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Landscape genetics of mountain lions (Puma concolor) in southern Brazil

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Abstract

It is suggested that mountain lions have suffered a bottleneck and lost their genetic diversity in an area in southern Brazil. In this study, we correlated landscape connectivity and patterns of gene flow to identify landscape permeability and possible sources of migrants for the population of mountain lions in southern Brazil, using circuit theory. Population structure was analyzed with Bayesian methods, and density and parentage relationships were also estimated, to evaluate the population genetic profile. We did not find genetic structure between samples, and landscape analysis indicated that all individuals were connected by areas that are permeable to mountain lion movements. The estimated population density was low, 0.09 and 0.32 mountain lions/100 km 2 (Ne / N = 0.11 and Ne / N = 0.4, respectively). Parentage results indicated that individuals killed in the same spot were not related, suggesting that mountain lions are still able to disperse through the landscape. Evidence indicates that severe habitat loss and consequent illegal hunting were responsible for a bottleneck and consequent loss of genetic variability, we demonstrated that the landscape still allows mountain lions to move, and that protected areas in southern Brazil may be acting as a source of migrants. This information indicates that conservation actions to reduce illegal hunting and to monitor protected areas are important to understand the impact of hunted areas on source areas.

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References

  • Anderson, A. 1983. A critical review of literature on puma (Felis concolor). Colorado Division of Wildlife. Wildlife Research Section. Special Report Number 54, 91.

  • Anderson, C.R., Lindzey, F.G., McDonald, D.B., 2004. Genetic structure of cougar populations across the Wyoming Basin: metapopulation or megapopulation. J. Mammal. 85, 1207–1214.

    Article  Google Scholar 

  • Balkenhol, N., Gugerli, F., Cushman, S.A., Waits, L.P., Coulon, A., Arntzen, J.W., Holderegger, Wagner, H.H., 2009. Identifying future research needs in landscape genetics: here to from here? Landsc. Ecol. 24, 455–463.

    Article  Google Scholar 

  • Beier, P., 1993. Determining minimum habitat areas and habitat corridors for cougars. Cons. Biol. 7, 94–108.

    Article  Google Scholar 

  • Beier, P., 1995. Dispersal of juvenile cougars in fragmented habitat. J. Wildl. Manag. 59, 228–237.

    Article  Google Scholar 

  • Beier, P., Choate, D., Barret, R.H., 1995. Movement patterns of mountain lions during different behaviors. J. Mammal. 76, 1056–1070.

    Article  Google Scholar 

  • Beier, P., Majka, D.R., Spencer, W.D., 2008. Forks in the road: choices in procedures for designing wildland linkages. Cons. Biol. 22, 836–851.

    Article  Google Scholar 

  • Castilho, C.S., Marins-Sá, L.G., Benedet, R.C., Freitas T.R.O., 2010. submitted for publication. Habitat loss and evidence of a bottleneck in mountain lions in southern Brazil.

  • Culver, M., Johnson, W.E., Pecon-Slattery, J., O’Brien, S.J., 2000. Genomic ancestry of the American puma (Puma concolor). J. Hered. 91, 186–197.

    Article  CAS  PubMed  Google Scholar 

  • Culver, M., Hedrick, P.W., Murphy, K., O’Brien, S., Hornocker, M.G., 2008. Estimation of the bottleneck size in Florida panthers. Anim. Cons. 11, 104–110.

    Article  Google Scholar 

  • DeSalle, R., Amato, G., 2004. The expansion of conservation genetics. Nat. Rev. Genet. 5, 702–712.

    Article  Google Scholar 

  • Doyle, J.J., Doyle, J.L., 1987. A rapid isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 9, 11–15.

    Google Scholar 

  • Eizirik, E., Indrusiak, C.B., Jonson, W.E., 2002. Análisis de la viabilidad de las poblaciones de Jaguar: evaluación de parámetros y estudios de caso en tres poblaciones remanentes del sur de Sudamérica. In: Medellín, R.A., Equihua, C., Chetkiewicz, Ch.L., Crawshaw, P.G., Rabinowitz, A., Redford, K.H. ET-AL (Eds.), El Jaguar en el Nuevo Milenio. Editorial Ediciones Científicas Universitarias, México, DF, Mexico, pp. 501–518.

