Skip to main content
Log in

Transcription factor phosphorylation by a protein kinase associated with chloroplast RNA polymerase from mustard (Sinapis alba)

  • Published:
Plant Molecular Biology Aims and scope Submit manuscript

Abstract

The chloroplast transcription machinery involves multiple components with both catalytic and regulatory functions. Here we describe a serine-specific protein kinase activity that is associated with the major chloroplast RNA polymerase and phosphorylates sigma-like transcription factors in vitro. The kinase activity can be assigned to a 54 kDa polypeptide of partially purified RNA polymerase (KPC, kinase polymerase complex). This polypeptide is also present in a smaller complex that contains several putative polymerase subunits and reveals kinase activity but lacks transcription activity (KC, kinase complex). Although the 54 kDa component could not be chromatographically separated from the rest of this complex without loss of activity, it retained residual kinase activity in an electrophoretic blot assay. The polymerase-associated kinase is itself affected by in vitro phosphorylation and dephosphorylation, which raises the possibility that it is part of a signalling cascade that controls chloroplast transcription in vivo by factor phosphorylation.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Allen JF: Redox control of transcription: Sensors, response regulators, activators and repressors. FEBS Lett 332: 203–207 (1993).

    Google Scholar 

  2. Allison LA, Simon LD, Maliga P: Deletion of rpoB reveals a second distinct transcription system in plastids of higher plants. EMBO J 15: 2802–2809 (1996).

    Google Scholar 

  3. Bauer CE, Bird TH: Regulatory circuits controlling photosynthesis gene expression. Cell 85: 5–8 (1996).

    Google Scholar 

  4. Bennett J: Protein phosphorylation in green plant chloroplasts. Annu Rev Plant Physiol Plant Mol Biol 42: 281–311 (1991).

    Google Scholar 

  5. Bogorad L: Chloroplasts. J Cell Biol 91: 256–270 (1981).

    Google Scholar 

  6. Bogorad L: Replication and transcription of plastid DNA. In: Bogorad L, Vasil IK (eds) The Molecular Biology of Plastids, pp. 93–124. Academic Press, San Diego, FL (1991).

    Google Scholar 

  7. Brahamsha B, Haselkorn R: Identification of multiple RNA polymerase sigma factor homologs in the cyanobacterium Anabaena sp. strain PCC 7120: cloning, expression, and inactivation of the sigB and sigC genes. J Bact 174: 7273–7282 (1992).

    Google Scholar 

  8. Burgess RR, Travers AA, Dunn JJ, Bautz EKF: Factor stimulating transcription by RNA polymerase. Nature 221: 43–46 (1969).

    Google Scholar 

  9. Bülow S, Link G: Sigma-like acticity from mustard (Sinapis alba L.) chloroplasts conferring DNA-binding and transcription specificity to E. coli core RNApolymerase. PlantMol Biol 10: 349–357 (1988).

    Google Scholar 

  10. Carlberg I, Andersson B: Phosphatase activities in spinach thylakoid membranes-Effectors, regulation and location. Photosynth Res 47: 145–156 (1996).

    Google Scholar 

  11. Danon A, Mayfield SP: ADP-dependent phosphorylation regulates RNA-binding in vitro: implications in light-modulated translation. EMBO J 13: 2227–2235 (1994).

    Google Scholar 

  12. Danon A, Mayfield SP: Light-regulated translation of chloroplast messenger RNAs through redox potential. Science 266: 1717–1719 (1994b).

    Google Scholar 

  13. Drapkin R, Reinberg D: The multifunctional TFIIH complex and transcriptional control. Trends Biochem Sci 19: 504–508 (1994).

    Google Scholar 

  14. Eisermann A, Tiller K, Link G: In vitro transcription and DNA binding characteristics of chloroplast and etioplast extracts from mustard (Sinapis alba) indicate differential usage of the psbA promoter. EMBO J 9: 3981–3987 (1990).

    Google Scholar 

  15. Elich TD, Edelman M, Mattoo AK: Dephosphorylation of photosystem II core proteins is light-regulated in vivo. EMBO J 12: 4857–4862 (1993).

    Google Scholar 

  16. Feaver WJ, Gileadi O, Li Y, Kornberg RD: CTD kinase associated with yeast RNA polymerase II initiation factor b. Cell 67: 1223–1230 (1991).

    Google Scholar 

  17. Ferrell JE, Jr, Martin GS: Assessing activities of blotted protein kinases. Meth Enzymol 200: 430–435 (1991).

    Google Scholar 

  18. Fried M, Crothers DM: Equilibria and kinetics of lac repressoroperator interactions by polyacrylamide gel electrophoresis. Nucl Acids Res 9: 6505–6525 (1981).

