Skip to main content
Log in

A rapid and convenient enzyme digestion method for the analysis of N-glycans using exoglycosidase-impregnated polyacrylamide gels fabricated in an automatic pipette tip

  • Special Issue: Original Paper
  • Frontiers of Separation Analysis
  • Published:
Analytical Sciences Aims and scope Submit manuscript

Abstract

Efficient enzymatic digestion methods are critical for the characterization and identification of glycans. Glycan hydrolysis enzymes are widely utilized for the identification of glycoprotein or glycolipid glycans. The commonly utilized in solution glycan hydrolysis methods require several hours of incubation with enzymes for complete removal of their target monosaccharides. To develop an efficient and simple method for the rapid release of monosaccharides from glycoprotein glycans, we fabricated exoglycosidase-impregnated acrylamide gels in an automatic pipette tip. Our automated enzymatic reactors are based on the simple photochemical copolymerization of monomers comprising acrylamide and methylene-bis-acrylamide-containing enzymes with an azobis compound functioning as the photocatalytic initiator. After filling the tip of the automatic pipette with these acrylamide solutions, polymerization of the acrylamide gel solution was performed by irradiation with a LED. The immobilized enzymes maintained their activities in the pipette tips and their action was completed by fully automatic pipetting for 10 to 30 min. We utilized 8-aminopyrene-1, 3, 6-trisulfonic acid (APTS)-labeled glycans as a substrate and measured by capillary electrophoresis (CE) before and after enzymatic digestion. We demonstrated that this method exhibited quantitative enzymatic and specific cleavage of monosaccharides from glycoprotein glycans.

Graphical abstract

This is a preview of subscription content, log in via an institution to check access.

Access this article

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

Data availability

The datasets generated and analyzed during the current study are available upon reasonable request from the corresponding author.

References

  1. C. Reily, T.J. Stewart, M.B. Renfrow, J. Novak, Nat. Rev. Nephrol. 15, 346 (2019). https://doi.org/10.1038/s41581-019-0129-4

    Article  PubMed  PubMed Central  Google Scholar 

  2. S. Yamamoto, M. Kinoshita, S. Suzuki, J. Pharm. Biomed. Anal. 130, 273 (2016). https://doi.org/10.1016/j.jpba.2016.07.015

    Article  CAS  PubMed  Google Scholar 

  3. R. Jefferis, Nat. Rev. Drug Discov. 8, 226 (2009). https://doi.org/10.1038/nrd2804

    Article  CAS  PubMed  Google Scholar 

  4. L. Byrd-Leotis, N. Jia, S. Dutta, J.F. Trost, C. Gao, S.F. Cummings, T. Braulke, S. Müller-Loennies, J. Heimburg-Molinaro, D.A. Steinhauer, R.D. Cummings, Sci. Adv. 5, 2554 (2019). https://doi.org/10.1126/sciadv.aav2554

    Article  CAS  Google Scholar 

  5. M. Kinoshita, K. Yamada, J. Pharm. Biomed. Anal. 207, 114424 (2022). https://doi.org/10.1016/j.jpba.2021.114424

    Article  CAS  PubMed  Google Scholar 

  6. S. Jorge, K. Pereira, H. López-Fernández, W. LaFramboise, R. Dhir, J. Fernández-Lodeiro, C. Lodeiro, H.M. Santos, J.L. Capelo-Martínez, Talanta 206, 120180 (2020). https://doi.org/10.1016/j.talanta.2019.120180

    Article  CAS  PubMed  Google Scholar 

  7. Z. Guo, J. Cheng, H. Sun, W. Sun, Rapid Commun. Mass Spectrom. 31, 1353 (2017). https://doi.org/10.1002/rcm.7913

    Article  CAS  PubMed  Google Scholar 

  8. H. Kim, H.S. Kim, D. Lee, D. Shin, D. Shin, J. Kim, J. Kim, Anal. Chem. 89, 10655 (2017). https://doi.org/10.1021/acs.analchem.7b02169

    Article  CAS  PubMed  Google Scholar 

  9. M. Safdar, J. Sproß, J. Jänis, J. Chromatogr. A 1324, 1 (2014). https://doi.org/10.1016/j.chroma.2013.11.045

    Article  CAS  PubMed  Google Scholar 

  10. M.R. Robinson, L.A. Vasicek, C. Hoppmann, M. Li, G. Jokhadze, D.S. Spellman, Analyst 145, 3148 (2020). https://doi.org/10.1039/D0AN00190B

