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Matrix-assisted laser desorption ionization hydrogen/deuterium exchange studies to probe peptide conformational changes

  • Focus: H/D Exchange Of Proteins In Solution
  • Published:
Journal of the American Society for Mass Spectrometry

Abstract

Hydrogen/deuterium (H/D) exchange chemistry monitored by matrix-assisted laser desorption ionization time-of-flight (MALDI-TOF) mass spectrometry is used to study solution phase conformational changes of bradykinin, α-melanocyte stimulating hormone, and melittin as water is added to methanol-d 4, acetonitrile, and isopropanol-d 8 solutions. The results are interpreted in terms of a preference for the peptides to acquire more compact conformations in organic solvents as compared to the random conformations. Our interpretation is supported by circular dichroism spectra of the peptides in the same solvent systems and by previously published structural data for the peptides. These results demonstrate the utility of MALDI-TOF as a method to monitor the H/D exchange chemistry of peptides and investigations of solution-phase conformations of biomolecules.

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References

  1. Englander, S. W.; Mayne, L. Annu. Rev. Biophys. Biomol. Struct. 1992, 21, 243–265.

    Article  CAS  Google Scholar 

  2. Miranker, A.; Robinson, C. V.; Radford, S. E.; Aplin, R. T.; Dobson, C. M. Science 1993, 262, 896–900.

    Article  CAS  Google Scholar 

  3. Bai, Y.; Sosnick, T. R.; Mayne, L.; Englander, S. W. Science 1995, 269, 192–197.

    Article  CAS  Google Scholar 

  4. Englander, S. W.; Sosnick, T. R.; Englander, J. J.; Mayne, L. Curr. Opin. Struct. Biol. 1996, 6, 18–23.

    Article  CAS  Google Scholar 

  5. Miranker, A.; Robinson, C. V.; Radford, S. E.; Dobson, C. M. FASEB J 1996, 10, 93–101.

    CAS  Google Scholar 

  6. Clarke, J.; Itzhaki, L. S. Curr. Opin. Struct. Biol. 1998, 8, 112–118.

    Article  CAS  Google Scholar 

  7. Raschke, T.; Marqusee, S. Curr. Opin. Biotech. 1998, 9, 80–86.

    Article  CAS  Google Scholar 

  8. Roder, H.; Wuthrich, K. Proteins: Struc., Func., Genet. 1986, 1, 34–42.

    Article  CAS  Google Scholar 

  9. Udgaonkar, J. B.; Baldwin, R. L. Nature 1988, 335, 694–699.

    Article  CAS  Google Scholar 

  10. Roder, H.; Elove, G. A.; Englander, S. W. Nature 1988, 335, 700–704.

    Article  CAS  Google Scholar 

  11. Miranker, A.; Radford, S. E.; Karplus, M.; Dobson, C. M. Nature 1991, 349, 633–636.

    Article  CAS  Google Scholar 

  12. Mullins, L. S.; Pace, C. N.; Raushel, F. M. Protein Sci 1997, 6, 1387–1395.

    Article  CAS  Google Scholar 

  13. Thevenon-Emeric, G.; Kozlowski, J.; Zhang, Z.; Smith, D. L. Anal. Chem. 1992, 64, 2456–2458.

    Article  CAS  Google Scholar 

  14. Katta, V.; Chait, B. T. J. Am. Chem. Soc. 1993, 115, 6317–6321.

    Article  CAS  Google Scholar 

  15. Wagner, D. S.; Anderegg, R. J. Anal. Chem. 1994, 66, 706–711.

    Article  CAS  Google Scholar 

  16. Robinson, C. V.; Gross, M.; Eyles, S. J.; Ewbank, J. J.; Mayhew, M.; Hartl, F. U.; Dobson, C. M.; Radford, S. E. Nature 1994, 372, 646–651.