    Google Scholar 

  19. Gal A, Hauska G, Herrmann R, Ohad I: Interaction between light harvesting chlorophyll-a/b protein (LHCII) kinase and cytochrome b6/f complex. In vitro control of kinase activity. J Biol Chem 265: 19 742–19 749 (1990).

    Google Scholar 

  20. Gillham NW, Boynton JE, Hauser CR: Translational regulation of gene expression in chloroplasts andmitochondria. Annu Rev Genet 28: 71–93 (1994).

    Google Scholar 

  21. Gruissem W, Tonkyn JC: Control mechanisms of plastid gene expression. Crit Rev Plant Sci 12: 19–55 (1993).

    Google Scholar 

  22. Hager DA, Burgess RR: Elution of proteins from sodium dedecyl sulfate-polyacrylamide gels, removal of sodium dodecyl sulfate, and renaturation of enzymatic activity: results with sigma subunit of Escherichia coliRNApolymerase, wheat germ DNA topoisomerase and other enzymes. Anal Biochem 109: 76–86 (1980).

    Google Scholar 

  23. Herrmann RG, Westhoff P, Link G: Chloroplast biogenesis in higher plants. In: Herrmann RG (ed), Cell Organelles, pp. 275–349. Springer-Verlag, Wien/Heidelberg/New York (1992).

    Google Scholar 

  24. Hidaka H, Kobayashi R: Use of protein (serine/threonine) kinase activators and inhibitors to study protein phosphorylation in intact cells. In: Hardie DG (ed) Protein Phosphorylation: A Practical Approach, pp. 87–107. IRL Press, Oxford (1993).

    Google Scholar 

  25. Igloi GL, Kössel H: The transcriptional apparatus of chloroplasts. Crit Rev Plant Sci 10: 525–558 (1992).

    Google Scholar 

  26. Inoue K, Kouadio JK, Mosley CS, Bauer CE: Isolation and in vitro phosphorylation of sensory transduction components controlling anaerobic induction of light harvesting and reaction center gene expression in Rhodobacter capsulatus. Biochemistry 34: 391–396 (1995).

    Google Scholar 

  27. Kamps MP, Sefton B: Acid and base hydrolysis of phosphoproteins bound to immobilon facilitates analysis of phosphoamino acids in gel-fractionated proteins. Anal Biochem 176: 22–27 (1989).

    Google Scholar 

  28. Klimczak LJ, Collinge MA, Farini D, Giuliano G, Walker JC, Cashmore AR: Reconstitution of Arabidopsis casein kinase II from recombinant subunits and phosphorylation of transcription factor GBF1. Plant Cell 7: 105–115 (1995).

    Google Scholar 

  29. Laemmli UK: Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680–685 (1970).

    Google Scholar 

  30. Lerbs S, Bräutigam E, Mache R: DNA-dependent RNA polymerase of spinach chloroplasts: characterization of sigma-like and alpha-like polypeptides. Mol Gen Genet 211: 459–464 (1988).

    Google Scholar 

  31. Lerbs-Mache S: The 110-kDa polypeptide of spinach plastid DNA-dependent RNA polymerase: Single-subunit enzyme or catalytic core of multimeric enzyme complexes. Proc Natl Acad Sci USA 90: 5509–5513 (1993).

    Google Scholar 

  32. Link G: Plastid differentiation: organelle promoters and transcription factors. In: Nover L (ed), Plant Promoters and Transcription Factors, pp. 65–85. Springer-Verlag, Berlin/ Heidelberg (1994).

    Google Scholar 

  33. Link G: Green life: control of chloroplast gene transcription. BioEssays 18: 465–471 (1996).

    Google Scholar 

  34. Liu B, Troxler RF: Molecular characterization of a positively photoregulated nuclear gene for a chloroplast RNApolymerase σ factor in Cyanidium caldarium. Proc Natl Acad Sci USA 93: 3313–3318 (1996).

    Google Scholar 

  35. Mayfield SP, Yohn CB, Cohen A, Danon A: Regulation of chloroplast gene expression. Annu Rev Plant Physiol Plant Mol Biol 46: 147–166 (1995).

    Google Scholar 

  36. Merril CR, Goldman D, Van Keuren MR: Silver staining methods for polyacrylamide gel electrophoresis. Meth Enzymol 96: 230–239 (1983).

    Google Scholar 

  37. Morden CW, Wolfe KH, DePamphilis CW, Palmer JD: Plastid translation and transcription genes in a non-photosynthetic plant: Intact, missing and pseudo genes. EMBO J 10: 3281–3288 (1991).

