amplified with pea cDNA as template. This fragment was used as a probe to screen an oligo-dT-primed pea cDNA library. A partial cDNA clone was isolated that was truncated at the 3′ end. RACE-PCR was employed to isolate the remaining portion of the gene. The total size of PsTopII is 4639 bp with an open reading frame of 4392 bp. The deduced amino acid sequence shows a strong homology to other eukaryotic topoisomerase II (topo II) at the N-terminus end. The topo II transcript was abundant in proliferative tissues. We also show that the level of topo II transcripts could be stimulated by exogenous application of growth factors that induced proliferation in vitro cultures. Light irradiation to etiolated tissue strongly stimulated the expression of topo II. These results suggest that topo II gene expression is up-regulated in response to light and hormones and correlates with cell proliferation. Besides, we have also isolated and analysed the 5′-flanking region of the pea TopII gene. This is first report on the isolation of a putative promoter for topoisomerase II from plants.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Argiiello-Astorga, G. and Herrera-Estrella, L. 1998. Evolution of light regulated plant promoters. Annu. Rev. Plant Physiol. Plant Mol. Biol. 49: 525-555.

    Google Scholar 

  • Baldi, M.I., Benedetti, P., Mattocia, E. and Tocchini-Valentini, G.P. 1980. In vitro catenation and decatenation of DNA and a novel eukaryotic ATP-dependent topoisomerase. Cell 20: 461-467.

    Google Scholar 

  • Balestrazzi, A., Toscano, I., Bernacchia, G., Luo, M., Otte, S. and Carbonera, D. 1996. Cloning of a cDNA encoding DNA topoisomerase I in Daucus carota and expression analysis in relation to cell proliferation. Gene 183: 183-190.

    Google Scholar 

  • Benedetti, P., Baldi, M.I., Mattoccia, E. and Tocchini-Valentini, G.P. 1983. Purification and characterization of Xenopus laevis topoisomerase II. EMBO J. 2: 1303-1308.

    Google Scholar 

  • Berger, J.M., Gamblin, S., Harrison, S.C. and Wang, J.C. 1996. Structure and mechanism of DNA topoisomerase II. Nature 379: 225-232.

    Google Scholar 

  • Bogre, L., Jonak, C., Mink, M., Meskiene, I., Traas, J., Ha, D.T., Swoboda, I., Plank, C., Wagner, E., Heberle-Bors, E. and Hirt, H. 1996. Developmental and cell cycle regulation of alfalfa NucMs1, a plant homolog of the yeast Nsr1 and mammalian nucleolin. Plant Cell 8: 417-428.

    Google Scholar 

  • Carballo, M., Gine, R., Santos, M. and Puigdoménech, P. 1991. Characterization of topoisomerase I and II activities in nuclear extracts during callogenesis in immature embryos of Zea mays. Plant Mol. Biol. 16: 59-70.

    Google Scholar 

  • Carbonera, D., Rovati, L., Guano, F. and Balestrazzi, A. 1995. Purification and properties of DNA topoisomerase II from Daucus carota cells. J. Exp. Bot. 46: 347-354.

    Google Scholar 

  • Champoux, J.J. 1990. Mechanistic aspects of type I topoisomerases. In: N.R. Cozzarelli and J.C.Wang (Eds.), DNA Topology and its Biological Effects. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, pp. 217-242 (1990).

    Google Scholar 

  • Chiatante, D. and Bryant, J.A. 1994. Activity of DNA topoisomerase I and quiescence of embryo cells in seeds of Pisum sativum L. J. Exp. Bot. 45: 959-965.

    Google Scholar 

  • Chomczynski, P. and Sacchi, N. 1987. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol chloroform extraction. Anal. Biochem. 162: 156-159.

    Google Scholar 

  • Degregori, J., Kowallik, T. and Nevins, J.R. 1995. Cellular targets for activation by the E2F-1 transcription factor include DNA synthesis and G1/S-regulatory genes. Mol. Cell. Biol. 15: 4215-4224.

    Google Scholar 

  • Dong, Z., Birrer, H.J., Watts, R.G., Matrision, L.M. and Colburn, N.H. 1994. Blocking of tumor promoter-induced AP-1 activity inhibits transformation in JB-6 mouse epidermal cells. Proc. Natl. Acad. Sci. USA 91: 609-613.