    Article  CAS  Google Scholar 

  17. Smith, D. L.; Deng, Y.; Zhang, Z. J. Mass Spectrom. 1997, 32, 135–146.

    Article  CAS  Google Scholar 

  18. Dobson, C. M.; Evans, P. A.; Radford, S. E. Trends Biol. Sci. 1994, 19, 31–37.

    Article  CAS  Google Scholar 

  19. Chung, E. W.; Nettleton, E. J.; Morgan, C. J.; Gross, M.; Miranker, A.; Radford, S. E.; Dobson, C. M.; Robinson, C. V. Protein Sci 1997, 6, 1316–1324.

    Article  CAS  Google Scholar 

  20. Deng, Y.; Smith, D. L. Biochemistry 1998, 37, 6256–6262.

    Article  CAS  Google Scholar 

  21. Deng, Y.; Zhang, Z.; Smith, D. L. J. Am. Soc. Mass Spectrom. 1999, 10, 675–684.

    Article  CAS  Google Scholar 

  22. Mandell, J. G.; Falick, A. M.; Komives, E. A. Anal. Chem. 1998, 70, 3897–3995.

    Article  Google Scholar 

  23. Figueroa, I. D.; Torres, O.; Russell, D. H. Anal. Chem. 1998, 70, 4527–4533.

    Article  CAS  Google Scholar 

  24. Figueroa, I. D.; Torres, O.; Russell, D. H. Proceedings of the 46th ASMS Conference on Mass Spectrometry and Allied Topics, Orlando, FL, 1998; p 608.

  25. Desai, U. R.; Klibanov, A. M. J. Am. Chem. Soc. 1995, 117, 3940–3945.

    Article  CAS  Google Scholar 

  26. Wescott, C. R.; Klibanov, A. M. Biochim. Biophys. Acta 1994, 1206, 1–9.

    Article  CAS  Google Scholar 

  27. Barbacci, D. C.; Edmondson, R. D.; Russell, D. H. Int. J. Mass Spectrom. Ion Processes 1997, 165/166, 221–235.

    Article  CAS  Google Scholar 

  28. Rohl, C. A.; Scholtz, J. M.; York, E.; Stewart, J. M.; Baldwin, R. L. Biochemistry 1992, 31, 1263–1269.

    Article  CAS  Google Scholar 

  29. Nelson, J. W.; Kallenbach, N. R. Proteins: Struc., Func., Genet. 1986, 1, 211–217.

    Article  CAS  Google Scholar 

  30. Kallenbach, N. R.; Lyu, P.; Zhou H. In Circular Dichroism and the Conformational Analysis of Biomolecules; Fasman, G. D., Ed.; Plenum: New York, 1996, pp 247–249.

