M.E. Levine, J.A. Suarez, S. Brandhorst, P. Balasubramanian, C.-W. Cheng, F. Madia, L. Fontana, M.G. Mirisola, J. Guevara-Aguirre, J. Wan, Low protein intake is associated with a major reduction in IGF-1, cancer, and overall mortality in the 65 and younger but not older population. Cell. Metab. 19, 407 (2014)
Article
Google Scholar
S.T. Hess, T.P. Girirajan, M.D. Mason, Ultra-high resolution imaging by fluorescence photoactivation localization microscopy. Biophys. J. 91, 4258 (2006)
Article
ADS
Google Scholar
M.J. Rust, M. Bates, X. Zhuang, Stochastic optical reconstruction microscopy (STORM) provides sub-diffraction-limit image resolution. Nat. Methods. 3, 793 (2006)
Article
Google Scholar
M.G. Gustafsson, Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy. J. Microsc. 198, 82 (2000)
Article
Google Scholar
S.W. Hell, J. Wichmann, Breaking the diffraction resolution limit by stimulated emission: stimulated-emission-depletion fluorescence microscopy. Opt. Lett. 19, 780 (1994)
Article
ADS
Google Scholar
A.H. Voie, D. Burns, F. Spelman, Orthogonal-plane fluorescence optical sectioning: Three-dimensional imaging of macroscopic biological specimens. J. Microsc. 170, 229 (1993)
Article
Google Scholar
J. Dekker, K. Rippe, M. Dekker, N. Kleckner, Capturing chromosome conformation. Science 295, 1306 (2002)
Article
ADS
Google Scholar
M. Simonis, P. Klous, E. Splinter, Y. Moshkin, R. Willemsen, E. De Wit, B. Van Steensel, W. De Laat, Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture–on-chip (4C). Nat. Genet. 38, 1348 (2006)
Article
Google Scholar
J.D. Lieb, X. Liu, D. Botstein, P.O. Brown, Promoter-specific binding of Rap1 revealed by genome-wide maps of protein–DNA association. Nat. Genet. 28, 327 (2001)
Article
Google Scholar
J. Kazakevych, S. Sayols, B. Messner, C. Krienke, N. Soshnikova, Dynamic changes in chromatin states during specification and differentiation of adult intestinal stem cells. Nucleic Acids Res. 45, 5770 (2017)
Article
Google Scholar
M. Lisby, U.H. Mortensen, R. Rothstein, Colocalization of multiple DNA double-strand breaks at a single Rad52 repair centre. Nat. Cell Biol. 5, 572 (2003)
Article
Google Scholar
B. Huang, M. Bates, X. Zhuang, Super-resolution fluorescence microscopy. Annu. Rev. Biochem. 78, 993 (2009)
Article
Google Scholar
D.M. Shcherbakova, A.A. Shemetov, A.A. Kaberniuk, V.V. Verkhusha, Natural photoreceptors as a source of fluorescent proteins, biosensors, and optogenetic tools. Annu. Rev. Biochem. 84, 519 (2015)
Article
Google Scholar
I.I. Cisse, I. Izeddin, S.Z. Causse, L. Boudarene, A. Senecal, L. Muresan, C. Dugast-Darzacq, B. Hajj, M. Dahan, X. Darzacq, Real-time dynamics of RNA polymerase II clustering in live human cells. Science 341, 664 (2013)
Article
ADS
Google Scholar
W.-K. Cho, J.-H. Spille, M. Hecht, C. Lee, C. Li, V. Grube, I.I. Cisse, Mediator and RNA polymerase II clusters associate in transcription-dependent condensates. Science 361, 412 (2018)
Article
ADS
Google Scholar
J. Xu, H. Ma, J. Jin, S. Uttam, R. Fu, Y. Huang, Y. Liu, Super-resolution imaging of higher-order chromatin structures at different epigenomic states in single mammalian cells. Cell Rep. 24, 873 (2018)
Article
Google Scholar
C. Xia, H.P. Babcock, J.R. Moffitt, X. Zhuang, Multiplexed detection of RNA using MERFISH and branched DNA amplification. Sci. Rep. 9, 1 (2019)
