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Genome sequence of Xanthomonas fuscans subsp. fuscans strain Xff49: a new isolate obtained from common beans in Southern Brazil

  • Bacterial, Fungal and Virus Molecular Biology - Research Paper
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Abstract

The genus Xanthomonas comprises Gram-negative bacteria, many of which are phytopathogens. Xanthomonas fuscans subsp. fuscans is one of the most devastating pathogens affecting the bean plant, resulting in the common bacterial blight of bean (CBB). The disease is mainly foliar and affects a wide variety of bean species, thus acting as the yield-limiting factor for the bean crop. Here, we report the whole-genome sequencing of a new strain of X. fuscans subsp. fuscans, named Xff49, isolated from the infected and symptomatic beans from Capão do Leão, Southern Brazil. The genetic analysis demonstrated the presence of single-nucleotide variants (SNVs) in this strain, potentially affecting the mobilome, cell mobility, and inorganic ion metabolism. In addition, the analysis resulted in the identification of a new plasmid similar to the pAX22 derived from Achromobacter denitrificans, which was named plX, along with plA and plC, previously reported in other strains of X. fuscans subsp. fuscans. Xff49 represents the first Brazilian genome of X. fuscans subsp. fuscans and might provide useful information applicable to the studies of phylogenetics, evolution, and pathogenomics, thereby allowing a better understanding of the genomic features present in the Brazilian strains.

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Funding

This work was financially supported by Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq, Brazil).

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Authors and Affiliations

  1. Laboratório de Bioinformática e Proteômica, Centro de Desenvolvimento Tecnológico, Universidade Federal de Pelotas, Capão do Leão, Brazil

    Frederico Schmitt Kremer, Amanda Munari Guimarães, Rafael dos Santos Danelon Woloski & Luciano da Silva Pinto

  2. Laboratório de Bacteriologia Vegetal, Faculdade de Agronomia Eliseu Maciel, Universidade Federal de Pelotas, Capão do Leão, Brazil

    Ismail Teodoro de Souza Junior & Andrea Bittencourt Moura

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  1. Frederico Schmitt Kremer
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  4. Rafael dos Santos Danelon Woloski
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Kremer, F.S., de Souza Junior, I.T., Guimarães, A.M. et al. Genome sequence of Xanthomonas fuscans subsp. fuscans strain Xff49: a new isolate obtained from common beans in Southern Brazil. Braz J Microbiol 50, 357–367 (2019). https://doi.org/10.1007/s42770-019-00050-0

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