Abstract
In the present study, Alkalihalobacillus clausii 088AE was evaluated for the production of antimicrobial compounds, their characterisation, and identification. The results showed that, 48-h-old A. clausii supernatant is able to inhibit the growth of indicator bacteria Micrococcus luteus MTCC 106T (7.0 ± 0.51 mm). The cultivation of 088AE on solid media along with XAD16N beads for 5 days, and isopropanol extraction of antimicrobial compound thereof showed enhanced antimicrobial activity (19.67 ± 0.58 mm) against indicator strain. Further purification with a reversed-phase C18 cartridge yielded a powder with 389.12 ± 10.08 μg of protein per mg. The UV spectra of the sample revealed the characteristic aromatic amino acid peaks at 262 and 276 nm. The results of triple-quadrupole mass spectrometry showed a peak of 1055 m/z, confirming the existence of 10542+, i.e., 2108 Da, suggestive of class I lantibiotic clausin. Furthermore, in silico analysis confirmed the presence of genes responsible for the production of lanthipeptide clausin. The clausin is stable in the presence of proteases (trypsin and pepsin), high temperature (100 °C), pH up to 11 and showed antimicrobial activity against Listeria monocytogenes ATCC 19115, M. luteus, and Staphylococcus aureus ATCC 6538P. Therefore, it could be useful to control gut infections caused by Gram-positive pathogens.
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References
Hill C, Guarner F, Reid G, Gibson GR, Merenstein DJ, Pot B, Morelli L, Canani RB, Flint HJ, Salminen S, Calder PC, Sanders ME (2014) Expert consensus document: The International Scientific Association for Probiotics and Prebiotics consensus statement on the scope and appropriate use of the term probiotic. Nat Rev Gastroenterol Hepatol 11:506–514. https://doi.org/10.1038/nrgastro.2014.66
Todorov SD, Ivanova IV, Popov I, Weeks R, Chikindas ML (2022) Bacillus spore-forming probiotics: benefits with concerns? Crit Rev Microbiol 48:513–530. https://doi.org/10.1080/1040841X.2021.1983517
Ghelardi E, Abreu y Abreu AT, Marzet CB, Calatayud GA, Perez M III, Moschione Castro AP (2022) Current progress and future perspectives on the use of Bacillus clausii. Microorganisms 10:1246. https://doi.org/10.3390/microorganisms10061246
Senesi S, Celandroni F, Tavanti A, Ghelardi E (2001) Molecular characterization and identification of Bacillus clausii strains marketed for use in oral bacteriotherapy. Appl Environ Microbiol 67:834–839. https://doi.org/10.1128/AEM.67.2.834-839.2001
Wong-Chew RM, de Castro JAA, Morelli L, Perez M, Ozen M (2022) Gut immune homeostasis: the immunomodulatory role of Bacillus clausii, from basic to clinical evidence. Expert Rev Clin Immunol 18:717–729. https://doi.org/10.1080/1744666X.2022.2085559
Ahire JJ, Kashikar MS, Madempudi RS (2020) Survival and germination of Bacillus clausii UBBC07 spores in in vitro human gastrointestinal tract simulation model and evaluation of clausin production. Front Microbiol 11:1010. https://doi.org/10.3389/fmicb.2020.01010
Bressollier P, Brugo MA, Robineau P, Schmitter JM, Sofeir M, Urdaci MC, Verneuil B (2014) Peptide compound with biological activity, its preparation and its applications. US Patent 2014:8691773
Bouhss A, Al-Dabbagh B, Vincent M, Odaert B, Aumont-Nicaise M, Bressolier P, Desmadril M, Mengin-Lecreulx D, Urdaci MC, Gallay J (2009) Specific interactions of clausin, a new lantibiotic, with lipid precursors of the bacterial cell wall. Biophys J 97:1390–1397. https://doi.org/10.1016/j.bpj.2009.06.029
Dischinger J, Basi Chipalu S, Bierbaum G (2014) Lantibiotics: promising candidates for future applications in health care. Int J Med Microbiol 304:51–62. https://doi.org/10.1016/j.ijmm.2013.09.003
Bonelli RR, Schneider T, Sahl HG, Wiedemann I (2006) Insights into in vivo activities of lantibiotics from gallidermin and epidermin mode-of-action studies. Antimicrob Agents Chemother 50:1449–1457. https://doi.org/10.1128/AAC.50.4.1449-1457.2006
