Abstract
The reversible lipid modification, S-palmitoylation, plays regulatory roles in various physiological processes, e.g., neuronal plasticity and organs development; however, the roles of palmitoylation engaged in testis have yet remained unexplored. Here, we used combined approaches of palm-proteomics, informatics and quantitative PCR to systematically analyze the expression of key enzymes related to protein palmitoylation and identify proteome-wide palmitoylated proteins during the processes of spermatogenesis. Specifically, different timepoints were chosen to collect samples to cover the initiation of meiosis (postnatal, P12), the appearance of the first batch of sperm (P36) and fully fertile status (P60) in mouse. Interestingly, our results showed that only a few enzymes related to protein palmitoylation are highly expressed at later stages (from P36 to P60), rather than in the earlier phase of testis development (P12). To focus on the molecular event of spermatogenesis, we examined the palm-proteomics of testes in P36 and P60 mouse. In total, we identified 4,883 palmitoylated proteins, among which 3,310 proteins match the published palmitoyl-proteome datasets and 1,573 proteins were firstly identified as palmitoylated proteins in this study. Informatics analysis suggested that palmitoylation is involved in events of protein transport, metabolic process, protein folding and cell adhesion, etc. Importantly, further analysis revealed that several networks of palmitoylated proteins are closely associated with sperm morphology and motility. Together, our study laid a solid ground for understanding the roles of protein palmitoylation in spermatogenesis for future studies.
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References
Chen JJ, Fan Y, Boehning D. Regulation of Dynamic Protein S-Acylation. Front Mol Biosci. 2021;8:656440.
Tabaczar S, et al. Protein palmitoylation: Palmitoyltransferases and their specificity. Exp Biol Med (Maywood). 2017;242(11):1150–7.
Won SJ, Cheung See Kit M, Martin BR. Protein depalmitoylases. Crit Rev Biochem Mol Biol. 2018;53(1):83–98.
Chamberlain LH, Shipston MJ. The physiology of protein S-acylation. Physiol Rev. 2015;95(2):341–76.
Jin J, et al. Protein palmitoylation and its pathophysiological relevance. J Cell Physiol. 2021;236(5):3220–33.
Zhang Y, et al. Function of Protein S-Palmitoylation in Immunity and Immune-Related Diseases. Front Immunol. 2021;12:661202.
Ji B, Skup M. Roles of palmitoylation in structural long-term synaptic plasticity. Mol Brain. 2021;14(1):8.
Yi L, Zheng C. The emerging roles of ZDHHCs-mediated protein palmitoylation in the antiviral innate immune responses. Crit Rev Microbiol. 2021;47(1):34–43.
Jansen, M. and B. Beaumelle, How palmitoylation affects trafficking and signaling of membrane receptors. Biol Cell, 2021.
Essandoh K, et al. Palmitoylation: A Fatty Regulator of Myocardial Electrophysiology. Front Physiol. 2020;11:108.
Naumenko VS, Ponimaskin E. Palmitoylation as a Functional Regulator of Neurotransmitter Receptors. Neural Plast. 2018;2018:5701348.
Ko, P.J. and S.J. Dixon, Protein palmitoylation and cancer. EMBO Rep, 2018. 19(10).
De I, Sadhukhan S. Emerging Roles of DHHC-mediated Protein S-palmitoylation in Physiological and Pathophysiological Context. Eur J Cell Biol. 2018;97(5):319–38.
Liu Y, et al. Palmitoyl-protein thioesterase 1 (PPT1): an obesity-induced rat testicular marker of reduced fertility. Mol Reprod Dev. 2014;81(1):55–65.
Zhao W, et al. Functional importance of palmitoyl protein thioesterase 1 (PPT1) expression by Sertoli cells in mediating cholesterol metabolism and maintenance of sperm quality. Mol Reprod Dev. 2019;86(8):984–98.
Wang, S., et al., ZDHHC19 Is Dispensable for Spermatogenesis, but Is Essential for Sperm Functions in Mice. Int J Mol Sci, 2021. 22(16).
Mäkelä JA, et al. Testis Development. Endocr Rev. 2019;40(4):857–905.
Wan J, et al. Palmitoylated proteins: purification and identification. Nat Protoc. 2007;2(7):1573–84.
Wisniewski JR, et al. Universal sample preparation method for proteome analysis. Nat Methods. 2009;6(5):359–62.
Dimayacyac-Esleta BR, et al. Rapid High-pH Reverse Phase StageTip for Sensitive Small-Scale Membrane Proteomic Profiling. Anal Chem. 2015;87(24):12016–23.
da Huang W, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc. 2009;4(1):44–57.
Szklarczyk D, et al. STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets. Nucleic Acids Res. 2019;47(D1):D607-d613.
Montoto LG, et al. Postnatal testicular development in mouse species with different levels of sperm competition. Reproduction. 2012;143(3):333–46.