    Google Scholar 

  38. Mosley CS, Suzuki JY, Bauer CE: Identification and molecular genetic characterization of a sensor kinase responsible for coordinately regulating light harvesting and reaction center gene expression in response to anaerobiosis. J Bact 176: 7566–7573 (1994).

    Google Scholar 

  39. Mullet JE: Dynamic regulation of chloroplast transcription. Plant Physiol 103: 309–313 (1993).

    Google Scholar 

  40. Pfannschmidt T, Link G: Separation of two classes of plastid DNA-dependent RNA polymerases that are differentially expressed in mustard (Sinapis alba L.) seedlings. Plant Mol Biol 25: 69–81 (1994).

    Google Scholar 

  41. Race HL, Eaton-Rye JJ, Hind G: A 64-kDa protein is a substrate for phosphorylation by a distinct thylakoid protein kinase. Photosynth Res 43: 231–239 (1995).

    Google Scholar 

  42. Race HL, Hind G: A protein kinase in the core of photosystem II. Biochemistry 35: 13 006–13 010 (1996).

    Google Scholar 

  43. Rochaix J-D: Post-transcriptional steps in the expression of chloroplast genes. Annu Rev Cell Biol 8: 1–28 (1992).

    Google Scholar 

  44. Silverstein T, Cheng L, Allen JF: Chloroplast thylakoid protein phosphatase reactions are redox-independent and kinetically heterogeneous. FEBS Lett 334: 101–105 (1993).

    Google Scholar 

  45. Sobczyk A, Schyns G, Tandeau de Marsac N, Houmard J: Transduction of the light signal during complementary chromatic adaptation in the cyanobacterium Calothrix sp. PCC 7601: DNA-binding proteins and modulation by phosphorylation. EMBO J 12: 997–1004 (1993).

    Google Scholar 

  46. Stock JB, Stock AM, Mottonen JM: Signal transduction in bacteria. Nature 344: 395–400 (1990).

    Google Scholar 

  47. Stone JM, Walker JC: Plant protein kinase families and signal transduction. Plant Physiol 108: 451–457 (1995).

    Google Scholar 

  48. Sugiura M: The chloroplast genome. Plant Mol Biol 19: 149–168 (1992).

    Google Scholar 

  49. Sun G, Markwell J: Lack of types 1 and 2A protein serine(P)/threonine(P) phosphatase activities in chloroplasts. Plant Physiol 100: 620–624 (1992).

    Google Scholar 

  50. Tanaka K, Oikawa K, Ohta N, Kuroiwa H, Kuroiwa T, Takahashi H: Nuclear encoding of a chloroplast RNA polymerase sigma subunit in a red alga. Science 272: 1932–1935 (1996).

    Google Scholar 

  51. Tiller K, Eisermann A, Link G: The chloroplast transcription apparatus from mustard (Sinapis alba L.): evidence for three different transcription factors which resemble bacterial ς factors. Eur J Biochem 198: 93–99 (1991).

    Google Scholar 

  52. Tiller K, Link G: Sigma-like transcription factors frommustard (Sinapis alba L.) etioplast are similar in size to, but functionally distinct from, their chloroplast counterparts. PlantMol Biol 21: 503–513 (1993).

    Google Scholar 

  53. Tiller K, Link G: Phosphorylation and dephosphorylation affect functional characteristics of chloroplast and etioplast transcription systems from mustard (Sinapis alba L.). EMBO J 12: 1745–1753 (1993).

    Google Scholar 

  54. Troxler RF, Zhang F, Hu J, Bogorad L: Evidence that s factors are components of chloroplast RNA polymerase. Plant Physiol 104: 753–759 (1994).

    Google Scholar 

  55. Vera A, Sugiura M: Chloroplast rRNAtranscription fromstructurally different tandem promoters: an additional novel-type promoter. Curr Genet 27: 280–284 (1995).

    Google Scholar 

  56. Weil JH: Organization and expression of the chloroplast genome. Plant Sci 49: 149–157 (1987).

    Google Scholar 

  57. Zaitlin D, Hu J, Bogorad L: Binding and transcription of relaxed DNA templates by fractions of maize chloroplast extracts. Proc Natl Acad Sci USA 86: 876–880 (1989).

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Baginsky, S., Tiller, K. & Link, G. Transcription factor phosphorylation by a protein kinase associated with chloroplast RNA polymerase from mustard (Sinapis alba). Plant Mol Biol 34, 181–189 (1997). https://doi.org/10.1023/A:1005802909902

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1023/A:1005802909902

Navigation