Skip to main content

Advertisement

Log in

Resistance detection and re-treatment options in hepatitis C virus-related chronic liver diseases after DAA-treatment failure

  • Review
  • Published:
Infection Aims and scope Submit manuscript

Abstract

Background

Introduced in 2013–2014, the second- and third-wave directly acting antivirals (DAAs) have strongly enhanced the efficacy and tolerability of anti-HCV treatment, with a sustained virological response (SVR) in 90–95% of cases treated. The aim of this paper was to focus on the type and prevalence of viral strains with a reduced sensitivity to DAAs and on treatment choices for DAA-experienced patients.

Methods

The Medline was searched for “HCV infection”, “HCV treatment”, “Directly acting antivirals”,“HCV resistance”.

Results

Most patients who did not achieve an SVR have been found to be infected with HCV mutant strains with a reduced susceptibility to these drugs. These mutants occur frequently in the NS5A region, with a moderate frequency in the NS3/4A regions and rarely in the NS5B region. Treatment-induced mutants resistant to NS5A DAAs persist for years after treatment discontinuation, whereas those resistant to the NS3 DAAs have a shorter duration.

Conclusions

Patients who have failed HCV treatment with DAA agents have several re-treatment options, but re-treatment selection may be intricate and resistance testing is recommended to optimize this choice. It is, therefore, important to bear in mind that the correct determination of HCV genotype and subtype and the identification of RASs are essential elements for choosing the optimal re-treatment. It is supposed that it is useful to give readers some other suggestions regarding therapeutic reprocessing.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

References

  1. Poynard T, Ratziu V, Benmanov Y, Di Martino V, Bedossa P, Opolon P. Fibrosis in patients with chronic hepatitis C: detection and significance. Semin Liver Dis. 2000;20:47–55.

    Article  CAS  Google Scholar 

  2. Poynard T, Bedossa P, Opolon P. Natural history of liver fibrosis progression in patients with chronic hepatitis C. Lancet. 1997;349:825–32.

    Article  CAS  Google Scholar 

  3. Alter HJ, Seeff LB. Recovery, persistence, and sequelae in hepatitis C virus infection: a perspective on long-term outcome. Semin Liver Dis. 2000;20:17–35.

    Article  CAS  Google Scholar 

  4. Coppola N, Zampino R, Bellini G, Macera M, Marrone A, Pisaturo M, Boemio A, Nobili B, Pasquale G, Maione S, Adinolfi LE, Perrone L, Sagnelli E, Miraglia Del Giudice E, Rossi F. Association between a polymorphism in cannabinoid receptor 2 and severe necroinflammation in patients with chronic hepatitis C. Clin Gastroenterol Hepatol. 2014;12:334–40. https://doi.org/10.1016/j.cgh.2013.05.008.

    Article  CAS  PubMed  Google Scholar 

  5. Shepard CW, Finelli L, Alter MJ. Global epidemiology of hepatitis C virus infection. Lancet Infect Dis. 2005;5:558–67.

    Article  Google Scholar 

  6. Lauer GM, Walker BD. Hepatitis C virus infection. N Engl J Med. 2001;345:41–52.

    Article  CAS  Google Scholar 

  7. Zaltron S, Spinetti A, Biasi L, Baiguera C, Castelli F. Chronic HCV infection: epidemiological and clinical relevance. BMC Infect Dis. 2012;12:S2. https://doi.org/10.1186/1471-2334-12-S2-S2.

    Article  PubMed  PubMed Central  Google Scholar 

  8. Mohd Hanafiah K, Groeger J, Flaxman AD, Wiersma ST. Global epidemiology of hepatitis C virus infection: new estimates of age-specific antibody to HCV seroprevalence. Hepatology. 2013;57:1333–42. https://doi.org/10.1002/hep.26141.

    Article  Google Scholar 

  9. Centers for Disease Control and Prevention. Surveillance for acute viral hepatitis United States. 56th ed. Atlanta: Centers for Disease Control and Prevention; 2005. p. 1–24.

    Google Scholar 

  10. Santantonio T, Medda E, Ferrari C, Fabris P, Cariti G, Massari M, Babudieri S, Toti M, Francavilla R, Ancarani F, Antonucci G, Scotto G, Di Marco V, Pastore G, Stroffolini T. Risk factors and outcome among a large patient cohort with community-acquired acute hepatitis C in Italy. Clin Infect Dis. 2006;43:1154–9. https://doi.org/10.1086/507640.

    Article  CAS  PubMed  Google Scholar 

  11. Corey KE, Ross AS, Wurcel A, Schulze Zur Wiesch J, Kim AY, Lauer GM, Chung RT. Outcomes and treatment of acute hepatitis C virus infection in a United States population. Clin Gastroenterol Hepatol. 2006;4:1278–82. https://doi.org/10.1016/j.cgh.2006.06.026.

    Article  PubMed  PubMed Central  Google Scholar 

  12. Esteban JI, Sauleda S, Quer J. The changing epidemiology of hepatitis C virus infection in Europe. J Hepatol. 2008;48:148–62.

