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Biotechnology and genetic engineering in the new drug development. Part III. Biocatalysis, metabolic engineering and molecular modelling

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Abstract

Industrial biotechnology has been defined as the use and application of biotechnology for the sustainable processing and production of chemicals, materials and fuels. It makes use of biocatalysts such as microbial communities, whole-cell microorganisms or purified enzymes. In the review these processes are described.

Drug design is an iterative process which begins when a chemist identifies a compound that displays an interesting biological profile and ends when both the activity profile and the chemical synthesis of the new chemical entity are optimized. Traditional approaches to drug discovery rely on a stepwise synthesis and screening program for large numbers of compounds to optimize activity profiles. Over the past ten to twenty years, scientists have used computer models of new chemical entities to help define activity profiles, geometries and relativities. This article introduces inter alia the concepts of molecular modelling and contains references for further reading.

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References

  1. Adlercreutz P, Straathof AJJ: Applied Biocatalysis. Taylor & Francis, London, 2005, 24–30.

    Google Scholar 

  2. Alder BJ: Studies in molecular dynamics: I general method. J Chem Phys, 1959, 31, 459–466.

    Article  CAS  Google Scholar 

  3. Alves R, Antunes F, Salvador A: Tools for kinetic modelling of biochemical networks. Nature Biotechnol, 2006, 24, 667–672.

    Article  CAS  Google Scholar 

  4. Aravind L, Mazumder R, Vasudevan S, Koonin EV: Trends in protein evolution inferred from sequence and structure analysis. Curr Opin Struct Biol, 2002, 12, 392–399.

    Article  CAS  Google Scholar 

  5. Aristidou AA, Nielsen J, Stephanopoulos GN: Metabolic Engineering: Principles And Methodologies. Academic Press, San Diego, 1998.

    Google Scholar 

  6. Bloom JD, Meyer MM, Meinhold P: Evolving strategies for enzyme engeenering. Curr Opin Struct Biol, 2005, 15, 447–452.

    Article  CAS  Google Scholar 

  7. Brakhage AA (Ed.): Molecular Biotechnology of Fungal β-Lactam Antibiotics and Related Peptide Synthetases. Springer, Berlin, Heidelberg, New York, 2004, 1–264.

    Google Scholar 

  8. Chunyin Z, Cook S: A Concise synthesis of (+)-artemisinin. J Am Chem Soc, 2012, 134, 13577–13579.

    Article  Google Scholar 

  9. Dordick JS, Hauer B, Kiener A, Schmid A, Witholt B, Wubbolts M: Industrial biocatalysis today and tomorrow. Nature, 2001, 409, 258–266.

    Article  Google Scholar 

  10. Elander RP: Industrial production of β-lactam antibiotics. Appl Microbiol Biotechnol, 2003, 61, 385–392.

    Article  CAS  Google Scholar 

  11. Gelin BR, Karplus M: Mechanism of tertiary structural change in haemoglobin. Proc Natl Acad Sci USA, 1997, 74, 801–805.

    Article  Google Scholar 

  12. Gitai Z: The new bacterial cell biology: moving parts and subcellular architecture. Cell, 2005, 120, 577–586.

    Article  CAS  Google Scholar 

  13. Kar A, Sambamurthy K: Pharmaceutical Biotechnology. New Age International (P) Ltd., Publishers, New Delhi, 2006.

    Google Scholar 

  14. Kim TY, Kim HU, Lee SY, Park JH, Park JM: Metabolic engineering of microorganisms: general strategies and drug production. Drug Discov Today, 2009, 14, 78–88.

    Article  Google Scholar 

  15. Kollman PA, Massova I, Reyes C, Kuhn B, Huo S, Chong L, Lee M et al.: Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models. Acc Chem Res, 2000, 33, 889–897.

    Article  CAS  Google Scholar 

  16. Levitt M, Warshel A: Computer simulations of protein folding. Nature, 1975, 253, 694–698.

    Article  CAS  Google Scholar 

  17. Mechtler K, Wagner E: Gene transfer mediated by influenza virus peptides: The role of peptide sequence. New J Chem, 1997, 21, 105–111.

    CAS  Google Scholar 

  18. Munshi CB, Fryxell KB, Lee HC, Branton WD: Largescale production of human CD38 in yeast by fermentation. Methods Enzymol, 1997, 280, 318–330.

    Article  CAS  Google Scholar 

  19. Otten LG, Quax WJ: Directed evolution: selecting today’s biocatalysts. Biomol Eng, 2005, 22, 1–9.

    Article  CAS  Google Scholar 

  20. Paulsen MD, Ornstein RL: Substrate mobility in the thiocamphor-bound cytochrome P450: An explanation of the conflict between the observed product profile and the X-ray structure. Protein Eng, 1993, 6, 359–365.

    Article  CAS  Google Scholar 

  21. Pollard DJ, Woodley JM: Biocatalysis for pharmaceutical intermediates: the future is now. Trends Biotechnol, 2006, 25, 66–73.

    Article  Google Scholar 

  22. Rauch A, Nolan D, Martin A: Prospective genetic screening decreases the incidence of abacavir hypersensitivity reaction in the Western Australian HIV cohort study. Clin Infect Dis, 2006, 43, 99–102.

    Article  CAS  Google Scholar 

  23. Reetz MT, Carballeira JD: Iterative saturation mutagenesis (ISM) for rapid directed evolution of functional enzymes. Nature Prot, 2007, 2, 891–903.

    Article  CAS  Google Scholar 

  24. Schmid A, Dordick JS, Hauer B, Kiener A, Wubbolts M, Witholt B: Industrial biocatalysis today and tomorrow. Nature, 2001, 409, 258–268.

    Article  CAS  Google Scholar 

  25. Walsh G: Biopharmaceutical benchmarks. Nat Biotechnol, 2000, 18, 831–833.

    Article  CAS  Google Scholar 

  26. Zawilska JB, Wojcieszak J, Olejniczak AB: Prodrugs: A challenge for the drug development. Pharmacol Rep, 2013, 65, 1–14.

    Article  CAS  Google Scholar 

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Correspondence to Tadeusz Librowski or Stanisław Lochyński.

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Stryjewska, A., Kiepura, K., Librowski, T. et al. Biotechnology and genetic engineering in the new drug development. Part III. Biocatalysis, metabolic engineering and molecular modelling. Pharmacol. Rep 65, 1102–1111 (2013). https://doi.org/10.1016/S1734-1140(13)71468-3

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