Abstract
Medicinal plants have been used for the treatment of diseases and its demand is expanding in both developed and developing countries. The extensive consumption to meet the demand and supply ratio exerts a heavy strain on the existing resources. This subsequently led to adulteration and substitution. The DNA-based method is the most widely adopted for the determination of adulteration in herbal products. Quality DNA extraction is regarded as the prerequisite for the application of DNA-based techniques in herbal plant authentication. Various protocols for DNA isolation could only be applied to a small number of species and are often expensive and time-consuming. Furthermore, herbal products undergo various conditions and are mixed with different substances, these factors affect the integrity of the DNA making it difficult to isolate. In this study, a simple, cost-effective and rapid CTAB-based DNA extraction protocol was developed which successfully isolated quality DNA from different samples of medicinal plants and their respective adulterants without using liquid nitrogen. Quality DNA was also isolated from different herbal products of reputed companies. The protocol was also validated by the isolation of quality DNA from different herbarium samples. DNA quality of both plants and herbal drugs was measured by A260/A280 ratio, which was ranging between 1.3 and 1.8. Thus, the developed protocol can be adapted for medicinal plants and herbal drugs quality DNA isolation and authentication as well as herbarium samples for molecular identifications. The isolated DNA was found to be of good quality and sufficient quantity for ISSR-PCR, SCoT-PCR and restriction digestion reactions. The protocol has successfully demonstrated its suitability for different genomics downstream applications.
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References
Ajmal Iqbal IA, Ahmad H, Nadeem MS, Nisar M, Riaz H (2013) An efficient DNA extraction protocol for medicinal plants. Int J Biosci 3:30–35. https://doi.org/10.12692/ijb/3.7.30-35
Amani J, Kazemi R, Salmanian AAR, AH (2011) A simple and rapid leaf genomic DNA extraction method for polymerase chain reaction analysis. Iran J Biotechnol 9:69–71
Dellaporta SL, Wood J, Hicks JB (1983) A plant DNA miniprepration: version II. Plant Mol Biol Rep 1:19–21. https://doi.org/10.1007/BF02712670
Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. CJPAS Focus 12:13–15
Dutta S, Gibore RN, Sharma PK (2018) Pharmacovigilance: a need in ayurvedic medicine system. Int J Green Pharm 12:1. https://doi.org/10.22377/ijgp.v12i01.1597
Hong YT, Fu LS, Chung LH, Hung SC, Huang YT, Chi CS (2006) Fanconi’s syndrome, interstitial fibrosis and renal failure by aristolochic acid in Chinese herbs. Pediatr Nephrol 21:577–579. https://doi.org/10.1007/s00467-006-0017-6
Ichim MC (2019) The DNA-based authentication of commercial herbal products reveals their globally widespread adulteration. Front Pharmacol 10:1227. https://doi.org/10.3389/fphar.2019.01227
Joshi K, Chavan P, Warude D, Patwardhan B (2004) Molecular markers in herbal drug technology. Curr Sci 159–165
Keim P, Olson TC, Shoemaker RC (1988) A rapid protocol for isolating soybean DNA. Soybean Genet Newsl 15:152
Khan MSA, Ahmad I (2019) Chapter 1 herbal medicine: current trends and future prospects. In: Khan MSA, Ahmad I, Chattopadhyay (eds) New look to phytomedicine, advancements in herbal products as novel drug leads. Academic Press, Elsevier, United States
Khanuja SPS, Shasany AK, Darokar MP, Kumar S (1999) Rapid isolation of DNA from dry and fresh samples of plants producing large amounts of secondary metabolites and essential oils. Plant Mol Biol Rep 17:74–80. https://doi.org/10.1023/A:1007528101452
Križman M, Jakše J, Baričevič D, Javornik B, Prošek M (2006) Robust CTAB-activated charcoal protocol for plant DNA extraction. Acta Agric Slov 87:427–433
Kumar A, Pushpangadan P, Mehrotra S (2003) Extraction of highmolecular weight DNA from dry root tissue of Berberis lycium suitable for RAPD. Plant Mol Biol Rep 21:309a–309d. https://doi.org/10.1007/BF02772807
Lodhi AM, Ye G-N, Norman F, Weeden BIR (1994) A simple and efficient method for DNA extraction from grapevine cultivars, Vitis species and Ampelopsis. Plant Mol Biol Rep 12:6–13. https://doi.org/10.1007/BF02668658
Michl J, Jennings HM, Kite GC, Ingrouille MJ, Simmonds MSJ, Heinrich M (2013) Is aristolochic acid nephropathy a widespread problem in developing countries? A case study of Aristolochia indica L. in Bangladesh using an ethnobotanical-phytochemical approach. J Ethnopharmacol 149:235–244. https://doi.org/10.1016/j.jep.2013.06.028