    Google Scholar 

  • Downes, C.S., Clarke, D.J., Mullinger, A.M., Gimenez-Abian, J.F., Creighton, A.M. and Johnson, R.T. 1994. A topoisomerase II dependent G-2 cycle checkpoint inmammalian cells. Nature 372: 467-470.

    Google Scholar 

  • Drake, F.H., Zimmerman, J.P., McCabe, F.L., Bartus, H.F., Per, S.R., Sullivan, D.M., Ross, W.E., Mattern, M.R., Johnson, R.K., Crooke, S.T. and Mirabelli, C.K. 1987. Purification of topoisomerase II from amsacrine-resistant P388 leukemia cells: evidence for two forms of the enzyme. J. Biol. Chem. 262: 16739-16747.

    Google Scholar 

  • Duguet, M., Lavenot, C., Harper, F., Mirambeau, G. and De Recondo, A.M. 1983. DNA topoisomerases from rat liver: physiological variations. Nucl. Acids Res. 11: 1059-1075.

    Google Scholar 

  • Fukata, H. and Fukasawa, H. 1982. Enzyme activity and processivity of two distinct DNA topoisomerases from cauliflower inflorescence. J. Biochem. 91: 1337-1342.

    Google Scholar 

  • Fukata, H., Ohgami, K. and Fukasawa, H. 1986. Isolation and characterization of DNA topoisomerase II from cauliflower in-florescences. Plant Mol. Biol. 6: 137-144.

    Google Scholar 

  • Gellert, M. 1981. DNA topoisomerases. Annu. Rev. Biochem. 50: 879-910.

    Google Scholar 

  • Giaever, G., Lynn, R., Goto, T. and Wang, J.C. 1986. The complete nucleotide sequence of the structural gene TOP2 of yeast DNA topoisomerase II. J. Biol. Chem. 261: 12448-12454.

    Google Scholar 

  • Goto, T. and Wang, J.C. 1982. Yeast DNA topoisomerase II: an ATP-dependent type II topoisomerase that catalyzes the catenation, decatenation, unknotting and relaxation of double-stranded DNA rings. J. Biol. Chem. 257: 5866-5872.

    Google Scholar 

  • Goto, T., Laipis, P. and Wang, J.C. 1984. The purification and characterization of DNA topoisomerase I and II of the yeast Saccharomyces cerevisiae. J. Biol. Chem. 259: 10422-10429.

    Google Scholar 

  • Gutierrez, C. 1998. The retinoblastoma pathway in plant cell cycle and development. Curr. Opin. Plant Biol. 1: 492-497.

    Google Scholar 

  • Halligan, B.D., Edwards, K.A. and Liu, L.F. 1985. Purification and characterization of a type II DNA topoisomerase from bovine calf thymus. J. Biol. Chem. 260: 2475-2482.

    Google Scholar 

  • Heck, M.M.S. and Earnshaw, W.C. 1986. Topoisomerase II: a specific marker for cell proliferation. J. Cell. Biol. 103: 2569-2581.

    Google Scholar 

  • Hochhauser, D., Stanway, C.A., Harris, A.L. and Hickson, I.D. 1992. Cloning and characterization of the 50-flanking region of the human topoisomerase II_ gene. J. Biol. Chem. 267: 18961-18965.

    Google Scholar 

  • Hsieh, T.S. 1983. Purification and properties of type II DNA topoisomerase from embryos of Drosophila melanogaster. Meth. Enzymol. 100: 161-170.

    Google Scholar 

  • Hsieh, T.S. 1990. Mechanistic aspects of type II topoisomerases. In: N.R. Cozzarelli and J.C. Wang (Eds.), DNA Topology and its Biological Effects, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, pp. 243-263.

    Google Scholar 

  • Hsieh, T.S. and Brutlag, D. 1980. ATP-dependent DNA topoisomerase from D. melanogaster reversibly catenates duplex DNA rings.Cell 21: 115-125.

    Google Scholar 

  • Hwong, C.L., Chen, M.S. and Hwang, J. 1989. Phorbol ester transiently increases topoisomerase I mRNA levels in human skin fibroblasts. J. Biol. Chem. 264: 14923-14926.

    Google Scholar 

  • Jenkins, J.R., Ayton, P., Jones, T., Davies, S.L., Simmons, D.L., Harris, A.L., Sheer, D. and Hickson, I.D. 1992. Isolation of cDNA clones encoding the beta isozyme of human DNA topoisomerase II and location of the gene to chromosome 3p24. Nucl. Acids Res. 20: 5587-5592.