    Google Scholar 

  • Ernest, H.B., Boyce, W.M., Bleich, V.C., May, B.P., Stiver, S.J., Torres, S.G., 2003. Genetic structure of mountain lion (Puma concolor) populations in California. Cons. Gen. 4, 353–366.

    Article  CAS  Google Scholar 

  • Frankham, R., 1995. Effective Population Size/Adult Population Size Ratios in Wildlife: A Review, vol. 66. Genetic Research Cambridge, pp. 95–107.

    Article  Google Scholar 

  • Frankham, R., Balloux, J.D., Briscoe, D., 2005. Introduction to Conservation Genetics. Cambridge University Press, 617 pp.

  • Goodnight, K.F., Queller, D.C., Poznansky, T., 1998. KINSHIP 1.2. Goodnight Software. Rice University, Houston, TX.

    Google Scholar 

  • Haag, T., 2009. Genética da conservação e ecologia molecular de onças-pintadas (Panthera onca, Felidae). PhD Thesis. UFRGS, Brazil. 150 pp.

    Google Scholar 

  • IUCN, 2008. IUCN Red List of Threatened Species. www.iucnredlist.org, downloaded in April 2009.

  • Kelly, M.J., et al., 2008. Estimating puma densities from camera trapping across three study sites: Bolivia, Argentina, Belize. J. Mammal. 89, 408–418.

    Article  Google Scholar 

  • Kumar, S., Tamura, K., Nei, M., 2004. Mega3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5, 2.

    Article  Google Scholar 

  • Kurushima, J.D., Collins, J.A., Well, J.A., Ernest, H.B., 2006. Development of 21 microsatellite loci for puma (Puma concolor) ecology and forensics. Mol. Ecol. Notes 6, 1260–1262.

    Article  CAS  Google Scholar 

  • LaRue, M.A., Nielsen, C.K., 2008. Modelling potential dispersal corridors for cougars in Midwestern North America using least-cost path methods. Ecol. Model. 212, 372–381.

    Article  Google Scholar 

  • Lindzey, F.G., Van Sicle, W.D., Ackerman, B.B., Barnhust, D., Hemker, T.P., Laing, S.P., 1994. Cougar population dynamics in southern Utah. J. Wildl. Manag. 58, 619–624.

    Article  Google Scholar 

  • Logan, K.A., Irwin, L.L., Skinner, R.L., 1986. Characteristics of a hunted mountain lion population in Wyoming. J. Wildl. Manag. 50, 648–654.

    Article  Google Scholar 

  • Logan, K.A., Sweanor, L.L., 2001. Desert Puma: Evolutionary Ecology and Conservation of an Enduring Carnivore. Island Press, Washington, DC.

    Google Scholar 

  • Luo, S.J., Johnson, W.E., David, V.A., Menotti-Raymond, M., Stanyon, R., Cai, Q.X., Beck, T., Yuhki, N., Pecon-Slattery, J., Smith, J.L.D., O’Brien, S.J., 2007. Development of Y chromosome intraspecific polymorphic markers in the Felidae. J. Hered. 98, 400–413.

    Article  CAS  PubMed  Google Scholar 

  • Lyra-Jorge, M.C., Ciocheti, G., Pivello, V.R., 2008. Carnivore mammals in a fragmented landscape in northeast of São Paulo State, Brazil. Biodivers. Cons. 17, 1573–1580.

    Article  Google Scholar 

  • Mace, O.M., Lande, R., 1991. Assessing extinction threats: towards a reevaluation of IUCN threatened species categories. Cons. Biol. 5, 148–157.

    Article  Google Scholar 

  • Manel, S., Schwartz, M.K., Luikart, G., Taberlet, P., 2003. Landscape genetics: combining landscape ecology and population genetics. TREE 18, 189–197.

    Google Scholar 

  • Marins-Sá, L.G., 2005. Análise de predação de Puma concolor em rebanhos domésticos na região do Parque Nacional de São Joaquim e entorno, SC, Brasil. M.Sc. Thesis. Curso de Pós-Graduação em Ecologia UFRGS: Porto Alegre 52 pp.

    Google Scholar 

  • Marshall, T.C., Slate, J., Kruuk, L.E.B., Pemberton, J.M., 1998. Statistical confidence for linkelihood-based paternity inference in natural populations. Mol. Ecol. 7, 639–655.

