Skip to main content

Advertisement

SpringerLink
Log in

Mapping quantitative trait loci underlying drought-related traits in rice using a doubled-haploid population

  • Original Paper
  • Published:
Cereal Research Communications Aims and scope Submit manuscript

Abstract

Rice is one of staple food crops in the world. Improving the drought tolerance of rice has become an important issue for maintaining or increasing its grain production under water stress caused by the greenhouse effect. For achieving this goal, quantitative trait loci (QTL) mapping is considered to be useful in plant breeding. In this study, a doubled-haploid (DH) population was used as elite materials. Based on results of polymorphism detection, 108 polymorphic markers were identified. The mapping analysis results indicated that 40 QTLs putatively associated with seven traits were found in nine linkage groups.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Log in via an institution

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2

Similar content being viewed by others

References

  • Bai X, Luo L, Yan W, Kovi MR, Zhan W, Xing Y (2010) Genetic dissection of rice grain shape using a recombinant inbred line population derived from two contrasting parents and fine mapping a pleiotropic quantitative trait locus qGL7. BMC Genet 11:16–16

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Becker J, Vos P, Kuiper M, Salamini F, Heun M (1995) Combined mapping of AFLP and RFLP markers in barley. Mol Gen Genet 249:65–73

    Article  CAS  PubMed  Google Scholar 

  • Bhattarai U, Subudhi PK (2018) Genetic analysis of yield and agronomic traits under reproductive-stage drought stress in rice using a high-resolution linkage map. Gene 669:69–76

    Article  CAS  PubMed  Google Scholar 

  • Borah P, Sharma E, Kaur A, Chandel G, Mohapatra T, Kapoor S, Khurana JP (2017) Analysis of drought-responsive signalling network in two contrasting rice cultivars using transcriptome-based approach. Sci Rep 7:42131

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Chen MY, Ali J, Fu BY, Xu JL, Zhao MF, Jiang YZ, Zhu LH, Shi YY, Yao DN, Gao YM, Li ZK (2011) Detection of drought-related loci in rice at reproductive stage using selected introgressed lines. Agric Sci China 10:1–8

    Article  CAS  Google Scholar 

  • Chen QF, Wang CL, Lu YM, Shen M, Afza R, Duren MV, Brunner H (2001) Anther culture in connection with induced mutations for rice improvement. Euphytica 120:401–408

    Article  Google Scholar 

  • Harushima Y, Yano M, Shomura A, Sato M, Shimano T, Kuboki Y, Yamamoto T, Lin SY, Antonio BA, Parco A, Kajiya H, Huang N, Yamamoto K, Nagamura Y, Kurata N, Khush GS, Sasaki T (1998) A high-density rice genetic linkage map with 2275 markers using a single F2 population. Genetics 148:479–494

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • He T, Yang Y, Tu SB, Yu MQ, Li XF (2006) Selection of interspecific hybrids for anther culture of indica rice. Plant Cell Tissue Organ Cult 86:271–277

    Article  Google Scholar 

  • Herath H, Bandara D, Samarajeewa P (2007) Effect of culture media for anther culture of indica rice varieties and hybrids of indica and japonica. Trop Agric Res Ext 10:17–22

    Article  Google Scholar 

  • Huang B, Keller WA (1989) Microspore culture technology. J Tissue Cult Methods 12:171–178

    Article  Google Scholar 

  • Huang N, McCouch S, Mew T, Parco A, Guiderdoni E (1994) Development of an RFLP map from a doubled haploid population in rice. Rice Genet News 11:134–137

    Google Scholar 

  • Jongdee B, Fukai S, Cooper M (2002) Leaf water potential and osmotic adjustment as physiological traits to improve drought tolerance in rice. Field Crops Res 76:153–163

    Article  Google Scholar 

  • Joshi R, Wani SH, Singh B, Bohra A, Dar ZA, Lone AA, Pareek A, Singla-Pareek SL (2016) Transcription factors and plants response to drought stress: current understanding and future directions. Front Plant Sci 7:1029–1029

