Abstract
Troponin C (TnC), a calcium-binding protein of the thin filament of muscle, plays a regulatory role in skeletal and cardiac muscle contraction. NMR reveals a small conformational change in the cardiac regulatory N-terminal domain of TnC (cNTnC) on binding of Ca2+ such that the total exposed hydrophobic surface area increases very slightly from 3090±86 Å2 for apo-cNTnC to 3108±71 Å2 for Ca2+-cNTnC. Here, we show that measurement of solvent accessibility for backbone amide protons by means of solution-phase hydrogen/deuterium (H/D) exchange followed by pepsin digestion, high-performance liquid chromatography, and electrospray ionization high-field (9.4 T) Fourier transform Ion cyclotron resonance mass spectrometry is sufficiently sensitive to detect such small ligand binding-induced conformational changes of that protein. The extent of deuterium incorporation increases significantly on binding of Ca2+ for each of four proteolytic segments derived from pepsin digestion of the apo- and Ca2+-saturated forms of cNTnC. The present results demonstrate that H/D exchange monitored by mass spectrometry can be sufficiently sensitive to detect and identify even very small conformational changes in proteins, and should therefore be especially informative for proteins too large (or too insoluble or otherwise intractable) for NMR analysis.
Similar content being viewed by others
References
Englander, J. J.; Roger, J. R.; Englander, S. W. Measurement and calibration of peptide group hydrogen-deuterium exchange by ultraviolet spectrophotometry. Anal. Biochem. 1979, 92, 517–524.
Woodward, C.; Simon, I.; Tuchsen, E. Hydrogen exchange and the dynamic structure of proteins. Mol. Cell. Biochem. 1982, 48, 135–160.
Englander, S. W.; Kallenbach, N. R. Hydrogen exchange and structural dynamics of proteins and nucleic acids. Quart. Rev. Biophys. 1984, 16, 521–655.
Gregory, R. B.; Rosenberg, A. Protein conformational dynamics measured by hydrogen isotopic exchange techniques In Methods in Enzymology; Hirs, C. H. W., and Timasheff, S. N., Eds.; Academic: Orlando, 1986; Vol 131, pp 448–508.
Englander, S. W.; Mayne, L. Protein folding studied using hydrogen-exchange labeling and two-dimensional NMR. Annu. Rev. Biophys. Biomol. Struct. 1992, 21, 243–265.
Katta, V.; Chait, B. T. Hydrogen/deuterium exchange electrospray ionization mass spectrometry: a method for probing protein conformational changes in solution. J. Am. Chem. Soc. 1993, 115, 6317–6321.
Miranker, A.; Robinson, C. V.; Radford, S. E.; Aplin, R. T.; Dobson, C. M. Detection of Transient Protein Folding Populations by Mass Spectrometry. Science 1993, 262, 896–900.
Wagner, D. S.; Anderegg, R. J. Conformation of cytochrome c studied by deuterium exchange-electrospray ionization mass spectrometry. Anal. Chem. 1994, 66, 706–711.
Wang, F.; Blanchard, J. S.; Tang, X.-J. Amide hydrogen exchange/electrospray ionization mass spectrometry studies of substrate and inhibitor binding and conformational changes of E. coli dihydrodipicolinate reductase. Biochemistry 1997, 36, 3755–3759.
Chung, E. W.; Nettleton, E. J.; Morgan, C. J.; Grob, M.; Miranker, A.; Radford, S. E.; Dobson, C. M.; Robinson, C. V. Hydrogen exchange properties of proteins in native and denatured states monitored by mass spectrometry and NMR. Prot. Sci. 1997, 6, 1316–1324.
Robison, C. V.; Gross, M.; Eyles, S. J.; Ewbank, J. J.; Mayhew, M.; U, H. F.; Dobson, C. M.; Radford, S. E. Conformation of GroEL-bound α-lactalbumin probed by mass spectrometry. Nature 1994, 372, 646–651.
Zhang, Z.; Smith, D. L. Determination of amide hydrogen exchange by mass spectrometry: A new tool for protein structure elucidation. Prot. Sci. 1993, 2, 522–531.
Smith, D. L.; Zhang, Z. Probing noncovalent structural features of proteins by mass spectrometry. Mass Spectrom. Rev. 1994, 13, 411–429.
Zhang, Z.; Post, C. B.; Smith, D. L. Amide hydrogen exchange determined by mass spectrometry: application to rabbit muscle aldolase. Biochemistry 1996, 35, 779–791.
Johnson, R. S. Mass spectrometric measurement of changes in protein hydrogen exchange rates that result from point mutations. J. Am. Soc. Mass Spectrom. 1996, 7, 515–521.
