Abstract
For decades, the production of acid lime (Citrus aurantifolia) in Oman has been affected by diseases caused by phytoplasmas, notably witches’ broom disease of lime (WBDL). In recent years, a new phytoplasma strain in Oman has been observed that promotes the sudden decline of lime (SDL). The molecular mechanisms behind its pathogenicity and mode of interaction with citrus host plants is still completely unknown. In this study, we evaluated the differential expression of genes in symptomatic and asymptomatic lime trees in Oman using a real-time quantitative PCR assay. Among 27 regulatory and biosynthesis-related genes tested in Citrus aurantifolia plants during phytoplasma infection, we verified the presence of 14 responsive genes in plants showing SDL symptoms, revealing a specific set of SDL-responsive genes. Quantification data of endogenous 3-indoleacetic acid and jasmonic acid show an unbalanced hormonal content in symptomatic lime trees, corroborating the gene expression data. The identification of regulatory genes differentially expressed in plant-phytoplasma interactions during SDL will help to elucidate the mechanisms possibly involved in defense responses, development and death-triggered signals in infected citrus plants.
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References
Al-Abadi SY, Al-Sadi AM, Dickinson M, Al-Hammadi MS, Al-Shariqi R, Al-Yahyai RA, Kazerooni EA, Bertaccini A (2016) Population genetic analysis reveals a low level of genetic diversity of ‘Candidatus Phytoplasma aurantifolia’ causing witches’ broom disease in lime. SpringerPlus 5:1701
Alves MS, Dadalto SP, Gonçalves AB, de Souza GB, Barros VA, Fietto LG (2014) Transcription factor functional protein-protein interactions in plant defense responses. Proteomes 2:85–106
Al-Yahyai R, Khan I, Al-Said F, Al-Sadi A, Al-Wahaibi A, Deadman M (2012) Status of Citrus aurantifolia infected with witches’ broom disease of lime in Oman. Acta Horticulturae 928:375–381
Anderson PK, Cunningham AA, Patel NG, Morales FJ, Epstein PR, Daszak P (2004) Emerging infectious diseases of plants: pathogen pollution, climate change and agrotechnology drivers. Trends in Ecology & Evolution 19:535–544
Andolfo G, Ercolano MR (2015) Plant innate immunity multicomponent model. Frontiers in Plant Science 6:987
Askari N, Salehi Jouzani G, Mousivand M, Foroutan A, Hagh Nazari A, Abbasalizadeh S, Soheilivand S, Mardi M (2011) Evaluation of anti-phytoplasma properties of surfactin and tetracycline towards lime witches’ broom disease using real-time PCR. Journal of Microbiology and Biotechnology 21:81–88
Bai X, Correa VR, Toruño TY, Ammar E-D, Kamoun S, Hogenhout SA (2009) AY-WB phytoplasma secretes a protein that targets plant cell nuclei. Molecular Plant-Microbe Interactions 22:18–30
Birkenbihl RP, Diezel C, Somssich IE (2012) Arabidopsis WRKY33 is a key transcriptional regulator of hormonal and metabolic responses toward Botrytis cinerea infection. Plant Physiology 159:266–285
Bustin SA, Benes V, Garson JA, Hellemans J, Huggett J, Kubista M, Mueller R, Nolan T, Pfaffl MW, Shipley GL, Vandesompele J, Wittwer CT (2009) The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clinical Chemistry 55:611–622
Garavaglia BS, Thomas L, Gottig N, Zimaro T, Garofalo CG, Gehring C, Ottado J (2010) Shedding light on the role of photosynthesis in pathogen colonization and host defense. Communicative & Integrative Biology 3:382–384
