Abstract
Hydrogen/deuterium (H/D) exchange chemistry monitored by matrix-assisted laser desorption ionization time-of-flight (MALDI-TOF) mass spectrometry is used to study solution phase conformational changes of bradykinin, α-melanocyte stimulating hormone, and melittin as water is added to methanol-d 4, acetonitrile, and isopropanol-d 8 solutions. The results are interpreted in terms of a preference for the peptides to acquire more compact conformations in organic solvents as compared to the random conformations. Our interpretation is supported by circular dichroism spectra of the peptides in the same solvent systems and by previously published structural data for the peptides. These results demonstrate the utility of MALDI-TOF as a method to monitor the H/D exchange chemistry of peptides and investigations of solution-phase conformations of biomolecules.
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Englander, S. W.; Mayne, L. Annu. Rev. Biophys. Biomol. Struct. 1992, 21, 243–265.
Miranker, A.; Robinson, C. V.; Radford, S. E.; Aplin, R. T.; Dobson, C. M. Science 1993, 262, 896–900.
Bai, Y.; Sosnick, T. R.; Mayne, L.; Englander, S. W. Science 1995, 269, 192–197.
Englander, S. W.; Sosnick, T. R.; Englander, J. J.; Mayne, L. Curr. Opin. Struct. Biol. 1996, 6, 18–23.
Miranker, A.; Robinson, C. V.; Radford, S. E.; Dobson, C. M. FASEB J 1996, 10, 93–101.
Clarke, J.; Itzhaki, L. S. Curr. Opin. Struct. Biol. 1998, 8, 112–118.
Raschke, T.; Marqusee, S. Curr. Opin. Biotech. 1998, 9, 80–86.
Roder, H.; Wuthrich, K. Proteins: Struc., Func., Genet. 1986, 1, 34–42.
Udgaonkar, J. B.; Baldwin, R. L. Nature 1988, 335, 694–699.
Roder, H.; Elove, G. A.; Englander, S. W. Nature 1988, 335, 700–704.
Miranker, A.; Radford, S. E.; Karplus, M.; Dobson, C. M. Nature 1991, 349, 633–636.
Mullins, L. S.; Pace, C. N.; Raushel, F. M. Protein Sci 1997, 6, 1387–1395.
Thevenon-Emeric, G.; Kozlowski, J.; Zhang, Z.; Smith, D. L. Anal. Chem. 1992, 64, 2456–2458.
Katta, V.; Chait, B. T. J. Am. Chem. Soc. 1993, 115, 6317–6321.
Wagner, D. S.; Anderegg, R. J. Anal. Chem. 1994, 66, 706–711.
Robinson, C. V.; Gross, M.; Eyles, S. J.; Ewbank, J. J.; Mayhew, M.; Hartl, F. U.; Dobson, C. M.; Radford, S. E. Nature 1994, 372, 646–651.
Smith, D. L.; Deng, Y.; Zhang, Z. J. Mass Spectrom. 1997, 32, 135–146.
Dobson, C. M.; Evans, P. A.; Radford, S. E. Trends Biol. Sci. 1994, 19, 31–37.
Chung, E. W.; Nettleton, E. J.; Morgan, C. J.; Gross, M.; Miranker, A.; Radford, S. E.; Dobson, C. M.; Robinson, C. V. Protein Sci 1997, 6, 1316–1324.
Deng, Y.; Smith, D. L. Biochemistry 1998, 37, 6256–6262.
Deng, Y.; Zhang, Z.; Smith, D. L. J. Am. Soc. Mass Spectrom. 1999, 10, 675–684.
Mandell, J. G.; Falick, A. M.; Komives, E. A. Anal. Chem. 1998, 70, 3897–3995.
Figueroa, I. D.; Torres, O.; Russell, D. H. Anal. Chem. 1998, 70, 4527–4533.
Figueroa, I. D.; Torres, O.; Russell, D. H. Proceedings of the 46th ASMS Conference on Mass Spectrometry and Allied Topics, Orlando, FL, 1998; p 608.
Desai, U. R.; Klibanov, A. M. J. Am. Chem. Soc. 1995, 117, 3940–3945.
Wescott, C. R.; Klibanov, A. M. Biochim. Biophys. Acta 1994, 1206, 1–9.
Barbacci, D. C.; Edmondson, R. D.; Russell, D. H. Int. J. Mass Spectrom. Ion Processes 1997, 165/166, 221–235.
Rohl, C. A.; Scholtz, J. M.; York, E.; Stewart, J. M.; Baldwin, R. L. Biochemistry 1992, 31, 1263–1269.