    Article  PubMed  PubMed Central  Google Scholar 

  • Lafitte HR, Price AH, Courtois B (2004) Yield response to water deficit in an upland rice mapping population: associations among traits and genetic markers. Theor Appl Genet 109:1237–1246

    Article  CAS  PubMed  Google Scholar 

  • Lee SY, Lee JH, Kwon TO (2003) Selection of salt-tolerant doubled haploids in rice anther culture. Plant Cell Tissue Organ Cult 74:143–149

    Article  CAS  Google Scholar 

  • Liu E, Liu Y, Wu G, Zeng S, Tran Thi TG, Liang L, Liang Y, Dong Z, She D, Wang H, Zaid IU, Hong D (2016) Identification of a candidate gene for panicle length in rice (Oryza sativa L.) via association and linkage analysis. Front Plant Sci 7:596–596

    PubMed  PubMed Central  Google Scholar 

  • Lorieux M, Petrov M, Huang N, Guiderdoni E, Ghesquière A (1996) Aroma in rice: genetic analysis of a quantitative trait. Theor Appl Genet 93:1145–1151

    Article  CAS  PubMed  Google Scholar 

  • Luo ZX, Wu R (1988) A simple method for the transformation of rice via the pollen-tube pathway. Plant Mol Bio Rep 6:165–174

    Article  CAS  Google Scholar 

  • Lo J, Lin G, Hou F (2009) Development of a new japonica rice variety “Tainan 13”. Res Bull of Tai Dist Agric Res and Ext Sta 54:1–13 (in Chinese with an English abstract)

  • Maheswaran M, Subudhi PK, Nandi S, Xu JC, Parco A, Yang DC, Huang N (1997) Polymorphism, distribution, and segregation of AFLP markers in a doubled haploid rice population. Theor Appl Genet 94:39–45

    Article  CAS  PubMed  Google Scholar 

  • Mishra R, Rao GJN, Rao RN, Kaushal P (2015) Development and characterization of elite doubled haploid lines from two indica rice hybrids. Rice Sci 22:290–299

    Article  Google Scholar 

  • Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8:4321–4325

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Nandi S, Subudhi PK, Senadhira D, Manigbas NL, Sen-Mandi S, Huang N (1997) Mapping QTLs for submergence tolerance in rice by AFLP analysis and selective genotyping. Mol Gen Genet 255:1–8

    Article  CAS  PubMed  Google Scholar 

  • Nguyen H, Chen XY, Jiang M, Wang Q, Deng L, Zhang WZ, Shu QY (2016) Development and molecular characterization of a doubled haploid population derived from a hybrid between japonica rice and wide compatible indica rice. Breed Sci 66:552–559

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Nikaido A, Yoshimaru H, Tsumura Y, Suyama Y, Murai M, Nagasaka K (1999) Segregation distortion for AFLP markers in Cryptomeria japonica. Genes Genet Syst 74:55–59

    Article  CAS  Google Scholar 

  • Orjuela J, Garavito A, Bouniol M, Arbelaez JD, Moreno L, Kimball J, Wilson G, Rami JF, Tohme J, McCouch SR, Lorieux M (2010) A universal core genetic map for rice. Theor Appl Genet 120:563–572

    Article  CAS  PubMed  Google Scholar 

  • Raina SK, Zapata FJ (1997) Enhanced anther culture efficiency of indica rice (Oryza sativa L.) through modification of the culture media. Plant Breed 116:305–315

    Article  CAS  Google Scholar 

  • Ramchander S, Raveendran M, Robin S (2016) Mapping QTLs for physiological traits associated with drought tolerance in rice (Oryza Sativa L.). J Investig Genom 3:56–61

    Google Scholar 

  • Saji KV, Sujatha M (1998) Embryogenesis and plant regeneration in anther culture of sunflower (Helianthus annuus L.). Euphytica 103:1–7

