Antonie van Leeuwenhoek

, Volume 86, Issue 2, pp 159–165

Streptacidiphilus jiangxiensis sp. nov., a novel actinomycete isolated from acidic rhizosphere soil in China

  • Ying Huang
  • Quingfeng Cui
  • Liming Wang
  • Carlos Rodriguez
  • Erika Quintana
  • Michael Goodfellow
  • Zhiheng Liu
Article

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References

  1. Collins M.D. 1985. Isoprenoid quinone analysis in classification and identification.. In:Goodfellow M. and Minnikin D.E.(eds), Chemical Methods in Bacterial Systematics.Academic Press, London, UK, .pp267–287.Google Scholar
  2. Felsenstein J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17: 368–376.Google Scholar
  3. Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783–791.Google Scholar
  4. Felsenstein J. 1993. PHYLIP (phylogenetic inference package) version 3.5c. Department of Genetics, University of Washington,Seattle, USA.Google Scholar
  5. Fitch W.M. and Margoliash E. 1967. Construction of phylogenetic trees: a method based on mutation distances as estimated from cytochrome c sequences is of general applicability. Science 155: 279–284.Google Scholar
  6. Goodfellow M. and Dawson D. 1978. Qualitative and quantitative studies of bacteria colonizing Picea sitchensis litter. Soil Biol. Biochem. 10: 303–307.Google Scholar
  7. Groth I., Schütze B., Boettcher T., Pullen C.B., Rodriguez C., Leistner E. and Goodfellow M. 2003. Kitasatospora putterlickiae sp nov., isolated from rhizosphere soil, transfer of Streptomyces kifunensis to the genus Kitasatospora as Kitasatospora kifunensis comb. nov., and emended description of Streptomyces aureofaciens Duggar 1948. Int. J. Syst. Evol. Microbiol. 53: 2033–2040.Google Scholar
  8. Hasegawa T., Takizawa M. and Tanida S. 1983. A rapid analysis for chemical grouping of aerobic actinomycetes. J. Gen. Appl. Microbiol. 29: 319–322.Google Scholar
  9. Jones K.L. 1949. Fresh isolates of actinomycetes in which the presence of sporogenous aerial mycelia is a fluctuating characteristic. J. Bacteriol. 57: 141–145.Google Scholar
  10. Kämpfer P. and Kroppenstedt R.M. 1996. Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can. J. Microbiol. 42: 989–1005.Google Scholar
  11. Kawato M. and Shinobu R. 1959. On Streptomyces herbaricolor sp. nov., supplement: a simple technique for microscopical observation. Mem. Osaka Univ. Lib. Arts Educ. B. Nat. Sci.8:114–119.Google Scholar
  12. Khan M.R. and Williams S.T. 1975. Studies on the ecology of actinomycetes in soil. VIII. Distribution and characteristics of acidophilic actinomycetes. Soil Biol. Biochem. 7: 345–348.Google Scholar
  13. Kim S.B., Falconer C., Williams E. and Goodfellow M. 1998.Streptomyces thermocarboxydovorans sp. nov. and Streptomyces thermocarboxydus sp. nov., two moderately thermophilic carboxydotrophic species from soil. Int. J. Syst. Bacteriol. 48: 59–68.Google Scholar
  14. Kim S.B., Lonsdale J., Seong C.-N. and Goodfellow M. 2003.Streptacidiphilus gen. nov., acidophilic actinomycetes with wall chemotype I and emendation of the family Streptomycetaceae (Waksman and Henrici 1943AL) emend. Rainey (1977). Antonie van Leeuwenhoek83:107–116.Google Scholar
  15. Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111–120.Google Scholar
  16. eds_, Chemical Methods in Bacterial Systematics. Academic Press, London, UK, pp. 173–199.Google Scholar
  17. Küster E. 1959. Outline of a comparative study of criteria used in characterisation of the actinomycetes. Int. Bull. Bacteriol. Nomencl. Taxon 9: 97–104.Google Scholar
  18. Lechevalier M.P. and Lechevalier H.A. 1980. The chemotaxonomy of actinomycetes.. In: Dietz A. and Thayer D.W. (eds), Actinomycete Taxonomy, Special Publication 6. Society for Industrial Microbiology, Arlington, Virginia, USA, pp. 277–284.Google Scholar