    Article  Google Scholar 

  13. Martinez-Bauer E, Forns X, Armelles M, Planas R, Solà R, Vergara M, Fàbregas S, Vega R, Salmerón J, Diago M, Sánchez-Tapias JM, Bruguera M, Spanish Acute HCV Study Group. Hospital admission is a relevant source of hepatitis C virus acquisition in Spain. J Hepatol. 2008;48:20–7. https://doi.org/10.1016/j.jhep.2007.07.031.

    Article  PubMed  Google Scholar 

  14. Benova L, Mohamoud YA, Calvert C, Abu-Raddad LJ. Vertical transmission of hepatitis C virus: systematic review and meta-analysis. Clin Infect Dis. 2014;59:765–73. https://doi.org/10.1093/cid/ciu447.

    Article  Google Scholar 

  15. Kiyosawa K, Sodeyama T, Tanaka E, Nakano Y, Furuta S, Nishioka K, Purcell RH, Alter HJ. Hepatitis C in hospital employees with needlestick injuries. Ann Intern Med. 1991;115:367–9.

    Article  CAS  Google Scholar 

  16. Choo QL, Kuo G, Weiner AJ, Overby LR, Bradley DW, Houghton M. Houghton Isolation of a cDNA clone derived from a blood-borne non-A, non-B viral-hepatitis genome. Science. 1989;244:359–62.

    Article  CAS  Google Scholar 

  17. Ruta S, Cernescu C. Injecting drug use: a vector for the introduction of new hepatitis C virus genotypes. World J Gastroenterol. 2015;21:10811–23. https://doi.org/10.3748/wjg.v21.i38.10811.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  18. Hijikata M, Mizushima H, Akagi T, Mori S, Kakiuchi N, Kato N, Tanaka T, Kimura K, Shimotohno K. Two distinct proteinase activities required for the processing of a putative nonstructural precursor protein of hepatitis C virus. J Virol. 1993;67:4665–75.

    CAS  PubMed  PubMed Central  Google Scholar 

  19. Bartenschlager R. Hepatitis C virus replicons: potential role for drug development. Nat Rev Drug Discov. 2002;1:911–6. https://doi.org/10.1038/nrd942.

    Article  CAS  PubMed  Google Scholar 

  20. Koch JO, Bartenschlager R. Modulation of hepatitis C virus NS5A hyperphosphorylation by nonstructural proteins NS3, NS4A, and NS4B. J Virol. 1999;73:7138–46.

    CAS  PubMed  Google Scholar 

  21. Hanoulle X, Verdegem D, Badillo A, Wieruszeski JM, Penin F, Lippens G. Domain 3 of non-structural protein 5A from hepatitis C virus is natively unfolded. Biochem Biophys Res Commun. 2009;381:634–8.

    Article  CAS  Google Scholar 

  22. Smith DB, Bukh J, Kuiken C, Muerhoff AS, Rice CM, Stapleton JT, Simmonds P. Expanded classification of hepatitis C virus into 7 genotypes and 67 subtypes: updated criteria and genotype assignment web resource. Hepatology. 2014;59:318–27.

    Article  Google Scholar 

  23. Gower E, Estes C, Blach S, Razavi-Shearer K, Razavi H. Global epidemiology and genotype distribution of the hepatitis C virus infection. J Hepatol. 2014;61:45–57.

    Article  Google Scholar 

  24. Ghany MG, Strader DB, Thomas DL, Seeff LB, American Association for the Study of Liver Diseases. Diagnosis, management, and treatment of hepatitis C: an update. Hepatology. 2009;49:1335–74. https://doi.org/10.1002/hep.22759.

    Article  CAS  PubMed  Google Scholar 

  25. Coppola N, Martini S, Pisaturo M, Sagnelli C, Filippini P, Sagnelli E. Treatment of chronic hepatitis C in patients with HIV/HCV coinfection. World J Virol. 2015;4:1–12. https://doi.org/10.5501/wjv.v4.i1.1 (review).

    Article  PubMed  PubMed Central  Google Scholar 

  26. Coppola N, Pisaturo M, Zampino R, Macera M, Sagnelli C, Sagnelli E. Hepatitis C virus markers in infection by hepatitis C virus: in the era of directly acting antivirals. World J Gastroenterol. 2015;21:10749–59. https://doi.org/10.3748/wjg.v21.i38.10749.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  27. Coppola N, Pisaturo M, Tonziello G, Sagnelli C, Sagnelli E, Angelillo IF. Efficacy of pegylated interferon α-2a and α-2b in patients with genotype 1 chronic hepatitis C: a meta-analysis. BMC Infect Dis. 2012;12:357. https://doi.org/10.1186/1471-2334-12-357.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  28. Coppola N, Pisaturo M, Sagnelli C, Sagnelli E, Angelillo IF. Peg-interferon plus ribavirin with or without boceprevir or telaprevir for HCV genotype 1: a meta-analysis on the role of response predictors. PLoS One. 2014;9:e94542. https://doi.org/10.1371/journal.pone.0094542 (eCollection 2014).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  29. Italian Association for the Study of the Liver; Italian Society of Infectious, Tropical Diseases; Italian Society for the Study of Sexually Transmitted Diseases. Practice guidelines for the treatment of hepatitis C: recommendations from an AISF/SIMIT/SIMAST Expert Opinion Meeting. Dig Liver Dis. 2010;42:81–91. https://doi.org/10.1016/j.dld.2009.08.001.