Remigy, H.; Jaquinod, M.; Y, P.; Gagnon, J.; Cheng, H.; Xia, B.; Markley, J. H.; Hurley, J. K.; Tollin, G.; Forest, E. Probing the influence of mutations on the stability of a ferredoxin by mass spectrometry. J. Prot. Chem. 1997, 16, 527–532.
Resing, K. A.; Ahn, N. G. Deuterium exchange mass spectrometry as a probe of protein kinase activation. Analysis of wild type and constitutively active mutants of MAP kinase Kinase-1. Biochemistry 1998, 37, 463–475.
Wang, F.; Li, W.; Emmett, M. R.; Hendrickson, C. L.; Marshall, A. G.; Zhang, Y.-L.; Wu, L.; Zhang, Z.-Y. Conformational and dynamic changes of Yersinia protein tyrosine phosphatase induced by ligand binding and active site mutation and revealed by H/D exchange and electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry. Biochemistry 1998, 37, 15289–15299.
Johnson, R. S.; Walsh, K. A. Mass spectrometric measurement of protein amide hydrogen exchange rates of apo- and holo-myoglobin. Prot. Sci. 1994, 3, 2411–2418.
Zhang, Z.; Li, W.; Li, M.; Logan, T. M.; Guan, S.; Marshall, A. G. Higher-order structure and dynamics of FK506-binding protein probed by backbone amide hydrogen/deuterium exchange and electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry. Tech. Prot. Chem. 1997, VIII, 703–713.
Zhang, Z.; Li, W.; Logan, T. M.; Li, M.; Marshall, A. G. Human recombinant [C22A] FK506-binding protein amide hydrogen exchange rates from mass spectrometry match and extend those from NMR. Prot. Sci. 1997, 6, 2203–2217.
Wang, F.; Scapin, G.; Blanchard, J. S.; Angeletti, R. H. Substrate binding and conformational changes of Clostridium glutamicum diaminopimelate dehydrogenase revealed by H/D exchange and electrospray mass spectrometry. Prot. Sci. 1998, 7, 293–299.
McLafferty, F. W. High-resolution tandem FT mass spectrometry above 10 kDa. Acc. Chem. Res. 1994, 27, 379–386.
Wu, Q.; Van Orden, S.; Cheng, X.; Bakhtiar, R.; Smith, R. D. Characterization of cytochrome c variants with high-resolution FTICR mass spectrometry: Correlation of fragmentation and structure. Anal. Chem. 1995, 67, 2498–2509.
Senko, M. W.; Hendrickson, C. L.; Pasa-Tolic, L.; Marto, J. A.; White, F. M.; Guan, S.; Marshall, A. G. Electrospray ionization FT-ICR mass spectrometry at 9. 4 Tesla. Rapid Commun. Mass Spectrom. 1996, 10, 1824–1828.
Kelleher, N. L.; Senko, M. W.; Siegel, M. M.; McLafferty, F. W. Unit resolution mass spectra of 112 kDa molecules with 3 Da accuracy. J. Am. Soc. Mass Spectrom. 1997, 8, 380–383.
Buchanan, M. V.; Hettich, R. L. Characterization of large biomolecules by Fourier transform mass spectrometry. Anal. Chem. 1993, 65, 245A-259A.
Amster, I. J. A tutorial on Fourier transform mass spectrometry. J. Mass Spectrom. 1996, 31, 1325–1337.
Dienes, T.; Pastor, S. J.; Schürch, S.; Scott, J. R.; Yao, J.; Cui, S.; Wilkins, C. L. Fourier transform mass spectrometry—Advancing years (1992-Mid 1996). Mass Spectrom. Rev. 1996, 15, 163–211.
Laude, D. A.; Stevenson, E.; Robinson, J. M. Electrospray ionization/Fourier transform ion cyclotron resonance mass spectrometry In Electrospray Ionization Mass Spectrometry; Cole, R. B., Ed.; Wiley: New York, 1997, pp 291–319.
Green, M. K.; Lebrilla, C. B. Ion-molecule reactions as probes of gas phase structures of peptides and proteins. Mass Spectrom. Rev. 1997, 16, 53–71.
Marshall, A. G.; Hendrickson, C. L.; Jackson, G. S. Fourier transform ion cyclotron resonance mass spectrometry: A primer. Mass Spectrom. Rev. 1998, 17, 1–35.
Marshall, A. G.; Senko, M. W.; Li, M.; Dillon, S.; Guan, S.; Logan, T. M. Protein molecular weight to 1 Da by 13C, 15N double-depletion and FT-ICR mass spectrometry. J. Am. Chem. Soc. 1997, 119, 433–434.
Farah, C. S.; Reinach, F. C. The troponin complex and regulation of muscle contraction. FASEB J 1995, 9, 755–767.
Herzberg, O.; James, M. N. Refined crystal structure of troponin C from turkey skeletal muscle at 2.0 A resolution. J. Molec. Biol. 1988, 203, 761–779.