Article
Google Scholar
M.G. Gustafsson, L. Shao, P.M. Carlton, C.R. Wang, I.N. Golubovskaya, W.Z. Cande, D.A. Agard, J.W. Sedat, Three-dimensional resolution doubling in wide-field fluorescence microscopy by structured illumination. Biophys. J. 94, 4957 (2008)
Article
Google Scholar
J. Chojnacki, C. Eggeling, Super-resolution fluorescence microscopy studies of human immunodeficiency virus. Retrovirology 15, 41 (2018)
Article
Google Scholar
B.-C. Chen, W.R. Legant, K. Wang, L. Shao, D.E. Milkie, M.W. Davidson, C. Janetopoulos, X.S. Wu, J.A. Hammer, Z. Liu, Lattice light-sheet microscopy: imaging molecules to embryos at high spatiotemporal resolution. Science 346, 1257998 (2014)
Article
Google Scholar
W.-K. Cho, N. Jayanth, B.P. English, T. Inoue, J.O. Andrews, W. Conway, J.B. Grimm, J.-H. Spille, L.D. Lavis, T. Lionnet, RNA Polymerase II cluster dynamics predict mRNA output in living cells. Elife 5, e13617 (2016)
Article
Google Scholar
B.R. Sabari, A. Dall’Agnese, A. Boija, I.A. Klein, E.L. Coffey, K. Shrinivas, B.J. Abraham, N.M. Hannett, A.V. Zamudio, J.C. Manteiga, Coactivator condensation at super-enhancers links phase separation and gene control. Science 361, eaar3958 (2018)
Article
Google Scholar
Z. Liu, W.R. Legant, B.-C. Chen, L. Li, J.B. Grimm, L.D. Lavis, E. Betzig, R. Tjian, 3D imaging of Sox2 enhancer clusters in embryonic stem cells. Elife 3, e04236 (2014)
Article
Google Scholar
P. Filippakopoulos, J. Qi, S. Picaud, Y. Shen, W.B. Smith, O. Fedorov, E.M. Morse, T. Keates, T.T. Hickman, I. Felletar, Selective inhibition of BET bromodomains. Nature 468, 1067 (2010)
Article
ADS
Google Scholar
J. Lovén, H.A. Hoke, C.Y. Lin, A. Lau, D.A. Orlando, C.R. Vakoc, J.E. Bradner, T.I. Lee, R.A. Young, Selective inhibition of tumor oncogenes by disruption of super-enhancers. Cell 153, 320 (2013)
Article
Google Scholar
E. Gomes, J. Shorter, The molecular language of membraneless organelles. J. Biol. Chem. 294, 7115 (2019)
Article
Google Scholar
A.A. Hyman, C.A. Weber, F. Jülicher, Liquid-liquid phase separation in biology. Annu. Rev. Cell Dev. Biol. 30, 39 (2014)
Article
Google Scholar
T.K. Meyvis, S.C. De Smedt, P. Van Oostveldt, J. Demeester, Fluorescence recovery after photobleaching: a versatile tool for mobility and interaction measurements in pharmaceutical research. Pharm. Res. 16, 1153 (1999)
Article
Google Scholar
J. Dekker, L. Mirny, The 3D genome as moderator of chromosomal communication. Cell 164, 1110 (2016)
Article
Google Scholar
J.R. Dixon, S. Selvaraj, F. Yue, A. Kim, Y. Li, Y. Shen, M. Hu, J.S. Liu, B. Ren, Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 485, 376 (2012)
Article
ADS
Google Scholar
A.S. Hansen, I. Pustova, C. Cattoglio, R. Tjian, X. Darzacq, CTCF and cohesin regulate chromatin loop stability with distinct dynamics. Elife 6, e25776 (2017)
Article
Google Scholar
S.S. Rao, M.H. Huntley, N.C. Durand, E.K. Stamenova, I.D. Bochkov, J.T. Robinson, A.L. Sanborn, I. Machol, A.D. Omer, E.S. Lander, A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell 159, 1665 (2014)
Article
Google Scholar
A.D. Schmitt, M. Hu, I. Jung, Z. Xu, Y. Qiu, C.L. Tan, Y. Li, S. Lin, Y. Lin, C.L. Barr, A compendium of chromatin contact maps reveals spatially active regions in the human genome. Cell Rep 17, 2042 (2016)
Article
Google Scholar