    Article  Google Scholar 

  30. European Association of the Study of the Liver. European Association of the Study of the Liver hepatitis C virus clinical practice guidelines. Liver Int. 2011;32(Suppl 1):2–8. https://doi.org/10.1111/j.1478-3231.2011.02703.x.

    Article  CAS  Google Scholar 

  31. van der Meer AJ, Veldt BJ, Feld JJ, Wedemeyer H, Dufour JF, Lammert F, Duarte-Rojo A, Heathcote EJ, Manns MP, Kuske L, Zeuzem S, Hofmann WP, de Knegt RJ, Hansen BE, Janssen HL. Association between sustained virological response and all-cause mortality among patients with chronic hepatitis C and advanced hepatic fibrosis. JAMA. 2012;308:2584–93.

    Article  Google Scholar 

  32. Deterding K, Hoener zu Siederdissen C, Port K, Solbach P, Sollik L, Kirschner J, Mix C, Cornberg J, Worzala D, Mix H, Manns MP, Cornberg M, Wedemeyer H. Improvement of liver function parameters in advanced HCV associated liver cirrhosis by IFN-free antiviral therapies. Aliment Pharmacol Ther. 2015;42:889–901.

    Article  CAS  Google Scholar 

  33. AASLD-IDSA HCV Guidance. Recommendations for testing, managing, and treating hepatitis C. https://www.hcvguidelines.org. Accessed 1 June 2018.

  34. EASL Recommendations on Treatment of Hepatitis C. Hepatitis C guidance: AASLD-IDSA recommendations for testing, managing, and treating hepatitis C. J Hepatol 2017. 2016;66:153–94.

    Google Scholar 

  35. Coppola N, De Pascalis S, Messina V, Di Caprio G, Martini S, de Stefano G, Starace M, Stornaiuolo G, Stanzione M, Ascione T, Minichini C, Sangiovanni V, Zampino R, Calò F, Rinaldi L, Persico M, Federico A, Buonomo AR, Borgia G, Gaeta GB, Filippini P, Gentile I. ITPase activity modulates the severity of anaemia in HCV-related cirrhosis treated with ribavirin-containing interferon-free regimens. Antivirus Ther. 2017;22:551–8. https://doi.org/10.3851/IMP3134.

    Article  Google Scholar 

  36. Caudai C, Materazzi A, Saladini F, Di Giambenedetto S, Torti C, Ricciardi B, Rossetti B, Almi P, De Luca A, Zazzi M. Natural NS5A inhibitor resistance associated substitutions in hepatitis C virus genotype 1 infected patients from Italy. Clin Microbiol Infect. 2017. https://doi.org/10.1016/j.cmi.2017.08.003.

    Article  PubMed  Google Scholar 

  37. Zeuzem S, Mizokami M, Pianko S, Mangia A, Han KH, Martin R, et al. NS5A resistance-associated substitutions inpatients with genotype 1 hepatitis C virus: prevalence and effect on treatment outcome. J Hepatol. 2017;66:910–918.

    Article  CAS  Google Scholar 

  38. AASLD-IDSA. 2018. Recommendations for testing, managing, and treating hepatitis C. http://www.hcvguidelines.org. Accessed 24 Oct 2017.

  39. Sorbo MC, Cento V, Di Maio VC, Howe AYM, Garcia F, Perno CF, Ceccherini-Silberstein F. Hepatitis C virus drug resistance associated substitutions and their clinical relevance: update 2018. Drug Resist Update. 2018;37:17–39. https://doi.org/10.1016/j.drup.2018.01.004 (Epub 2018 Feb 21. Review. Erratum in: Drug Resist Update).

    Article  Google Scholar 

  40. Wei B, Kang J, Kibukawa M, Chen L, Qiu P, Lahser F, Marton M, Levitan D. Development and validation of a template-independent next-generation sequencing assay for detecting low-level resistance-associated variants of hepatitis C virus. J Mol Diagn. 2016;18(5):643–656. https://doi.org/10.1016/j.jmoldx.2016.04.001. (Epub 2016 Jul 7).

    Article  CAS  PubMed  Google Scholar 

  41. Wang W, Ren Y, Lu Y, Xu Y, Crosby SD, Di Bisceglie AM, Fan X. Template-dependent multiple displacement amplification for profiling human circulating RNA. Biotechniques. 2017;63(1):21–27. https://doi.org/10.2144/000114566.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  42. Paolucci S, Fiorina L, Piralla A, Gulminetti R, Stefano Novati S, Giorgio Barbarini G, Paolo Sacchi P, Mrta Gatti M, Luca Dossena L, Baldanti F. Naturally occurring mutations to HCV protease inhibitors in treatment-naive patients. Virol J. 2012;9:245. https://doi.org/10.1186/1743-422X-9-245.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  43. Costantino A, Spada E, Equestre M, Bruni R, Tritarelli E, Coppola N, Sagnelli C, Sagnelli E, Ciccaglione AR. Naturally occurring mutations associated with resistance to HCV NS5B polymerase and NS3 protease inhibitors in treatment-naive patients with chronic hepatitis C. Virol J. 2015;12:186. https://doi.org/10.1186/s12985-015-0414-1.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  44. Sarrazin C, Zeuzem S. Resistance to direct antiviral agents in patients with hepatitis C virus infection. Gastroenterology. 2010;138:447–62. https://doi.org/10.1053/j.gastro.2009.11.055.