Nelson, J. W.; Kallenbach, N. R. Proteins: Struc., Func., Genet. 1986, 1, 211–217.
Kallenbach, N. R.; Lyu, P.; Zhou H. In Circular Dichroism and the Conformational Analysis of Biomolecules; Fasman, G. D., Ed.; Plenum: New York, 1996, pp 247–249.
Fasman, G. D. In Poly-α-amino Acids; Fasman, G. D., Ed.; Dekker: New York, 1967, Vol 1, pp 499–604.
Urnes, P.; Doty, P. Adv. Protein Chem. 1961, 16, 401–544.
Kauzmann, W. Adv. Protein Chem. 1959, 14, 1–63.
Ishii, Y. Eur. J. Biochem. 1994, 221, 705–712.
Englander, J. J.; Rogero, J. R.; Englander, W. Anal. Biochem. 1985, 147, 234–244.
Denys, L.; Bothner-By, A. A.; Fisher, G. H.; Ryan, J. W. Biochemistry 1982, 21, 6531–6536.
Cann, J. R.; Stewart, J. M.; London, R. E.; Matwiyoff, N. Biochemistry 1976, 15, 498–504.
Cann, J. R.; Stewart, J. M.; Matsueda, G. R. Biochemistry 1973, 12, 3780–3788.
Hashimoto, C.; Nozaki, S.; Muramatsu, I. Bull. Chem. Soc. Jpn. 1991, 64, 3571–3574.
Cann, J. R.; Liu, X.; Stewart, J. M.; Gera, L.; Kotovych, G. Biopolymers 1994, 34, 869–878.
Young, J. K.; Hicks, R. P. Biopolymers 1994, 34, 611–623.
Marlborough, D. I.; Ryan, J. W. Arch. Biochem. Biophys. 1976, 176, 582–590.
Katta, V.; Chait, B. T. Rapid Commun. Mass Spectrom. 1991, 5, 214–217.
The Merck Index, 12th ed.; Budavari, S., Ed.; Whitehouse Station: Merck Research Laboratories, 1996; pp 10780.
Ikeda, K.; Urano, W.; Hamaguchi, K.; Kubo, K.; Yajima, H. Chem. Pharm. Bull. 1971, 19, 1815–1819.
Wu, C. C.; Ikeda, K.; Yang, J. T. Biochemistry 1981, 20, 566–570.
Dempsey, C. E. Biochim. Biophys. Acta 1990, 1031, 143–161.
Talbot, J. C.; Duforurcq, J.; de Bony, J.; Faucon, J. F.; Lussan, C. FEBS Lett 1979, 102, 191–193.
Brown, L. R.; Lauterwein, J.; Wuthrich, K. Biochim. Biophys. Acta 1980, 622, 231–244.
Podo, F.; Strom, R.; Crifo, C.; Zualuf, M. Int. J. Peptide Protein Res. 1982, 19, 514–527.
Terwillinger, T. C.; Eisenberg, D. J. Biol. Chem. 1982, 257, 6010–6015.
Terwillinger, T. C.; Eisenberg, D. J. Biol. Chem. 1982, 257, 6016–6022.
Bello, J.; Bello, H. R.; Granados, E. Biochemistry 1982, 21, 461–465.
Quay, S. C.; Condie, C. C. Biochemistry 1983, 22, 695–700.
Haguihara, Y.; Kataoka, M.; Aimoto, S.; Goto, Y. Biochemistry 1992, 31, 11908–11914.
Goto, Y.; Haguihara, Y. Biochemistry 1992, 31, 732–738.
Bazzo, R.; Tappin, M. J.; Pastore, A.; Harvey, T. S.; Carver, J. A.; Campbell, I. D. Eur. J. Biochem. 1988, 173, 139–146.
Dempsey, C. E. Biochemistry 1988, 27, 6893–6901.
CRC Handbook of Chemistry and Physics, 76 ed.; Lide, D. R., Ed.; CRC: Boca Raton, 1995–1996; pp 6-159–6-164.
Woody, R. W. In Circular Dichroism and the Conformational Analysis of Biomolecules; Fasman, G. D., Ed.; Plenum: New York, 1996, pp 49–53.
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Figueroa, I.D., Russell, D.H. Matrix-assisted laser desorption ionization hydrogen/deuterium exchange studies to probe peptide conformational changes. J Am Soc Mass Spectrom 10, 719–731 (1999). https://doi.org/10.1016/S1044-0305(99)00040-9
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DOI: https://doi.org/10.1016/S1044-0305(99)00040-9