Hogenhout SA, Oshima K, Ammar E-D, Kakizawa S, Kingdom HN, Namba S (2008) Phytoplasmas: bacteria that manipulate plants and insects. Molecular Plant Pathology 9:403–423
Hoshi A, Oshima K, Kakizawa S, Ishii Y, Ozeki J, Hashimoto M, Komatsu K, Kagiwada S, Yamaji Y, Namba S (2009) A unique virulence factor for proliferation and dwarfism in plants identified from a phytopathogenic bacterium. Proceedings of the National Academy of Sciences, USA 106:6416–6421
Jagoueix-Eveillard S, Tarendeau F, Guolter K, Danet JL, Bové JM, Garnier M (2001) Catharanthus roseus genes regulated differentially by mollicute infections. Molecular Plant-Microbe Interactions 14:225–233
Jones JDG, Dangl JL (2006) The plant immune system. Nature 444:323–329
Jung C, Shim JS, Seo JS, Lee HY, Kim CH, Choi YD, Cheong J-J (2010) Non-specific phytohormonal induction of AtMYB44 and suppression of jasmonate-responsive gene activation in Arabidopsis thaliana. Molecules and Cells 29:71–76
Kazan K, Lyons R (2014) Intervention of phytohormone pathways by pathogen effectors. Plant Cell 26:2285–2309
Lamichhane JR, Venturi V (2015) Synergisms between microbial pathogens in plant disease complexes: a growing trend. Frontiers in Plant Science 6:385
Li J, Brader G, Palva ET (2004) The WRKY70 transcription factor: a node of convergence for jasmonate-mediated and salicylate-mediated signals in plant defense. Plant Cell 16:319–331
Li J, Brader G, Kariola T, Palva ET (2006) WRKY70 modulates the selection of signaling pathways in plant defense. Plant Journal 46:477–491
MacLean AM, Sugio A, Makarova OV, Findlay KC, Grieve VM, Tóth R, Nicolaisen M, Hogenhout SA (2011) Phytoplasma effector SAP54 induces indeterminate leaf-like flower development in Arabidopsis plants. Plant Physiology 157:831–841
MacLean AM, Orlovskis Z, Kowitwanich K, Zdziarska AM, Angenent GC, Immink RGH, Hogenhout SA (2014) Phytoplasma effector SAP54 hijacks plant reproduction by degrading MADS-box proteins and promotes insect colonization in a RAD23-dependent manner. PLoS Biology 12:e1001835
Maejima K, Iwai R, Himeno M, Komatsu K, Kitazawa Y, Fujita N, Ishikawa K, Fukuoka M, Minato N, Yamaji Y, Oshima K, Namba S (2014) Recognition of floral homeotic MADS domain transcription factors by a phytoplasmal effector, phyllogen, induces phyllody. Plant Journal 78:541–554
Maejima K, Kitazawa Y, Tomomitsu T, Yusa A, Neriya Y, Himeno M, Yamaji Y, Oshima K, Namba S (2015) Degradation of class E MADS-domain transcription factors in Arabidopsis by a phytoplasmal effector, phyllogen. Plant Signaling & Behavior 10:e1042635
Mardi M, Karimi Farsad L, Gharechahi J, Salekdeh GH (2015) In-depth transcriptome sequencing of mexican lime trees infected with 'Candidatus Phytoplasma aurantifolia'. PLoS One 10:e0130425
Mashiguchi K, Tanaka K, Sakai T, Sugawara S, Kawaide H, Natsume M, Hanada A, Yaeno T, Shirasu K, Yao H, McSteen P, Zhao Y, Hayashi K-i, Kamiya Y, Kasahara H (2011) The main auxin biosynthesis pathway in Arabidopsis. Proceedings of the National Academy of Sciences, USA 108:18512–18517
Mayer CJ, Vilcinskas A, Gross J (2008) Phytopathogen lures its insect vector by altering host plant odor. Journal of Chemical Ecology 34:1045–1049
Minato N, Himeno M, Hoshi A, Maejima K, Komatsu K, Takebayashi Y, Kasahara H, Yusa A, Yamaji Y, Oshima K, Kamiya Y, Namba S (2014) The phytoplasmal virulence factor TENGU causes plant sterility by downregulating of the jasmonic acid and auxin pathways. Scientific Reports 4:7399