    Article  CAS  PubMed  Google Scholar 

  45. Sullivan JC, De Meyer S, Bartels DJ, Dierynck I, Zhang EZ, Spanks J, Tigges AM, Ghys A, Dorrian J, Adda N, Martin EC, Beumont M, Jacobson IM, Sherman KE, Zeuzem S, Picchio G, Kieffer TL. Evolution of treatment-emergent resistant variants in telaprevir phase 3 clinical trials. Clin Infect Dis. 2013;57:221–9. https://doi.org/10.1093/cid/cit226.

    Article  CAS  PubMed  Google Scholar 

  46. US Food and Drug Administration. Simeprevir product insert. 2013. http://www.accessdata.fda.gov/drugsatfda_docs/label/2013/205123s001lbl.pdf. Accessed 24 May 2018.

  47. McPhee F, Friborg J, Levine S, Chen C, Falk P, Yu F, Hernandez D, Lee MS, Chaniewski S, Sheaffer AK, Pasquinelli C. Resistance analysis of the hepatitis C virus NS3 protease inhibitor asunaprevir. Antimicrob Agents Chemother. 2012;56:3670–81. https://doi.org/10.1128/AAC.00308-12.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  48. Everson GT, Sims KD, Rodriguez-Torres M, Hézode C, Lawitz E, Bourlière M, Loustaud-Ratti V, Rustgi V, Schwartz H, Tatum H, Marcellin P, Pol S, Thuluvath PJ, Eley T, Wang X, Huang SP, McPhee F, Wind-Rotolo M, Chung E, Pasquinelli C, Grasela DM, Gardiner DF. Efficacy of an interferon- and ribavirin-free regimen of daclatasvir, asunaprevir, and BMS-791325 in treatment-naive patients with HCV genotype 1 infection. Gastroenterology. 2014;146:420–9. https://doi.org/10.1053/j.gastro.2013.10.057.

    Article  CAS  PubMed  Google Scholar 

  49. Zeuzem Jacobson IM, Baykal T, Marinho RT, Poordad F, Bourlière M, Sulkowski MS, Wedemeyer H, Tam E, Desmond P, Jensen DM, Di Bisceglie AM, Varunok P, Hassanein T, Xiong J, Pilot-Matias T, DaSilva-Tillmann B, Larsen L, Podsadecki T, Bernstein B. Retreatment of HCV with ABT-450/r-ombitasvir and dasabuvir with ribavirin. N Engl J Med. 2014;370:1604–14. https://doi.org/10.1056/NEJMoa1401561.

    Article  CAS  PubMed  Google Scholar 

  50. Zeuzem S, Ghalib R, Reddy KR, Pockros PJ, Ben Ari Z, Zhao Y, Brown DD, Wan S, DiNubile MJ, Nguyen BY, Robertson MN, Wahl J, Barr E, Butterton JR. Grazoprevir-elbasvir combination therapy for treatment-naive cirrhotic and noncirrhotic patients with chronic hepatitis C virus genotype 1, 4, or 6 infection: a randomized trial. Ann Intern Med. 2015;163:1–13. https://doi.org/10.7326/M15-0785.

    Article  PubMed  Google Scholar 

  51. Barnard RJ, McHale CM, Newhard W, Cheney CA, Graham DJ, Himmelberger AL, Strizki J, Hwang PM, Rivera AA, Reeves JD, Nickle D, Dinubile MJ, Hazuda DJ, Mobashery N. Emergence of resistance-associated variants after failed triple therapy with vaniprevir in treatment- experienced non-cirrhotic patients with hepatitis C-genotype 1 infection: a population and clonal analysis. Virology. 2013;443:278–84. https://doi.org/10.1016/j.virol.2013.05.013.

    Article  CAS  PubMed  Google Scholar 

  52. Lawitz E, Sulkowski M, Jacobson I, Kraft WK, Maliakkal B, Al-Ibrahim M, Gordon SC, Kwo P, Rockstroh JK, Panorchan P, Miller M, Caro L, Barnard R, Hwang PM, Gress J, Quirk E, Mobashery N. Characterization of vaniprevir, a hepatitis C virus NS3/4A protease inhibitor, in patients with HCV genotype 1 infection: safety, antiviral activity, resistance, and pharmacokinetics. Antivir Res. 2013;99:214–20. https://doi.org/10.1016/j.antiviral.2013.05.015.

    Article  CAS  PubMed  Google Scholar 

  53. Poordad F. High efficacy of ABT-493 and ABT-530 in HCV genotype- 1 infected patients who have failed direct-acting antiviral-containing regimens: the MAGELLAN-I study [Abstract SAT-157]. In: The International Liver CongressTM EASL—European Association for the Study of the Liver. Barcelona, Spain. Journal of Hepatology; 2016. p. S768.

  54. Ng T. Analysis of HCV Genotype 2 and 3 variants in patients treated with combination therapy of next generation HCV direct-acting antiviral agents ABT-493 and ABT-530 [Abstract THU-240]. In: The International liver congress TMEASL—European Association for the Study of the Liver. Barcelona. Journal of Hepatology; 2016. p. S409.