    Google Scholar 

  • Lam, E. and Chua, N.H. 1987. Chloroplast DNA gyrase and in vitro regulation of transcription by template topology and novobiocin. Plant Mol. Biol. 8: 415-424.

    Google Scholar 

  • Latchwan, D.S. 1998. Eukaryotic Transcription Factors. Academic Press, San Diego/London, pp. 191-232.

    Google Scholar 

  • Levi, M., Sparvoli, E. and Corbetta, N. 1994. An antibody against a sequence of human topoisomerase II gives different immunofluorescence patterns in quiscent and proliferative nuclei of Pisum sativum L. J. Exp. Bot. 45: 1157-1162.

    Google Scholar 

  • Liu, L.F., Liu, C.C. and Alberts, B.M. 1980. Type II DNA topoisomerases: enzymes that can unknot a topologically knotted DNA molecule via a reversible double-strand break. Cell 19: 697-707.

    Google Scholar 

  • Lynn, R., Giaever, G., Swanberg, S.L. andWang, J.C. 1986. Tandem regions of yeast DNA topoisomerase II share homology with different subunits of bacterial gyrase. Science 233: 647-649.

    Google Scholar 

  • Madhusudan, K. and Nagaraja, V. 1996. Alignment and phylogenetic analysis of type II DNA topoisomerases. J. Biosci. 21: 613-629.

    Google Scholar 

  • Miller, K.G., Liu, L.F. and Englund, P.T. 1981. A homogeneous type II DNAtopoisomerase from HeLa cell nuclei. J. Biol. Chem. 256: 9334-9339.

    Google Scholar 

  • Ng, S.W., Eder, J.P., Schnipper, L.E. and Chan, T.W. 1995. Molecular cloning and characterization of the promoter for the chinese hamster DNA topoisomerase II_ gene. J. Biol. Chem. 270: 25850-25858.

    Google Scholar 

  • Nolan, J.M., Lee, M.P., Wyckoff, E. and Hsieh, T.S. 1986. Isolation and characterization of the gene encoding Drosophila DNA topoisomerase II. Proc. Natl. Acad Sci. USA 83: 3664-3668.

    Google Scholar 

  • Osheroff, N. 1989. Biochemical basis for the interactions of type I and type II topoisomerases with DNA. Pharmac. Ther. 41: 223-241.

    Google Scholar 

  • Pearson, W.R. and Lipman, D.J. 1988. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85: 2444-2448.

    Google Scholar 

  • Pyke, K.A., Marrison, J. and Leech, R.M. 1989. Evidence for a type II topoisomerase in wheat chloroplasts. FEBS Lett. 242: 305-308.

    Google Scholar 

  • Ramaswamy, O., Pal, S., Guha-Mukherjee, S. and Sopory, S.K. 1983. Presence of glyoxalase in pea. Biochem. Int. 7: 307-318.

    Google Scholar 

  • Reddy, M.K., Nair, S. and Tewari, K.K. 1998. Cloning, expression and characterization of a gene which encodes a topoisomerase I with positive supercoiling activity in pea. Plant Mol. Biol. 37: 773-784.

    Google Scholar 

  • Riou, G.F., Gabillot, M., Barrois, M., Breitburd, F. and Orth, G. 1985. A type II DNA topoisomerase and a catenating protein from the transplantable VX2 carcinoma. Eur. J. Biochem. 146: 483-488.

    Google Scholar 

  • Riou, J.F., Gabillot, M., Philippe, M., Schrevel, J. and Riou, G. 1986. Purification and characterization of Plasmodium berghei DNA topoisomerases I and II: drug action, inhibition of decatenation and relaxation and stimulation of DNA cleavage. Biochemistry 25: 1471-1479.

    Google Scholar 

  • Rudenko, G.N. 1991. Plant DNA-topoisomerase type-II: isolation, characterization and properties. Molekulyarn. Biol. 25: 1125-1135.

    Google Scholar 

  • Sambrook, J., Fritsch, E.F. and Maniatis, T. 1989. Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.

    Google Scholar 

  • Sanger, F., Nicklen, S. and Coulson, A.R. 1977. DNA sequencing with chain terminating inhibitors. Proc. Natl. Acad. Sci. USA 74: 5463-5467.

    Google Scholar 

  • Schomburg, V. and Grosse, F. 1986. Purification and characterization of DNA topoisomerase II from calf thymus associated 137 with polypeptides of 175 and 150 kDa. Eur. J. Biochem. 160: 451-457.