Lindsay MR, Jonathan RC, Nair SK, van der Donk WA (2017) Mechanistic understanding of lanthipeptide biosynthetic enzymes. Chem Rev 117:5457–5520. https://doi.org/10.1021/acs.chemrev.6b00591
GRAS notice (GRN) No. 971(2020) GRAS notification for Bacillus clausii strain 088AE spore preparation. https://www.fda.gov/media/151721/download
Maity C, Gupta AK (2021) Therapeutic efficacy of probiotic Alkalihalobacillus clausii 088AE in antibiotic-associated diarrhea: a randomized controlled trial. Heliyon 7:e07993. https://doi.org/10.1016/j.heliyon.2021.e07993
Maity C, Bagkar P, Dixit Y, Tiwari A (2022) Alkalihalobacillus clausii 088AE as a functional and medical food ingredient: assessment of in vitro protein digestibility and food calorie reduction. Int J Food Sci Technol 57:3440–3455. https://doi.org/10.1111/ijfs.15668
Ahire JJ, Kashikar MS, Lakshmi SG, Madempudi R (2020) Identification and characterization of antimicrobial peptide produced by indigenously isolated Bacillus paralicheniformis UBBLi30 strain. 3 Biotech 10:112. https://doi.org/10.1007/s13205-020-2109-6
Andrews JM (2001) Determination of minimum inhibitory concentrations. J Antimicrob Chemother 48:5–16. https://doi.org/10.1093/jac/48.suppl_1.5
Ahire JJ, Neveling DP, Hattingh M, Dicks LM (2015) Ciprofloxacin-eluting nanofibers inhibits biofilm formation by Pseudomonas aeruginosa and a methicillin-resistant Staphylococcus aureus. PLoS One 10:e0123648. https://doi.org/10.1371/journal.pone.0123648
Auke JH, Jong A, Song C, Viel JH, Kok J, Kuipers OP (2018) BAGEL4: a user-friendly web server to thoroughly mine RiPPs and bacteriocins. Nucleic Acids Res 46:W278–W281. https://doi.org/10.1093/nar/gky383
Blin K, Wolf T, Chevrette MG, Lu X, Schwalen CJ, Kautsar SA (2017) antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification. Nucleic Acids Res 45:W36–W41. https://doi.org/10.1093/nar/gkx319
UniProt Consortium (2023) UniProt: the Universal Protein Knowledgebase in. Nucleic Acids Res 51:D523–D531. https://doi.org/10.1093/nar/gkac1052
Gasteiger E, Hoogland C, Gattiker A, Duvaud S, Wilkins MR, Appel RD, Bairoch A (2005) Protein Identification and Analysis Tools on the Expasy Server. In: Walker JM (ed) The proteomics protocols handbook. Humana Press, pp 571–607
Silva DR, Sardi JDCO, de Souza PN, Roque SM, da Silva ACB, Rosalen PL (2020) Probiotics as an alternative antimicrobial therapy: current reality and future directions. J Funct Foods 73:104080. https://doi.org/10.1016/j.jff.2020.104080
Urdaci MC, Bressollier P, Pinchuk I (2004) Bacillus clausii probiotic strains: antimicrobial and immunomodulatory activities. J Clin Gastroenterol 38:S86–S90. https://doi.org/10.1097/01.mcg.0000128925.06662.69
Han S, Lu Y, Xie J, Fei Y, Zheng G, Wang Z, Liu J, Lv L, Ling Z, Berglund B, Yao M (2021) Probiotic gastrointestinal transit and colonization after oral administration: A long journey. Front Cell Infect Microbiol 11:609722. https://doi.org/10.3389/fcimb.2021.609722
Aitken A, Learmonth MP (2009) Protein determination by UV absorption. In: Walker JM (ed) The protein protocols handbook. Humana Press), Totowa, NJ, pp 3–6. https://doi.org/10.1385/1-59259-169-8:3
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The authors gratefully acknowledge the support of Mr. VL Rathi and Mr. M Kabra at Advanced Enzyme Technologies Limited, Thane, India.
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YD: material preparation, analysis, data collection, and preparation of the first draft. KK, NB: material preparation and analysis. JJA: study conception, design, project management, in silico analysis, extensive editing and writing of final draft. DS: review. All authors read and approved the final manuscript.
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Dixit, Y., Kanojiya, K., Bhingardeve, N. et al. Identification and characterisation of antimicrobial compound produced by probiotic Alkalihalobacillus clausii 088AE. Braz J Microbiol 54, 1737–1743 (2023). https://doi.org/10.1007/s42770-023-01076-1
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DOI: https://doi.org/10.1007/s42770-023-01076-1