  55. Lawitz E, Yang JC, Stamm LM, Taylor JG, Cheng G, Brainard DM, Miller MD, Mo H, Dvory-Sobol H. Characterization of HCV resistance from a 3-day monotherapy study of voxilaprevir, a novel pangenotypic NS3/4A protease inhibitor. Antivir Ther. 2017. https://doi.org/10.3851/IMP3202.

    Article  Google Scholar 

  56. Dore GJ, Lawitz E, Hézode C, Shafran SD, Ramji A, Tatum HA, Taliani G, Tran A, Brunetto MR, Zaltron S, Strasser SI, Weis N, Ghesquiere W, Lee SS, Larrey D, Pol S, Harley H, George J, Fung SK, de Lédinghen V, Hagens P, McPhee F, Hernandez D, Cohen D, Cooney E, Noviello S, Hughes EA. Daclatasvir plus peginterferon and ribavirin is non-inferior to peginterferon and ribavirin alone, and reduces duration of treatment for HCV genotype 2 or 3 infection. Gastroenterology 2015;148:355–66.e1. https://doi.org/10.1053/j.gastro.2014.10.007.

    Article  CAS  PubMed  Google Scholar 

  57. Jensen D, Sherman KE, Hézode C, Pol S, Zeuzem S, de Ledinghen V, Tran A, Elkhashab M, Younes ZH, Kugelmas M, Mauss S, Everson G, Luketic V, Vierling J, Serfaty L, Brunetto M, Heo J, Bernstein D, McPhee F, Hennicken D, Mendez P, Hughes E, Noviello S, HALLMARK-QUAD Study Team. Daclatasvir and asunaprevir plus peginterferon alfa and ribavirin in HCV genotype 1 or 4 non-responders. J Hepatol. 2015;63:30–7. https://doi.org/10.1016/j.jhep.2015.02.018.

    Article  CAS  PubMed  Google Scholar 

  58. Nelson DR, Cooper JN, Lalezari JP, Lawitz E, Pockros PJ, Gitlin N, Freilich BF, Younes ZH, Harlan W, Ghalib R, Oguchi G, Thuluvath PJ, Ortiz-Lasanta G, Rabinovitz M, Bernstein D, Bennett M, Hawkins T, Ravendhran N, Sheikh AM, Varunok P, Kowdley KV, Hennicken D, McPhee F, Rana K, Hughes EA. ALLY-3 Study Team. All-oral 12-week treatment with daclatasvir plus sofosbuvir in patients with hepatitis C virus genotype 3 infection: ALLY-3 phase III study. Hepatology. 2015;61:1127–35. https://doi.org/10.1002/hep.27726.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  59. Lawitz EJ, Gruener D, Hill JM, Marbury T, Moorehead L, Mathias A, Cheng G, Link JO, Wong KA, Mo H, McHutchison JG, Brainard DM. A phase 1, randomized, placebo-controlled, 3-day, dose-ranging study of GS-5885, an NS5A inhibitor, in patients with genotype 1 hepatitis C. J Hepatol. 2012;57:24–31. https://doi.org/10.1016/j.jhep.2011.12.029.

    Article  CAS  PubMed  Google Scholar 

  60. Afdhal NH, Zeuzem S, Kwo P, Chojkier M, Gitlin N, Puoti M, Romero-Gomez M, Zarski JP, Agarwal K, Buggisch P, Foster GR, Bräu N, Buti M, Jacobson IM, Subramanian GM, Ding X, Mo H, Yang JC, Pang PS, Symonds WT, McHutchison JG, Muir AJ, Mangia A, Marcellin P, ION-1 Investigators. Ledipasvir and sofosbuvir for untreated HCV genotype 1 infection. N Engl J Med. 2014;370:1889–98. https://doi.org/10.1056/NEJMoa1402454.

    Article  CAS  PubMed  Google Scholar 

  61. Krishnan P, Beyer J, Mistry N, Koev G, Reisch T, DeGoey D, Kati W, Campbell A, Williams L, Xie W, Setze C, Molla A, Collins C, Pilot-Matias T. In vitro and in vivo antiviral activity and resistance profile of ombitasvir, an inhibitor of hepatitis C virus NS5A. Antimicrob Agents Chemother. 2015;59:979–87. https://doi.org/10.1128/AAC.04226-14.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  62. Liu R, Curry S, McMonagle P, Yeh WW, Ludmerer SW, Jumes PA, Marshall WL, Kong S, Ingravallo P, Black S, Pak I, DiNubile MJ, Howe AY. Susceptibilities of genotype 1a, 1b, and 3 hepatitis C virus variants to the NS5A inhibitor elbasvir. Antimicrob Agents Chemother. 2015;59:6922–29. https://doi.org/10.1128/AAC.01390-15.

    Article  CAS  Google Scholar 

  63. Lawitz EJ, Dvory-Sobol H, Doehle BP, Worth AS, McNally J, Brainard DM, Link JO, Miller M, Mo H. Clinical resistance to velpatasvir (GS-5816), a novel pan-genotypic inhibitor of the hepatitis C virus NS5A protein. Antimicrob Agents Chemother. 2016;60:5368–78. https://doi.org/10.1128/AAC.00763-16.