    Article  CAS  PubMed  Google Scholar 

  11. Y.-J. Tan, W.-H. Wang, Y. Zheng, J. Dong, G. Stefano, F. Brandizzi, R.M. Garavito, G.E. Reid, M.L. Bruening, Anal. Chem. 84, 8357 (2012). https://doi.org/10.1021/ac3019153

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. L. Sun, G. Zhu, X. Yan, S. Mou, N.J. Dovichi, J. Chromatogr. A 1337, 40 (2014). https://doi.org/10.1016/j.chroma.2014.02.014

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  13. D. Turoňová, L. Kujovská Krčmová, F. Švec, Trends Anal. Chem. 143, 116404 (2021). https://doi.org/10.1016/j.trac.2021.116404

    Article  CAS  Google Scholar 

  14. R. Farsang, N. Kovács, M. Szigeti, H. Jankovics, F. Vonderviszt, A. Guttman, Anal. Chim. Acta 1215, 339906 (2022). https://doi.org/10.1016/j.aca.2022.339906

    Article  CAS  PubMed  Google Scholar 

  15. H.W. Hahn, M. Rainer, T. Ringer, C.W. Huck, G.K. Bonn, J. Proteome Res. 8, 4225 (2009). https://doi.org/10.1021/pr900188x

    Article  CAS  PubMed  Google Scholar 

  16. J. Chen, P. Shah, H. Zhang, Anal. Chem. 85, 10670 (2013). https://doi.org/10.1021/ac401812b

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  17. M. Alexovič, P.L. Urban, H. Tabani, J. Sabo, Clin. Chim. Acta 507, 104 (2020). https://doi.org/10.1016/j.cca.2020.04.015

    Article  CAS  PubMed  Google Scholar 

  18. S. Yamamoto, M. Ueda, M. Kasai, Y. Ueda, M. Kinoshita, S. Suzuki, J. Pharm. Biomed. Anal. 179, 112995 (2020). https://doi.org/10.1016/j.jpba.2019.112995

    Article  CAS  PubMed  Google Scholar 

  19. M. Kinoshita, Y. Nakatani, K. Yamada, S. Yamamoto, S. Suzuki, J. Pharm. Biomed. Anal. 195, 113875 (2021). https://doi.org/10.1016/j.jpba.2020.113875

    Article  CAS  PubMed  Google Scholar 

  20. Y. Yagi, S. Yamamoto, K. Kakehi, T. Hayakawa, Y. Ohyama, S. Suzuki, Electrophoresis 32, 2979 (2011). https://doi.org/10.1002/elps.201100126

    Article  CAS  PubMed  Google Scholar 

  21. S. Yamamoto, M. Kinoshita, T. Ikegami, S. Suzuki, J. Chromatogr. A 1566, 44 (2018). https://doi.org/10.1016/j.chroma.2018.06.050

    Article  CAS  PubMed  Google Scholar 

  22. R. Reid Townsend, M.R. Hardy, D.A. Cumming, J.P. Carver, B. Bendiak, Anal. Biochem. 182, 1 (1989). https://doi.org/10.1016/0003-2697(89)90708-2

    Article  Google Scholar 

  23. M. Yamagami, Y. Matsui, T. Hayakawa, S. Yamamoto, M. Kinoshita, S. Suzuki, J. Chromatogr. A 1496, 157 (2017). https://doi.org/10.1016/j.chroma.2017.03.019

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgements

This work was supported in part by the Grants-in-Aid for Scientific Research (20K06993 and 21K06505) from the Japan Society for the Promotion of Science (JSPS).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Sachio Yamamoto.

Ethics declarations

Conflict of interest

The authors declare that they have no conflict of interest.

Supplementary Information

Below is the link to the electronic supplementary material.

Supplementary file1 (DOCX 152 KB)

Rights and permissions

Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Yamamoto, S., Kato, N., Wada, M. et al. A rapid and convenient enzyme digestion method for the analysis of N-glycans using exoglycosidase-impregnated polyacrylamide gels fabricated in an automatic pipette tip. ANAL. SCI. 39, 1041–1046 (2023). https://doi.org/10.1007/s44211-023-00314-8

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s44211-023-00314-8

Keywords

Navigation