  19. Lechevalier M.P., De Biévre C. and Lechevalier H.A. 1977. Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem. Syst. Ecol. 5: 249–260.Google Scholar
  20. Marmur J. and Doty P. 1962. Determination of base composition of deoxyribonucleic acid from its denaturation temperature. J. Mol. Biol. 5: 109–118.Google Scholar
  21. Mehta A., Leite Jr. R.P. and Rosato Y.B. 2001. Assessment of the genetic diversity of Xylella fastidiosa isolated from citrus in Brazil by PCR-RFLP of the 16S rDNA and 16S-23S intergenic spacer and rep-PCR fingerprinting. Antonie van Leeuwenhoek 79: 53–59.Google Scholar
  22. Minnikin D.E., O'Donnell A.G., Goodfellow M., Alderson G., Athalye M., Schaal A. and Parlett J.H. 1984. An integrated procedure for the extraction of isoprenoid quinones and polar lipids.J. Microbiol. Methods 2: 233–241.Google Scholar
  23. Saitou N. and Nei M. 1987. The neighbor joining method: a new method for constructing phylogenetic trees. Mol. Biol. Evol. 4: 406–425.Google Scholar
  24. Sasser M. 1990. Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids.Technical Note 101. Newark, Delaware, USA.Google Scholar
  25. Seong C.N., Goodfellow M., Ward A.C. and Hah Y.C. 1993. Numerical classification of acidophilic actinomycetes isolated from acid soil in Korea. Kor. J. Microbiol.31: 355–363.Google Scholar
  26. Shirling E.B. and Gottlieb D. 1966. Methods for characterization of Streptomyces species. Int. J. Syst. Bacteriol. 16: 313–340.Google Scholar
  27. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F. and Higgins D.G. 1997. The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25: 4876–4882.Google Scholar
  28. Waksman S.A. and Henrici A.T. 1943. The nomenclature and classification of the actinomycetes. J. Bacteriol. 46: 337–341.Google Scholar
  29. Wang L., Huang Y., Cui Q., Xie Q., Zhang Y. and Liu Z. 2003.Isolation of acidophilic and acidoduric streptomycetes using a dispersion and differential centrifugation approach. Microbiol. (English translation of Mikrobiologiya) 30: 104–106.Google Scholar
  30. Williams S.T. and Flowers T.H.1978. The influence of pH on starch hydrolysis by neutrophilic and acidophilic actinomycetes.Microbios20:99–106.Google Scholar
  31. Williams S.T. and Khan M.R. 1974. Antibiotics-a soil microbiologist's viewpoint. Post. Hig. I. Med. Dosw.28: 395–408.Google Scholar
  32. Williams S.T. and Robinson C.S. 1981. The role of streptomycetes in decomposition of chitin in acidic soils. J. Gen. Microbiol.127:55–63.Google Scholar
  33. Williams S.T., Davies F.L., Mayfield C.I. and Khan M.R. 1971.Studies on the ecology of actinomycetes in soil. II. The pH requirements of streptomycetes from two acid soils. Soil Biol. Biochem.3:187–195.Google Scholar
  34. Williams S.T., Goodfellow M., Alderson G., Wellington E.M.H., Sneath P.H.A. and Sackin M.J. 1983. Numerical classification of Streptomyces and related genera. J. Gen. Microbiol.129:1743–1813.Google Scholar
  35. Wu C., Lu X., Qin M., Wang Y. and Ruan J.1989. Analysis of menaquinone compound in microbial cells by HPLC. Microbiology(English translation of Mikrobiologiya)16:176–178.Google Scholar

Copyright information

© Kluwer Academic Publishers 2004

Authors and Affiliations

  • Ying Huang
    • 1
  • Quingfeng Cui
    • 1
  • Liming Wang
    • 1
  • Carlos Rodriguez
    • 2
  • Erika Quintana
    • 2
  • Michael Goodfellow
    • 2
  • Zhiheng Liu
    • 1
  1. 1.State Key Laboratory of Microbial ResourcesInstitute of Microbiology, Chinese Academy of SciencesBeijingChina
  2. 2.School of BiologyUniversity of NewcastleUK

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