Mishra MK, Rani NS, Ram AS, Sreenath HL et al (2008) A simple method of DNA extraction from coffee seeds suitable for PCR analysis. Afr J Biotechnol 7:409–413
Mishra P, Kumar A, Nagireddy A, Mani DN, Shukla AK, Tiwari R, Sundaresan V (2016) DNA barcoding: an efficient tool to overcome authentication challenges in the herbal market. Plant Biotechnol J 1:8–21. https://doi.org/10.1111/pbi.12419
Mohammed Abubakar B, Mohd Salleh F, Shamsir Omar MS, Wagiran A (2017) Review: DNA barcoding and chromatography fingerprints for the authentication of botanicals in herbal medicinal products. Evid Based Complement Altern Med 2017:1352948. https://doi.org/10.1155/2017/1352948
Newmaster SG, Grguric M, Shanmughanandhan M, Ramalingam S, Ragupathy S (2013) DNA barcoding detects contamination and substitution in North American herbal products. BMC Med 11:222–235. https://doi.org/10.1186/1741-7015-11-222
Ounzar BC, Hartmann C, Rode A, Benslimane A (1998) Date palm DNA minipreparation without liquid nitrogen. Plant Mol Biol Rep 16:263–269. https://doi.org/10.1023/A:1007572427029
Paterson AH, Brubaker CL, Wendel JF (1993) A rapid method for extraction of Cotton (Gossypium spp) genomic DNA suitable for RFLP or PCR analysis. Plant Mol Biol Rep 11:122–127. https://doi.org/10.1007/BF02670470
Puchooa D, Venkatasamy K (2005) A Protocol for the isolation of DNA from Protocol for the isolation of DNA from Trochetia boutoniana. Int J Agric Biol 07:82–85
Raclariu AC, Heinrich M, Ichim MC, de Boer H (2018) Benefits and limitations of DNA barcoding and metabarcoding in herbal product authentication. Phytochem Anal 29:123–128. https://doi.org/10.1002/pca.2732
Rao MN, Ramesha BT, Ravikanth G, Ganeshaiah KN, Shaanker RU (2007) Cross-species amplification of coconut microsatellite markers in rattans. Silvae Genet 56:282–286. https://doi.org/10.1515/sg-2007-0040
Seethapathy GS, Raclariu-Manolica AC, Anmarkrud JA, Wangensteen H, de Boer HJ (2019) DNA Metabarcoding authentication of ayurvedic herbal products on the European market raises concerns of quality and fidelity. Front Plant Sci 10:68. https://doi.org/10.3389/fpls.2019.00068
Urumarudappa SK, Gogna N, Newmaster SG, Venkatarangaiah K, Subramanyam R, Saroja SG, Gudasalamani R, Dorai K, Ramanan US (2016) DNA barcoding and NMR spectroscopy-based assessment of species adulteration in the raw herbal trade of Saraca asoca (Roxb.) Willd: an important medicinal plant. Int J Med 130:1457–1470. https://doi.org/10.1007/s00414-016-1436-y
Varma A, Padh H, Shrivastava N (2007) Plant genomic DNA isolation: an art or a science. Biotechnol J 2:386–392. https://doi.org/10.1002/biot.200600195
Weishing K, Nybom H, Pfenninger M, Wolff K, Meyer W (1994) DNA isolation and purification. In: DNA fingerprinting in plants and fungi. CRC Press, Boca Raton, Florida, pp 44–59
World Health Organization (2001) Legal status of traditional medicine and complementary/alternative medicine. World Health Organization, Geneva, pp 189–189
World Health Organization (2011) The world traditional medicines situation, in traditional medicines: global situation, issues and challenges. World Health Organization, Geneva, pp 1–14
Yang SS, Chu P, Lin YF, Chen A, Lin SH (2002) Aristolochic acid-induced Fanconi’s syndrome and nephropathy presenting as hypokalemic paralysis. Am J Kidney Dis 39:e14–e21. https://doi.org/10.1053/ajkd.2002.31425
Acknowledgements
The authors express their gratitude to the management of Marwadi University, Rajkot, Gujarat, for providing the necessary facilities for conducting the research work, and equally grateful to Dr. Gaurav Sanghvi, (Head of the Department, Microbiology) for his encouragement in carrying out the investigation.
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MI carried out the investigation, sample collection, methodology, data curation and analysis, writing of original draft; AD contributed to methodology, data curation and analysis; AKB conceptualization of the investigation, supervision, analyzed the results, correction and editing of the final draft.
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Ibrahim, M., Detroja, A. & Bishoyi, A.K. A rapid, efficient and cost-effective DNA isolation protocol for various herbal products which is appropriate for different downstream genomics applications. Braz. J. Bot 46, 873–880 (2023). https://doi.org/10.1007/s40415-023-00923-7
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DOI: https://doi.org/10.1007/s40415-023-00923-7