    Article  CAS  PubMed  Google Scholar 

  • Mazzolli, M., 1993. Ocorrência de Puma concolor (Linnaeus) (Felidae, Carnívora) em áreas de vegetação remanescente de Santa Catarina, Brasil. Rev. Bras. Zool. 10, 581–587.

    Article  Google Scholar 

  • Mazzolli, M. 2006. Persistência e riqueza de mamíferos focais em sistemas agropecuários no planalto meridiano brasileiro. Ph.D. Thesis. UFRGS, Brazil 105 pp.

    Google Scholar 

  • Mazzolli, M., Graipel, M.E., Dunstone, N., 2002. Mountain lion depredation in southern Brazil. Biol. Cons. 105, 43–51.

    Article  Google Scholar 

  • McRae, B.H., 2006. Isolation by resistance. Evolution 60, 1551–1561.

    Article  PubMed  Google Scholar 

  • McRae, B.H., Beier, P., 2007. Circuit theory predicts gene flow in plant and animal populations. Proc. Natl. Acad. Sci. U.S.A. 104, 19885–19890.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • McRae, B.H., Beier, P., Dewald, L.E., Huynh, Y., Keim, P., 2005. Habitat barriers limit gene flow and illuminate historical events in a wide-ranging carnivore, the American puma. Mol. Ecol. 14, 1965–1977.

    Article  CAS  PubMed  Google Scholar 

  • McRae, B.H., Dickson, B.G., Keitt, T.H., Shah, V.B., 2008. Using circuit theory to model connectivity in ecology, evolution, and conservation. Ecology 89, 2712–2724.

    Article  PubMed  Google Scholar 

  • McRae, B.H., Shah, V.B., 2009. Circuitscape User Guide. ONLINE. The University of California, Santa Barbara, Available at: http://www.circuitscape.org.

    Google Scholar 

  • Menotti-Raymond, M., David, V.A., Lyons, L.A., Schaffer, A.A., Tomlin, J.F., Hutton, M.K., O’Brien, S.J., 1999. A genetic linkage map of microsatellites in the domestic cat (Felis catus). Genomics 57, 9–23.

    Article  CAS  PubMed  Google Scholar 

  • Miller, M.P., 2005. Alleles in Space: computer software for the join analysis of interindividual spatial and genetic information. J. Hered. 96, 722–724.

    Article  CAS  PubMed  Google Scholar 

  • Miotto, R.A., Rodrigues, F.P., Ciocheti, G., Galetti, P.M., 2007. Determination of the minimum population size of pumas (Puma concolor) through fecal DNA analysis in two protected Cerrado areas in the Brazilian Southeast. Biotropica 39, 647–654.

    Article  Google Scholar 

  • MMA & Fundação Biodiversitas 2008. Livro vermelho da fauna brasileira ameaçada de extinção. Ed. Machado, A.B.M., Drummond, G.M., Paglia, A.P. Brasília, DF, Belo Horizonte.

  • Moreno, V.R., Grisolia, A.B., Campagnari, F., Milazzotto, M., Adania, C.H., Garcia, J.F., Souza, E.B., 2006. Genetic variability of Herpailurus yagouaroundi, Puma concolor and Panthera onca (Mammalia, Felidae) studied using Felis catus microsatellites. Genet. Mol. Biol. 29, 290–293.

    Article  CAS  Google Scholar 

  • Nowell, K., Jackson, P., 1996. Wild Cats: Status, Survey and Conservation Action Plan. IUCN, Gland, Switzerland.

    Google Scholar 

  • Nunney, L., 1993. The influence of mating system and overlapping generations on effective population size. Evolution 47, 1329–1341.

    Article  PubMed  Google Scholar 

  • Nunney, L., Campbell, K.A., 1993. Assessing minimum viable population size: demography meets population genetics. TREE 8, 234–239.

    CAS  PubMed  Google Scholar 

  • Paviolo, A., Di Blanco, Y.E., De Angelo, C.D., Di Bitetti, 2009. Protection affects the abundance and activity patterns of pumas in the Atlantic Forest. J. Mammal. 90, 926–934.

    Article  Google Scholar 

  • Pierce, B.M., Bleich, V.C., Jenkins, R.T., 2000. Social organization of mountain lions: does a land tenure system regulate population size? Ecology 81, 1533–1543.

    Article  Google Scholar 

  • Pritchard, J.K., Stephens, M., Donelly, P., 2000. Inference of population structure using multilocus genotype data. Genetics 155, 945–959.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Riley, S.J., Malecki, R.A., 2001. A landscape analysis of cougar distribution and abundance in Montana, USA. Environ. Manag. 28, 317–323.