Mitra S, Baldwin IT (2014) RuBPCase activase (RCA) mediates growth-defense trade-offs: silencing RCA redirects jasmonic acid (JA) flux from JA-isoleucine to methyl jasmonate (MeJA) to attenuate induced defense responses in Nicotiana attenuata. New Phytologist 201:1385–1395
Monavarfeshani A, Mirzaei M, Sarhadi E, Amirkhani A, Khayam Nekouei M, Haynes PA, Mardi M, Salekdeh GH (2013) Shotgun proteomic analysis of the Mexican lime tree infected with 'Candidatus Phytoplasma aurantifolia'. Journal of Proteome Research 12:785–795
Müller M, Munné-Bosch S (2011) Rapid and sensitive hormonal profiling of complex plant samples by liquid chromatography coupled to electrospray ionization tandem mass spectrometry. Plant Methods 7:37
Nejat N, Cahill DM, Vadamalai G, Ziemann M, Rookes J, Naderali N (2015) Transcriptomics-based analysis using RNA-Seq of the coconut (Cocos nucifera) leaf in response to yellow decline phytoplasma infection. Molecular Genetics and Genomics 290:1899–1910
Orlovskis Z, Hogenhout SA (2016) A bacterial parasite effector mediates insect vector attraction in host plants independently of developmental changes. Frontiers in Plant Science 7:885
Oshima K, Maejima K, Namba S (2013) Genomic and evolutionary aspects of phytoplasmas. Frontiers in Microbiology 4:230
Pauwels L, Goossens A (2011) The JAZ proteins: a crucial interface in the jasmonate signaling cascade. Plant Cell 23:3089–3100
Pfaffl MW (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Research 29:e45
Pfaffl MW, Horgan GW, Dempfle L (2002) Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR. Nucleic Acids Research 30:e36
Pfaffl MW, Tichopad A, Prgomet C, Neuvians TP (2004) Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-excel-based tool using pairwise correlations. Biotechnology Letters 26:509–515
Pracros P, Renaudin J, Eveillard S, Mouras A, Hernould M (2006) Tomato flower abnormalities induced by stolbur phytoplasma infection are associated with changes of expression of floral development genes. Molecular Plant-Microbe Interactions 19:62–68
Queiroz RB, Donkersley P, Silva FN, Al-Mahmmoli IH, Al-Sadi AM, Carvalho CM, Elliot SL (2016) Invasive mutualisms between a plant pathogen and insect vectors in the Middle East and Brazil. Royal Society Open Science 3:160557
Shahryari F, Safarnejad MR, Shams-Bakhsh M, Jouzani GRS (2010) Toward immunomodulation of witches' broom disease of lime (WBDL) by targeting immunodominant membrane protein (IMP) of 'Candidatus Phytoplasma aurantifolia. Communications in Agricultural and Applied Biological Sciences 75:789–795
Shan X, Li C, Peng W, Gao B (2011a) New perspective of jasmonate function in leaf senescence. Plant Signaling & Behavior 6:575–577
Shan X, Wang J, Chua L, Jiang D, Peng W, Xie D (2011b) The role of Arabidopsis rubisco activase in jasmonate-induced leaf senescence. Plant Physiology 155:751–764
Shim JS, Jung C, Lee S, Min K, Lee Y-W, Choi Y, Lee JS, Song JT, Kim J-K, Choi YD (2013) AtMYB44 regulates WRKY70 expression and modulates antagonistic interaction between salicylic acid and jasmonic acid signaling. Plant Journal 73:483–495
Silva FN, Souza AN, Al-Mahmooli I, Al-Sa’di AM, Carvalho CM (2015) A new disease in Citrus aurantifolia in Oman, "sudden decline", is associated with a pathogen complex including a 16SrII group phytoplasma. Phytopathogenic Mollicutes 5:S101