Potter, J. D.; Gergely, J. The calcium and magnesium binding sites on troponin and their role in the regulation of myofibrillar adenosine triphosphatase. J. Biol. Chem. 1975, 250, 4628–4633.
Putkey, J. A.; Sweeney, H. L.; Campbell, S. T. Site-directed mutation of the trigger calcium-binding sites in cardiac troponin C. J. Biol. Chem. 1989, 264, 12370–12378.
Putkey, J. A.; Liu, W.; Sweeney, H. L. Function of the N-terminal calcium-binding sites in cardiac/slow troponin C assessed in fast skeletal muscle fibers. J. Biol. Chem. 1991, 266, 14881–14884.
Szczesna, D.; Guzman, G.; Miller, T.; Zhao, J.; Farokhi, K.; Ellemberger, H.; Potter, J. D. The role of the four Ca2+ binding sites of troponin C in the regulation of skeletal muscle contraction. J. Biol. Chem. 1996, 271, 8381–8386.
Negele, J. C.; Dotson, D. G.; Liu, W.; Sweeney, H. L.; Putkey, J. A. Mutation of the high affinity calcium binding sites in cardiac troponin C. J. Biol. Chem. 1992, 267, 825–831.
Li, M. X.; Gagne, S. M.; Spyracopoulos, L.; Kloks, C. P.; Audette, G.; Chandra, M.; Solaro, R. J.; Smillie, L. B.; Sykes, B. D. NMR studies of Ca2+ binding to the regulatory domains of cardiac and E41A skeletal muscle troponin C reveal the importance of site I to energetics of the induced structural changes. Biochemistry 1997, 36, 12519–12525.
Li, M. X.; Chandra, M.; Pearlstone, J. R.; Racher, K. I.; Trigo-Gonzalez, G.; Borgford, T.; Kay, C. M.; Smillie, L. B. Properties of isolated recombinant N and C domains of chicken troponin C. Biochemistry 1994, 33, 917–1925.
Li, M. X.; Gagne, S. M.; Tsuda, S.; Kay, C. M.; Smillie, L. B.; Sykes, B. D. Calcium binding to the regulatory N-domain of skeletal muscle troponin C occurs in a stepwise manner. Biochemistry 1995, 34, 8330–8340.
Gagne, S. M.; Tsuda, S.; Li, M. X.; Smillie, B. D.; Sykes, B. D. Structures of the troponin C regulatory domains in the apo and calcium-saturated states. Nat. Struct. Biol. 1995, 2, 784.
Spyracopoulos, L.; Li, M. X.; Sia, S. K.; Gagne, S. M.; Chandra, M.; Solaro, R. J.; Sykes, B. D. Calcium-induced structural transition in the regulatory domain of human cardiac troponin C. Biochemistry 1997, 36, 12138–12146.
Sia, S. K.; Li, M. X.; Spyracopoulos, L.; Gagne, S. M.; Liu, W.; Putkey, J. A.; Sykes, B. D. Structure of cardiac muscle troponin C unexpectedly reveals a closed regulatory domain. J. Biol. Chem. 1997, 272, 18216–18221.
Senko, M. W.; Hendrickson, C. L.; Emmett, M. R.; Shi, S. D.-H.; Marshall, A. G. External accumulation of ions for enhanced electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry. J. Am. Soc. Mass Spectrom. 1997, 8, 970–976.
Dharmasiri, K.; Smith, D. L. Regional stability changes in oxidized and reduced cytochrome c located by hydrogen exchange and mass spectrometry. J. Am. Soc. Mass Spectrom. 1997, 8, 1039–1045.
Fredricksen, R. S.; Swenson, C. A. Relationship between stability and function for isolated domains of troponin C. Biochemistry 1996, 35, 14012–14026.
Slupsky, C. M.; Sykes, B. D. NMR solution structure of calcium-saturated skeletal muscle troponin C. Biochemistry 1995, 34, 15953–15964.
Foguel, D.; Suarez, M. C.; Barbosa, C.; Rodrigues, J. J. Jr.; Sorenson, M. M.; Smillie, L. B.; Silva, J. L. Mimicry of the calcium-induced conformational state of troponin C by low temperature under pressure. Proc. Natl. Acad. Sci. USA 1996, 93, 10642–10666.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Wang, F., Li, W., Emmett, M.R. et al. Fourier transform ion cyclotron resonance mass spectrometric detection of small Ca2+-induced conformational changes in the regulatory domain of human cardiac troponin C. J Am Soc Mass Spectrom 10, 703–710 (1999). https://doi.org/10.1016/S1044-0305(99)00039-2
Received:
Revised:
Accepted:
Issue Date:
DOI: https://doi.org/10.1016/S1044-0305(99)00039-2