    Article  Google Scholar 

  • Shamasbi FV, Jamali SH, Behzad S, Babak AM (2017) Genetic mapping of quantitative trait loci for yield-affecting traits in a barley doubled haploid population derived from Clipper × Sahara 3771. Front Plant Sci 8:1–9

    Google Scholar 

  • Son YJ, Lee GH, Lee HS, Handoyo T, Yun BW, Kim KM (2014) Analysis of high-resolution QTL markers associated with rice yields using data for two consecutive years in different environmental conditions. Nat Sci 6:818–827

    Google Scholar 

  • Spada A, Caporali E, Marziani G, Portaluppi P, Restivo FM, Tassi F, Falavigna A (1998) A genetic map of Asparagus officinalis based on integrated RFLP, RAPD and AFLP molecular markers. Theor Appl Genet 97:1083–1089

    Article  CAS  Google Scholar 

  • Subudhi PK, Huang N (1999) RAPD mapping in a doubled haploid population of rice (Oryza Sativa L.). Hereditas 130:41–49

    Article  CAS  PubMed  Google Scholar 

  • Virk PS, Ford-lloyd BV, Newbury HJ (1998) Mapping AFLP markers associated with subspecific differentiation of Oryza sativa (rice) and an investigation of segregation distortion. Heredity 81:613–620

    Article  CAS  Google Scholar 

  • Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407–4414

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wang JP, Bughrara SS, Nelson CJ (2008) Morpho-physiological responses of several fescue grasses to drought stress. Am Soc Hortic Sci 43:776–783

    Google Scholar 

  • Williams JG, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 18:6531–6535

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Xu Q, Yuan XP, Yu HY, Wang YP, Tang SX, Wei XH (2011) Mapping QTLs for drought tolerance at seedling stage in rice using doubled haploid population. Rice Sci 18:23–28

    Article  Google Scholar 

  • You A, Lu X, Jin H, Ren X, Liu K, Yang G, Yang H, Zhu L, He G (2006) Identification of quantitative trait loci across recombinant inbred lines and testcross populations for traits of agronomic importance in rice. Genetics 172:1287–1300

    Article  PubMed  PubMed Central  Google Scholar 

  • Zaman NK, Abdullah MY, Othman S, Zaman NK (2018) Growth and physiological performance of aerobic and lowland rice as affected by water stress at selected growth stages. Rice Sci 25:82–93

    Article  Google Scholar 

  • Zeng YX, Xia LZ, Wen ZH, Ji ZJ, Zeng DL, Qian Q, Yang CD (2015) Mapping resistant QTLs for rice sheath blight disease with a doubled haploid population. J Integr Agric 14:801–810

    Article  CAS  Google Scholar 

  • Zhao B, Deng QM, Zhang QJ, Li JQ, Ye SP, Liang YS, Peng Y, Li P (2006) Analysis of segregation distortion of molecular markers in F2 population of rice. Acta Genet Sin 33:449–457

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

  1. Department of Bioagricultural Sciences, National Chiayi University, Chiayi, 60004, Taiwan

    Phichitra Wongchuwech & Yueh-Long Chang

  2. ChiaYi Branch Station, Tainan District Agricultural Research & Extension Station, Council of Agriculture, Chiayi, 61150, Taiwan

    Rong-Kuen Chen

Authors
  1. Phichitra Wongchuwech
    View author publications

    You can also search for this author in PubMed Google Scholar

  2. Rong-Kuen Chen
    View author publications

    You can also search for this author in PubMed Google Scholar

  3. Yueh-Long Chang
    View author publications

    You can also search for this author in PubMed Google Scholar

Corresponding author

Correspondence to Yueh-Long Chang.

Supplementary Information

Below is the link to the electronic supplementary material.

Supplementary file1 (PPTX 1622 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Wongchuwech, P., Chen, RK. & Chang, YL. Mapping quantitative trait loci underlying drought-related traits in rice using a doubled-haploid population. CEREAL RESEARCH COMMUNICATIONS 50, 245–252 (2022). https://doi.org/10.1007/s42976-021-00187-5

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s42976-021-00187-5

Keywords

Search

Navigation