Blanc M, David FPA, van der Goot FG. SwissPalm 2: Protein S-Palmitoylation Database. Methods Mol Biol. 2019;2009:203–14.
Blanc M, et al. SwissPalm: Protein Palmitoylation database. F1000Res. 2015;4:261.
Veit M, et al. The alpha-subunits of G-proteins G12 and G13 are palmitoylated, but not amidically myristoylated. FEBS Lett. 1994;339(1–2):160–4.
Morrow IC, et al. Flotillin-1/reggie-2 traffics to surface raft domains via a novel golgi-independent pathway. Identification of a novel membrane targeting domain and a role for palmitoylation. J Biol Chem. 2002;277(50):48834–41.
Rivera-Milla E, Stuermer CA, Málaga-Trillo E. Ancient origin of reggie (flotillin), reggie-like, and other lipid-raft proteins: convergent evolution of the SPFH domain. Cell Mol Life Sci. 2006;63(3):343–57.
Jang D, et al. Essential role of flotillin-1 palmitoylation in the intracellular localization and signaling function of IGF-1 receptor. J Cell Sci. 2015;128(11):2179–90.
Xia Z, et al. GNA13 regulates BCL2 expression and the sensitivity of GCB-DLBCL cells to BCL2 inhibitors in a palmitoylation-dependent manner. Cell Death Dis. 2021;12(1):54.
Thinon E, et al. Selective Enrichment and Direct Analysis of Protein S-Palmitoylation Sites. J Proteome Res. 2018;17(5):1907–22.
Sobocińska J, et al. Lipopolysaccharide Upregulates Palmitoylated Enzymes of the Phosphatidylinositol Cycle: An Insight from Proteomic Studies. Mol Cell Proteomics. 2018;17(2):233–54.
Wedegaertner PB, et al. Palmitoylation is required for signaling functions and membrane attachment of Gq alpha and Gs alpha. J Biol Chem. 1993;268(33):25001–8.
Zhang X, et al. Ultradeep Palmitoylomics Enabled by Dithiodipyridine-Functionalized Magnetic Nanoparticles. Anal Chem. 2018;90(10):6161–8.
Gould NS, et al. Site-Specific Proteomic Mapping Identifies Selectively Modified Regulatory Cysteine Residues in Functionally Distinct Protein Networks. Chem Biol. 2015;22(7):965–75.
Shen LF, et al. Role of S-Palmitoylation by ZDHHC13 in Mitochondrial function and Metabolism in Liver. Sci Rep. 2017;7(1):2182.
Wan J, et al. Tracking brain palmitoylation change: predominance of glial change in a mouse model of Huntington’s disease. Chem Biol. 2013;20(11):1421–34.
Xia B, et al. Widespread Transcriptional Scanning in the Testis Modulates Gene Evolution Rates. Cell. 2020;180(2):248-262 e21.
Sohni A, et al. The Neonatal and Adult Human Testis Defined at the Single-Cell Level. Cell Rep. 2019;26(6):1501-1517.e4.
Martin BR, Cravatt BF. Large-scale profiling of protein palmitoylation in mammalian cells. Nat Methods. 2009;6(2):135–8.
Kang R, et al. Neural palmitoyl-proteomics reveals dynamic synaptic palmitoylation. Nature. 2008;456(7224):904–9.
Yue F, et al. A comparative encyclopedia of DNA elements in the mouse genome. Nature. 2014;515(7527):355–64.
Mori Y, et al. Cdc42 is required for male germline niche development in mice. Cell Rep. 2021;36(7):109550.
Heinrich A, et al. Cdc42 activity in Sertoli cells is essential for maintenance of spermatogenesis. Cell Rep. 2021;37(4):109885.
Teves, M.E., et al., Sperm Differentiation: The Role of Trafficking of Proteins. Int J Mol Sci, 2020. 21(10).
Acknowledgements
This work was supported by the National Natural Science Foundation of China (No. 31870773 to Z.J.Z. and No. 31770824 to E.Y.K.), Key Technologies Research and Development Program of Henan Province (212102311072) and Ph.D. Research Program of Xinxiang Medical University (505318) to W.S.G.
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J.G. was involved in data acquisition and analysis, validation and writing. W.C.L. was involved in methodology and data acquisition; W.S.G. was involved in data curation and software analysis. Z.J.Z. was involved in resources, funding and project administration. E.Y.K. was involved in conceptualization, funding acquisition, and writing—review & editing. All authors approved the final version.
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All animal procedures were performed according to guidelines approved by the committee on animal care at Xinxiang medical university. The approval number of the animal experiment is XXLL-20210312.
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Gao, J., Li, W., Zhang, Z. et al. Proteome-wide identification of palmitoylated proteins in mouse testis. Reprod. Sci. 29, 2299–2309 (2022). https://doi.org/10.1007/s43032-022-00919-w
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DOI: https://doi.org/10.1007/s43032-022-00919-w