    Article  CAS  Google Scholar 

  64. Feld JJ, Jacobson IM, Hézode C, Asselah T, Ruane PJ, Gruener N, Abergel A, Mangia A, Lai CL, Chan HL, Mazzotta F, Moreno C, Yoshida E, Shafran SD, Towner WJ, Tran TT, McNally J, Osinusi A, Svarovskaia E, Zhu Y, Brainard DM, McHutchison JG, Agarwal K, Zeuzem S, ASTRAL-1 Investigators. Sofosbuvir and velpatasvir for HCV genotype 1, 2, 4, 5, and 6 infection. N Engl J Med. 2015;373:2599–607. https://doi.org/10.1056/NEJMoa1512610.

    Article  CAS  PubMed  Google Scholar 

  65. Poordad F, Landis CS, Asatryan A, Jackson DF 3rd, Ng TI, Fu B, Lin CW, Yao B, Kort J. High antiviral activity of NS5A inhibitor ABT-530 with paritaprevir/ritonavir and ribavirin against hepatitis C virus genotype 3 infection. Liver Int. 2016;36:1125–32. https://doi.org/10.1111/liv.13067.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  66. Wilfret DA, Walker J, Adkison KK, Jones LA, Lou Y, Gan J, Castellino S, Moseley CL, Horton J, de Serres M, Culp A, Goljer I, Spreen W. Safety, tolerability, pharmacokinetics, and antiviral activity of GSK2336805, an inhibitor of hepatitis C virus (HCV) NS5A, in healthy subjects and subjects chronically infected with HCV genotype 1. Antimicrob Agents Chemother. 2013;57:5037–44. https://doi.org/10.1128/AAC.00910-13.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  67. Muir A, Hill J. ACH-3102 A, Second Generation NS5A, Inhibitor, Demonstrates potent antiviral activity in patients with genotype 1A HCV infection despite the presence of baseline NS5A-resistant variants [Abstract 876]. In: The international liver congress TMEASL—European association for the study of the liver; 2013. The Netherlands, Amsterdam: J Hepatol; 2013. p. S360.

  68. Heinrich B. Persistence of resistance-associated variants in hepatitis C virus (HCV) genotypes 1–4 infected subjects following 3-day samatasvir monotherapy. In: International workshop on antiviral drug resistance—meeting the global: antiviral therapy; 2014.

  69. Gane EJ. Nucleotide polymerase inhibitor sofosbuvir plus ribavirin for hepatitis C. N Engl J Med. 2013;368:34–44.

    Article  CAS  Google Scholar 

  70. Svarovskaia ES, Gane E, Dvory-Sobol H, Martin R, Doehle B, Hedskog C, Jacobson IM, Nelson DR, Lawitz E, Brainard DM, McHutchison JG, Miller MD, Mo H. L159F and V321A sofosbuvir-associated hepatitis C Virus NS5B substitutions. J Infect Dis. 2016;213:1240-7. https://doi.org/10.1093/infdis/jiv564.

    Article  CAS  PubMed  Google Scholar 

  71. Donaldson EF, Harrington PR, O’Rear JJ, Naeger LK. Clinical evidence and bioinformatics characterization of potential hepatitis C virus resistance pathways for sofosbuvir. Hepatology. 2014;61:56–65

    Google Scholar 

  72. Feld JJ, Kowdley KV, Coakley E, Sigal S, Nelson DR, Crawford D, Weiland O, Aguilar H, Xiong J, Pilot-Matias T, DaSilva-Tillmann B, Larsen L, Podsadecki T, Bernstein B. Treatment of HCV with ABT-450/r-ombitasvir and dasabuvir with ribavirin. N Engl J Med. 2014;370:1594–603. https://doi.org/10.1056/NEJMoa1315722.

    Article  CAS  PubMed  Google Scholar 

  73. Leroy V, Angus P, Bronowicki JP, Hezode C, Pianko S, Pol S, Stuart K, Tse E, McPhee F, Bhore R, Jimenez-Exposito MJ, Thompson AJ. Daclatasvir, sofosbuvir, and ribavirin for hepatitis C virus genotype 3 and advanced liver disease: a randomized phase III study (ALLY-3+). Hepatology. 2016;63:1430–41. https://doi.org/10.1002/hep.28473.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  74. Krishnan P, Tripathi R, Schnell G, Reisch T, Beyer J, Irvin M, Xie W, Larsen L, Cohen D, Podsadecki T, Pilot-Matias T, Collins C. Resistance analysis of baseline and treatment-emergent variants in hepatitis C virus genotype 1 in the AVIATOR study with paritaprevir-ritonavir, ombitasvir, and dasabuvir. Antimicrob Agents Chemother. 2015;59:5445–54. https://doi.org/10.1128/AAC.00998-15.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  75. Kwo P, Gitlin N, Nahass R, Bernstein D, Etzkorn K, Rojter S, Schiff E, Davis M, Ruane P, Younes Z, Kalmeijer R, Sinha R, Peeters M, Lenz O, Fevery B, De La Rosa G, Scott J. Witek J.Simeprevir plus sofosbuvir (12 and 8 weeks) in HCV genotype 1-infected patients without cirrhosis: OPTIMIST-1, a phase 3. Randomized study. Hepatology. 2016;64:370–80. https://doi.org/10.1002/hep.28467.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  76. Lawitz E, Matusow G, DeJesus E, Yoshida EM, Felizarta F, Ghalib R, Godofsky E, Herring RW, Poleynard G, Sheikh A, Tobias H, Kugelmas M, Kalmeijer R, Peeters M, Lenz O, Fevery B, De La Rosa G, Scott J, Sinha R, Witek J. Simeprevir plus sofosbuvir in patients with chronic hepatitis C virus genotype 1 infection and cirrhosis: a phase 3 study (OPTIMIST-2). Hepatology. 2015;64:360–9. https://doi.org/10.1002/hep.28422.