    Article  CAS  Google Scholar 

  • Robinson, H.S., Wielgus, R.B., Cooley, H.S., Cooley, S.W., 2008. Sink populations in carnivore management: cougar demography and immigration in a hunted population. Ecol. Appl. 18, 1028–1037.

    Article  PubMed  Google Scholar 

  • Rodzen, J.A., Banks, J.D., Meredith, E.P., Jones, K.C., 2007. Characterization of 37 microsatellite loci in mountain lions (Puma concolor) for use in forensic and population applications. Cons. Gen. 8, 1239–1241.

    Article  Google Scholar 

  • Ross, P.I., Jalkotzy, M.G., 1992. Characteristics of a hunted population of cougars in southwestern Alberta. J. Wildl. Manag. 56, 417–426.

    Article  Google Scholar 

  • Ruiz-Garcia, M., Pacheco, L.F., Alvarez, D., 2009. Caracterización genética del puma andino boliviano (Puma concolor) en el Parque Nacional Sajama (PNS) y relaciones con otras poblaciones de puma del noroccidente de Sudamérica. Rev. Chil. Hist. Nat. 82, 97–117.

    Article  Google Scholar 

  • Ruth, T., Logan, K.A., Sweanor, L., Hornocker, M.G., Temple, L.J., 1998. Evaluating cougar translocation in New Mexico. J. Wildl. Manag. 62, 1264–1275.

    Article  Google Scholar 

  • Sambrook, J.E., Fritsch, F., Maniatis, T., 1989. Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbor Press, New York, NY.

    Google Scholar 

  • Shaw, H.G., Beier, P., Culver, M., Grigiore, M., 2007. Puma Field Guide. The Cougar Network.

  • Silveira, L., 2004. Ecologia comparada e conservação da onça-pintada (Panthera onca) e onça-parda (Puma concolor), no Cerrado e Pantanal. Ph.D. Thesis, Universidade de Brasília, Brasília, Brazil.

    Google Scholar 

  • Stoner, D.C., Rieth, W.R., Wolfe, M.L., Mecham, M.B., Neville, A., 2008. Long-distance dispersal of a female cougar in basin and range landscape. J. Wildl. Manag. 72, 933–939.

    Article  Google Scholar 

  • Storfer, A., Murphy, M.A., Evans, J.S., Goldberg, C.S., Robinson, S., Spear, S.F., Dezzani, R., Delmelle, E., Vierlin, L., Waits, L.P., 2007. Putting the ‘landscape’ in landscape genetics. Heredity 98, 128–142.

    Article  CAS  PubMed  Google Scholar 

  • Sweanor, L.L., Logan, K.A., Hornocker, M.G., 2000. Cougar dispersal patterns, metapopulation dynamics and conservation. Cons. Biol. 14, 798–808.

    Article  Google Scholar 

  • Thompson, D.J., Jenks, J.A., 2005. Long-distance dispersal by a subadult male cougar from the Black Hills, South Dakota. J. Wildl. Manag. 69, 818–820.

    Article  Google Scholar 

  • Trolle, M., Noss, A.J., Lima, E.S., Dalponte, J.C., 2007. Camera-trap studies of maned wolf density in the Cerrado and the Pantanal of Brazil. Biodivers. Cons. 16, 1197–1204.

    Article  Google Scholar 

  • Van Oosterhout, C., Hutchinson, W.F., Wills, D.P.M., Shipley, P., 2004. MICROCHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4, 535–538.

    Article  CAS  Google Scholar 

  • Walker, C.W., Harveson, L.A., Pittman, M.T., Tewes, M.E., Honeycutt, R.L., 2000. Microsatellite variation in two populations of mountain lions (Puma concolor) in Texas. Southw. Nat. 45, 196–203.

    Article  Google Scholar 

  • Waples, R.S., 2006. A bias correction for estimates of effective population size based on linkage disequilibrium at unlinked gene loci. Cons. Gen. 7, 167–184.

    Article  Google Scholar 

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Castilho, C.S., Marins-Sá, L.G., Benedet, R.C. et al. Landscape genetics of mountain lions (Puma concolor) in southern Brazil. Mamm Biol 76, 476–483 (2011). https://doi.org/10.1016/j.mambio.2010.08.002

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