    Google Scholar 

  31. Fasman, G. D. In Poly-α-amino Acids; Fasman, G. D., Ed.; Dekker: New York, 1967, Vol 1, pp 499–604.

    Google Scholar 

  32. Urnes, P.; Doty, P. Adv. Protein Chem. 1961, 16, 401–544.

    Article  CAS  Google Scholar 

  33. Kauzmann, W. Adv. Protein Chem. 1959, 14, 1–63.

    Article  CAS  Google Scholar 

  34. Ishii, Y. Eur. J. Biochem. 1994, 221, 705–712.

    Article  CAS  Google Scholar 

  35. Englander, J. J.; Rogero, J. R.; Englander, W. Anal. Biochem. 1985, 147, 234–244.

    Article  CAS  Google Scholar 

  36. Denys, L.; Bothner-By, A. A.; Fisher, G. H.; Ryan, J. W. Biochemistry 1982, 21, 6531–6536.

    Article  CAS  Google Scholar 

  37. Cann, J. R.; Stewart, J. M.; London, R. E.; Matwiyoff, N. Biochemistry 1976, 15, 498–504.

    Article  CAS  Google Scholar 

  38. Cann, J. R.; Stewart, J. M.; Matsueda, G. R. Biochemistry 1973, 12, 3780–3788.

    Article  CAS  Google Scholar 

  39. Hashimoto, C.; Nozaki, S.; Muramatsu, I. Bull. Chem. Soc. Jpn. 1991, 64, 3571–3574.

    Article  CAS  Google Scholar 

  40. Cann, J. R.; Liu, X.; Stewart, J. M.; Gera, L.; Kotovych, G. Biopolymers 1994, 34, 869–878.

    Article  CAS  Google Scholar 

  41. Young, J. K.; Hicks, R. P. Biopolymers 1994, 34, 611–623.

    Article  CAS  Google Scholar 

  42. Marlborough, D. I.; Ryan, J. W. Arch. Biochem. Biophys. 1976, 176, 582–590.

    Article  CAS  Google Scholar 

  43. Katta, V.; Chait, B. T. Rapid Commun. Mass Spectrom. 1991, 5, 214–217.

    Article  CAS  Google Scholar 

  44. The Merck Index, 12th ed.; Budavari, S., Ed.; Whitehouse Station: Merck Research Laboratories, 1996; pp 10780.

  45. Ikeda, K.; Urano, W.; Hamaguchi, K.; Kubo, K.; Yajima, H. Chem. Pharm. Bull. 1971, 19, 1815–1819.

    CAS  Google Scholar 

  46. Wu, C. C.; Ikeda, K.; Yang, J. T. Biochemistry 1981, 20, 566–570.

    Article  CAS  Google Scholar 

  47. Dempsey, C. E. Biochim. Biophys. Acta 1990, 1031, 143–161.

    CAS  Google Scholar 

  48. Talbot, J. C.; Duforurcq, J.; de Bony, J.; Faucon, J. F.; Lussan, C. FEBS Lett 1979, 102, 191–193.

    Article  CAS  Google Scholar 

  49. Brown, L. R.; Lauterwein, J.; Wuthrich, K. Biochim. Biophys. Acta 1980, 622, 231–244.

    CAS  Google Scholar 

  50. Podo, F.; Strom, R.; Crifo, C.; Zualuf, M. Int. J. Peptide Protein Res. 1982, 19, 514–527.

    Article  CAS  Google Scholar 

  51. Terwillinger, T. C.; Eisenberg, D. J. Biol. Chem. 1982, 257, 6010–6015.

    Google Scholar 

  52. Terwillinger, T. C.; Eisenberg, D. J. Biol. Chem. 1982, 257, 6016–6022.

    Google Scholar 

  53. Bello, J.; Bello, H. R.; Granados, E. Biochemistry 1982, 21, 461–465.

    Article  CAS  Google Scholar 

  54. Quay, S. C.; Condie, C. C. Biochemistry 1983, 22, 695–700.

    Article  CAS  Google Scholar 

  55. Haguihara, Y.; Kataoka, M.; Aimoto, S.; Goto, Y. Biochemistry 1992, 31, 11908–11914.

    Article  Google Scholar 

  56. Goto, Y.; Haguihara, Y. Biochemistry 1992, 31, 732–738.

    Article  CAS  Google Scholar 

  57. Bazzo, R.; Tappin, M. J.; Pastore, A.; Harvey, T. S.; Carver, J. A.; Campbell, I. D. Eur. J. Biochem. 1988, 173, 139–146.

    Article  CAS  Google Scholar 

  58. Dempsey, C. E. Biochemistry 1988, 27, 6893–6901.

    Article  CAS  Google Scholar 

  59. CRC Handbook of Chemistry and Physics, 76 ed.; Lide, D. R., Ed.; CRC: Boca Raton, 1995–1996; pp 6-159–6-164.

    Google Scholar 

  60. Woody, R. W. In Circular Dichroism and the Conformational Analysis of Biomolecules; Fasman, G. D., Ed.; Plenum: New York, 1996, pp 49–53.

    Google Scholar 

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Figueroa, I.D., Russell, D.H. Matrix-assisted laser desorption ionization hydrogen/deuterium exchange studies to probe peptide conformational changes. J Am Soc Mass Spectrom 10, 719–731 (1999). https://doi.org/10.1016/S1044-0305(99)00040-9

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  • DOI: https://doi.org/10.1016/S1044-0305(99)00040-9

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