    Article  CAS  Google Scholar 

  77. Poordad F, Schiff ER, Vierling JM, Landis C, Fontana RJ, Yang R, McPhee F, Hughes EA, Noviello S, Swenson ES. Daclatasvir with sofosbuvir and ribavirin for hepatitis C virus infection with advanced cirrhosis or post-liver transplantation recurrence. Hepatology. 2016;63:1493–505. https://doi.org/10.1002/hep.28446.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  78. Pawlotsky JM. Hepatitis C Virus resistance to direct-acting antiviral drugs in interferon-free regimens. Gastroenterology. 2016;151:70–86.

    Article  CAS  Google Scholar 

  79. Starace M, Minichini C, De Pascalis S, Macera M, Occhiello L, Messina V, Sangiovanni V, Adinolfi LE, Claar E, Precone D, Stornaiuolo G, Stanzione M, Ascione T, Caroprese M, Zampino R, Parrilli G, Gentile I, Brancaccio G, Iovinella V, Martini S, Masarone M, Fontanella L, Masiello A, Sagnelli E, Punzi R, Salomone Megna A, Santoro R, Gaeta GB, Coppola N. Virological patterns of HCV patients with failure to interferon-free regimens. J Med Virol. 2018. https://doi.org/10.1002/jmv.25022.

    Article  PubMed  Google Scholar 

  80. Coppola N, Minichini C, Starace M, Sagnelli C, Sagnelli E. Clinical impact of the hepatitis C virus mutations in the era of directly acting antivirals. J Med Virol. 2016;88:1659–71. https://doi.org/10.1002/jmv.24527.

    Article  CAS  PubMed  Google Scholar 

  81. Loreta LA, Gaeta GB, Brunetto MR, Di Leo A, Iannone A, Santantonio TA, Giammario A, Raimondo G, Filomia R, Coppola C, Amoruso DC, Blanc P, Del Pin B, Chemello L, Cavalletto L, Morisco F, Donnarumma L, Rumi MG, Gasbarrini A, Siciliano M, Massari M, Corsini R, Coco B, Madonia S, Cannizzaro M, Zignego AL, Monti M, Russo FP, Zanetto A, Persico M, Masarone M, Villa E, Bernabucci V, Taliani G, Biliotti E, Chessa L, Pasetto MC, Andreone P, Margotti M, Brancaccio G, Ieluzzi D, Borgia G, Zappulo E, Calvaruso V, Petta S, Falzano L, Quaranta MG, Weimer LE, Rosato S, Vella S, Giannini EG. Incidence of DAA failure and the clinical impact of retreatment in real-life patients treated in the advanced stage of liver disease: interim evaluations from the PITER network. PLoS One. 2017;12:e0185728. https://doi.org/10.1371/journal.pone.0185728.

    Article  CAS  Google Scholar 

  82. Yoshimi S, Imamura M, Murakami E, Hiraga N, Tsuge M, Kawakami Y, Aikata H, Abe H, Hayes CN, Sasaki T, Ochi H, Chayama K. Long term persistence of NS5A inhibitor-resistant hepatitis C virus in patients who failed daclatasvir and asunaprevir therapy. J Med Virol. 2015;87:1913–20. https://doi.org/10.1002/jmv.24255.

    Article  CAS  PubMed  Google Scholar 

  83. Lawitz E, Flamm S, Yang JC, Shyam K, Pfeiffer RM. Retreatment of patients who failed 8 or 12 weeks of ledipasvir/sofosbuvir- based regimens with ledipasvir/sofosbuvir for 24 weeks. J Hepatol. 2015;62:S192.

    Article  Google Scholar 

  84. Gane EJ, Shiffman ML, Etzkorn K, Morelli G, Stedman C, Davis MN, Hinestrosa F. Sofosbuvir/velpatasvir in combination with ribavirin for 24 weeks is effective retreatment for patients who failed prior NS5A- containing DAA regimens: results of the retreatment study. J Hepatol. 2016;64:147.

    Article  Google Scholar 

  85. Sarrazin C, Dvory-Sobol H, Svarovskaia ES, Doehle BP, Pang PS, Chuang SM, Ma J, Ding X, Afdhal NH, Kowdley KV, Gane EJ, Lawitz E, Brainard DM, McHutchison JG, Miller MD, Mo H. Prevalence of resistance- associated substitutions in HCV NS5A, NS5B, or NS3 and outcomes of treatment with ledipasvir and sofosbuvir. Gastroenterology. 2016;151:501–12. https://doi.org/10.1053/j.gastro.2016.06.002.

