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Analysis of the isopentenyl diphosphate isomerase gene family from Arabidopsis thaliana

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Abstract

Two Arabidopsis thaliana cDNAs (IPP1 and IPP2) encoding isopentenyl diphosphate isomerase (IPP isomerase) were isolated by complementation of an IPP isomerase mutant strain of Saccharomyces cerevisiae. Both cDNAs encode enzymes with an amino terminus that may function as a transit peptide for localization in plastids. At least 31 amino acids from the amino terminus of the IPP1 protein and 56 amino acids from the amino terminus of the IPP2 protein are not essential for enzymatic activity. Genomic DNA blot analysis confirmed that IPP1 and IPP2 are derived from a small gene family in A. thaliana. Based on northern analysis expression of both cDNAs occurs predominantly in roots of mature A. thaliana plants grown to the pre-flowering stage.

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References

  1. Anderson MS, Muehlbacher M, Street IP, Proffitt J, Poulter CD: Isopentenyl diphosphate:dimethylallyl diphosphate isomerase: an improved purification of the enzyme and isolation of the gene from Saccharomyces cerevisiae. J Biol Chem 264: 19169–19175 (1989).

    PubMed  Google Scholar 

  2. Bach TJ: Some new aspects of isoprenoid biosynthesis in plants-A Review. Lipids 30: 191–202 (1995).

    PubMed  Google Scholar 

  3. Bartley GE, Skolnik PA: Plant carotenoids: pigments for photoprotection, visual attraction, and human health. Plant Cell 7: 1027–1038 (1995).

    PubMed  Google Scholar 

  4. Becker DM, Guarente L: High-efficiency transformation of yeast by electroporation. Meth Enzymol 194: 182–186 (1991).

    PubMed  Google Scholar 

  5. Blanc VM, Pichersky E: Nucleotide sequence of a Clarkia breweri cDNA clone of Ipi1, a gene encoding isopentenyl pyrophosphate isomerase. Plant Physiol 108, 855–856 (1995).

    PubMed  Google Scholar 

  6. Bradford MM: A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72: 248–254 (1976).

    Article  PubMed  Google Scholar 

  7. Dogbo O: Purification of isopentyl pyrophosphate isomerase and geranylgeranyl pyrophosphate synthase from Capsicum chromoplasts by affinity chromatography. Biochim Biophysica Acta 920: 140–148 (1987).

    Google Scholar 

  8. Feinberg AP, Vogelstein BA: Technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal Biochem 132: 6–13 (1983).

    PubMed  Google Scholar 

  9. Gavel Y, von Heijne G: A conserved cleavage-site motif in chloroplast transit peptides. FEBS Lett 261: 455–458 (1990).

    Article  PubMed  Google Scholar 

  10. Goldstein JL, Brown MS: Regulation of the mevalonate pathway. Nature 343: 425–430 (1990).

    Article  PubMed  Google Scholar 

  11. Hahn FM, Poulter CD: Isolation of Schizosaccharomyces pombe isopentenyl diphosphate isomerase cDNA clones by complementation and synthesis of the enzyme in Escherichia coli. J Biol Chem 270: 11298–11303 (1995).

    PubMed  Google Scholar 

  12. Hahn FM, Baker JA, Poulter CD: Open reading frame 176 in the photosynthetic gene cluster of Rhodobacter capsulatus encodes idi, a gene for isopentenyl diphosphate isomerase. Bacteriology 178: 619–624 (1996).

    Google Scholar 

  13. Kutchen TM: Alkaloid biosynthesis: the basis for metabolic engineering of medicinal plants. Plant Cell 7: 1059–1070 (1995).

    PubMed  Google Scholar 

  14. Lütcke HA, Chow KC, Mickel FS, Moss KA, Kern HF, Scheele G: Selection of AUG initiation codons differs in plants and animals. EMBO J 6: 43–48 (1987).

    PubMed  Google Scholar 

  15. Lutzow M: The isopentyl-diphosphate delta-isomerase and its relation to the phytoene synthase complex in daffodil chromoplasts. Biochim Biophysica Acta 959: 118–126 (1988).

    Google Scholar 

  16. McGarvey DJ, Croteau R: Terpenoid metabolism. Plant Cell 7: 1015–1026 (1995).

    Article  PubMed  Google Scholar 

  17. Meuhlerbacher M, Poulter CD: Isopentyl-diphosphate isomerase: inactivation of the enzyme with active-site-directed irreversible inhibitors and transition-state analogue. Biochemistry 27: 7315–7328 (1988).

    PubMed  Google Scholar 

  18. Rohmer M, Knani M, Simonin P, Sutter B, Sahm H: Isoprenoid biosynthesis in bacteria, a novel pathway for the early steps leading to isopentyl diphosphate. Biochem J 295: 517–524 (1993).

    PubMed  Google Scholar 

  19. Rose MD, Winston F, Hieter P: Methods in Yeast Genetics: A Laboratory Course Manual, pp. 177–179. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY (1990).

    Google Scholar 

  20. Satterwhite DM: Steroids and isoprenoids. Meth Enzymol 110: 92–99 (1985).

    PubMed  Google Scholar 

  21. Spurgeon SL: Isopentyl pyrophosphate isomerase and prenyltransferase from tomato fruit plastids. Arch Biochem Biophysics 230: 446–454 (1984).

    Google Scholar 

  22. Strathern JN, Higgins DR: Recovery of plasmids from yeast into Escherichia coli: shuttle vectors. Meth Enzymol 194: 319–328 (1991).

    PubMed  Google Scholar 

  23. Street IP, Coffman HR, Baker JA, Poulter CD: Identification of Cys139 andGlu207 as catalytically important groups in the active site of isopentenyl diphosphate:dimethylallyl diphosphate isomerase. Biochemistry 33: 4212–4217 (1994).

    PubMed  Google Scholar 

  24. von Heijne G, Steppuhn J, Herrmann RG: Domain structure of mitochondrial and chloroplast targeting peptides. Eur J Biochem 180: 535–45 (1989).

    PubMed  Google Scholar 

  25. Xaun J, Kowalski J, Chambers AF, Denhardt DT: A human promyelocyte mRNA transiently induced by TPA is homologous to yeast IPP isomerase. Genomics 20: 128–131 (1994).

    Google Scholar 

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Campbell, M., Hahn, F.M., Poulter, C.D. et al. Analysis of the isopentenyl diphosphate isomerase gene family from Arabidopsis thaliana. Plant Mol Biol 36, 323–328 (1998). https://doi.org/10.1023/A:1005935516274

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  • DOI: https://doi.org/10.1023/A:1005935516274

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