Smart CD, Schneider B, Blomquist CL, Guerra LJ, Harrison NA, Ahrens U, Lorenz KH, Seemüller E, Kirkpatrick BC (1996) Phytoplasma-specific PCR primers based on sequences of the 16S-23S rRNA spacer region. Applied and Environmental Microbiology 62:2988–2993
Sugawara K, Honma Y, Komatsu K, Himeno M, Oshima K, Namba S (2013) The alteration of plant morphology by small peptides released from the proteolytic processing of the bacterial peptide TENGU. Plant Physiology 162:2005–2014
Sugio A, MacLean AM, Hogenhout SA (2014) The small phytoplasma virulence effector SAP11 contains distinct domains required for nuclear targeting and CIN-TCP binding and destabilization. New Phytologist 202:838–848
Taheri F, Nematzadeh G, Zamharir MG, Nekouei MK, Naghavi M, Mardi M, Salekdeh GH (2011) Proteomic analysis of the Mexican lime tree response to 'Candidatus Phytoplasma aurantifolia' infection. Molecular BioSystems 7:3028–3035
Tai C-F, Lin C-P, Sung Y-C, Chen J-C (2013) Auxin influences symptom expression and phytoplasma colonisation in periwinkle infected with periwinkle leaf yellowing phytoplasma. Annals of Applied Biology 163:420–429
Tsuda K, Katagiri F (2010) Comparing signaling mechanisms engaged in pattern-triggered and effector-triggered immunity. Current Opinion in Plant Biology 13:459–465
Zamharir MG, Mardi M, Alavi SM, Hasanzadeh N, Nekouei MK, Zamanizadeh HR, Alizadeh A, Salekdeh GH (2011) Identification of genes differentially expressed during interaction of Mexican lime tree infected with 'Candidatus Phytoplasma aurantifolia'. BMC Microbiology 11:1
Zhao Y (2012) Auxin biosynthesis: a simple two-step pathway converts tryptophan to indole-3-acetic acid in plants. Molecular Plant 5:334–338
Zhao Y, Wei W, Lee I-M, Shao J, Suo X, Davis RE (2013) The iPhyClassifier, an interactive online tool for phytoplasma classification and taxonomic assignment. Methods in Molecular Biology 938:329–338
Zheng Z, Qamar SA, Chen Z, Mengiste T (2006) Arabidopsis WRKY33 transcription factor is required for resistance to necrotrophic fungal pathogens. Plant Journal 48:592–605
Acknowledgements
This work was funded by Vale S.A. MSA was a Vale postdoctoral fellow. CMC is the recipient of a CNPq research productivity fellowship.
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MSA and CMC conceived and designed the research. MSA, DSPSFG, PMPV, FNS, CEV, IA and AMA conducted the experiments. MSA and DSPSFG analyzed the data. MSA wrote the manuscript. All authors read and approved the manuscript.
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Supplementary Figure S1
- Agarose gel electrophoresis of 1.2 kb long PCR products of ‘Ca. P. aurantifolia’-related strain 16S ribossomal DNA, from three symptomatic C. aurantifolia midribs samples with sudden decline of lime (SDL), from a total of 12 symptomatic samples. M, 1 kb plus DNA ladder (Thermo-Fisher); (−), water control; 1, 2 and 3, midrib samples from three of 12 lime trees displaying SDL symptoms. (JPG 13 kb)
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Alves, M.S., Silva, F.N., Guimarães, D.S.P.S.F. et al. Differential expression and phytohormone unbalance in Citrus aurantifolia plants during “sudden decline of lime”, a new phytoplasma disease of citrus. Trop. plant pathol. 43, 520–532 (2018). https://doi.org/10.1007/s40858-018-0223-3
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DOI: https://doi.org/10.1007/s40858-018-0223-3