    Google Scholar 

  • Shelton, E.R., Osheroff, N. and Brutlag, D.L. 1983. DNA topoisomerase II from Drosophila melanogaster: purification and physical characterization. J. Biol. Chem. 258: 9530-9535.

    Google Scholar 

  • Shlomai, J. and Zadok, A. 1983. Reversible decatenation of kinetoplast DNA by a DNA topoisomerase from trypanosomatids. Nucl. Acids Res. 11: 4019-4034.

    Google Scholar 

  • Sullivan, D.M., Glisson, B.S., Hodges, P.K., Smallwood-Kentro, S. and Ross, W.E. 1986. Proliferation dependence of topoisomerase II mediated drug action. Biochemistry 25: 2248-2256.

    Google Scholar 

  • Terzaghi, W.B. and Cashmore, A.R. 1995. Light regulated transcription. Annu. Rev. Plant Physiol. Plant Mol. Biol. 46: 445-474.

    Google Scholar 

  • Thampson, B.F. 1959. Far-red reversal of internode stimulating effect of red light on peas. Am. J. Bot. 48: 256-261.

    Google Scholar 

  • Tommasi, S. and Pfeifer, G.P. 1995. In vivo structure of human cdc2 promoter: release of a p130-E2F-4 complex from sequences immediately upstream of the transcription initiation site coincides with induction of cdc2 expression. Mol. Cell. Biol. 15: 6901-6913.

    Google Scholar 

  • Tong, C.G., Reichler, S., Blumenthal, S., Balk, J., Hsieh, H.L. and Roux, S.J. 1997. Light regulation of the abundance of mRNA encoding a nucleolin-like protein localized in the nucleoli of pea nuclei. Plant Physiol. 114: 643-652.

    Google Scholar 

  • Tsai-Pflugfelder, M., Liu, L.F., Liu, A.A., Tekwey, K.M., Whang-Peng, J., Knutsen, T., Heubner, K., Croce, C.N. and Wang, J.C. 1988. Cloning and sequencing of cDNA encoding human DNA topoisomerase II and localization of the gene to chromosome region 17q21-22. Proc. Natl. Acad. Sci. USA 85: 7177-7181.

    Google Scholar 

  • Uemura, T., Morikawa, K. and Yanagida, M. 1986. The nucleotide sequence of the fission yeast DNA topoisomerase II gene: structural and functional relationships to other DNA topoisomerases. EMBO J. 5: 2355-2361.

    Google Scholar 

  • Voelkel-Meiman, K., DiNardo, S. and Sternglanz, R. 1986. Molecular cloning and genetic mapping of the DNA topoisomerase II gene of Saccharomyces cerevisiae. Gene 42: 193-199.

    Google Scholar 

  • Vosberg, H.P. 1985. DNA topoisomerases: enzymes that control DNA conformation. Curr. Top. Microbiol. Immunol. 114: 19-102.

    Google Scholar 

  • Wang, J.C. 1982. DNA topoisomerases. In: S. Roberts and S. Linn (Eds.), Nucleases, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, pp. 41-57.

    Google Scholar 

  • Wang, J.C. 1985. DNA topoisomerases. Annu. Rev. Biochem. 54: 665-697.

    Google Scholar 

  • Wang, J.C. 1996. DNA topoisomerases. Annu. Rev. Biochem. 65: 635-692.

    Google Scholar 

  • Wyckoff, E., Natalie, D., Nolan, J.M., Lee, M. and Hsieh, T.S. 1988. Structure of a Drosophila DNA topoisomerase II gene: nucleotide sequence and homology among topoisomerases II. J. Mol. Biol. 205: 1-13.

    Google Scholar 

  • Xie, S. and Lam, E. 1994a. Abundance of nuclear DNA topoisomerase II is correlated with proliferation in Arabidopsis thaliana. Nucl. Acids Res. 22: 5729-5736.

    Google Scholar 

  • Xie, S. and Lam, E. 1994b. Characterization of a DNA topoisomerase II cDNA from Arabidopsis thaliana. Plant Physiol. 106: 1701-1702.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Reddy, M., Nair, S., Tewari, K.K. et al. Cloning and characterization of a cDNA encoding topoisomerase II in pea and analysis of its expression in relation to cell proliferation. Plant Mol Biol 41, 125–137 (1999). https://doi.org/10.1023/A:1006352820788

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1023/A:1006352820788

Navigation