    Article  CAS  PubMed  Google Scholar 

  86. Craxi A, Perno CF, Vigano M, Ceccherini-Silberstein F, Petta S. From current status to optimization of HCV treatment: recommendations from an expert panel. Dig Liver Dis. 2016;48:995–1005.

    Article  Google Scholar 

  87. Hézode C, Chevaliez S, Scoazec G, Soulier A, Varaut A, Bouvier-Alias M, Ruiz I, Roudot-Thoraval F, Mallat A, Féray C, Pawlotsky JM. Retreatment with sofosbuvir and simeprevir of patients with hepatitis C virus genotype 1 or 4 who previously failed a daclatasvir-containing regimen. Hepatology. 2016;63:1809–16. https://doi.org/10.1002/hep.28491.

    Article  CAS  PubMed  Google Scholar 

  88. Pianko S, Flamm SL, Shiffman ML, Kumar S, Strasser SI, Dore GJ, McNally J, Brainard DM, Han L, Doehle B, Mogalian E, McHutchison JG, Rabinovitz M, Towner WJ, Gane EJ, Stedman CA, Reddy KR, Roberts SK. Sofosbuvir plus velpatasvir combination therapy for treatment-experienced patients with genotype 1 or 3 hepatitis C virus infection: a randomized trial. Ann Intern Med. 2015;163:809–17. https://doi.org/10.7326/M15-1014.

    Article  PubMed  Google Scholar 

  89. Reddy KR, Bourlière M, Sulkowski M, Omata M, Zeuzem S, Feld JJ, Lawitz E, Marcellin P, Welzel TM, Hyland R, Ding X, Yang J, Knox S, Pang P, Dvory-Sobol H, Subramanian GM, Symonds W, McHutchison JG, Mangia A, Gane E, Mizokami M, Pol S, Afdhal N. Ledipasvir and sofosbuvir in patients with genotype 1 hepatitis C virus infection and compensated cirrhosis: an integrated safety and efficacy analysis. Hepatology. 2015;62:79–86. https://doi.org/10.1002/hep.27826.

    Article  CAS  PubMed  Google Scholar 

  90. Bourliere M, Gordon SC, Flamm SL, Cooper CL, Ramji A, Tong M, Ravendhran N, Vierling JM, Tran TT, Pianko S, Bansal MB, de Lédinghen V, Hyland RH, Stamm LM, Dvory-Sobol H, Svarovskaia E, Zhang J, Huang KC, Subramanian GM, Brainard DM, McHutchison JG, Verna EC, Buggisch P, Landis CS, Younes ZH, Curry MP, Strasser SI, Schiff ER, Reddy KR, Manns MP, Kowdley KV, Zeuzem S, POLARIS-1 and POLARIS-4 Investigators. Sofosbuvir, velpatasvir, and voxilaprevir for previously treated HCV infection. N Engl J Med. 2017;376:2134–46. https://doi.org/10.1056/NEJMoa1613512.

    Article  CAS  PubMed  Google Scholar 

  91. Poordad F, Pol S, Asatryan A, Buti M, Shaw D, Hézode C, Felizarta F, Reindollar RW, Gordon SC, Pianko S, Fried MW, Bernstein DE, Gallant J, Lin CW, Lei Y, Ng TI, Krishnan P, Kopecky-Bromberg S, Kort J, Mensa FJ. Glecaprevir/pibrentasvir in patients with hepatitis C virus genotype 1 or 4 and past direct-acting antiviral treatment failure. Hepatology. 2017. https://doi.org/10.1002/hep.29671.

    Article  PubMed  PubMed Central  Google Scholar 

  92. Poordad F, Felizarta F, Asatryan A, Sulkowski MS, Reindollar RW, Landis CS, Landis CS, Gordon SC, Flamm SL, Fried MW, Bernstein DE, Lin CW, Liu R, Lovell SS, Ng TI, Kort J, Mensa FJ. Glecaprevir and pibrentasvir for 12 weeks for hepatitis C virus genotype 1 infection and prior direct-acting antiviral treatment. Hepatology. 2017;66:389–97. https://doi.org/10.1002/hep.29081.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  93. Poordad F, Pol S, Asatryan A, Buti M, Shaw DR, Hezode C, Felizarta F, Reindollar RW, Gordon SC, Pianko S, Fried MW, Bernstein DE, Gallant J, Lin CW, Lei Y, Ng TI, Krishnan P, Kopecky-Bromberg S, Kort J, Mensa FJ. Glecapreir and pibrentasvir for 12 or 16 weeks in patients with chronic HCV genotype 1 or 4 and prior direct-acting antiviral treatment failure. Gastroenterology. 2017;152:1057. https://doi.org/10.1002/hep.29671.

    Article  CAS  Google Scholar 

  94. de Lédinghen V, Laforest C, Hézode C, Pol S, Renault A, Alric L, Larrey D, Métivier S, Tran A, Jézéquel C, Samuel D, Zoulim F, Tual C, Pailhé A, Gibowski S, Bourlière M, Bellissant E, Pawlotsky JM. Retreatment with sofosbuvir plus grazoprevir/elbasvir plus ribavirin of patients with hepatitis C virus genotype 1 or 4 who previously failed a NS5A or NS3-containing regimen. ANRS HC34 REVENGE. Clin Infect Dis. 2017. https://doi.org/10.1093/cid/cix916.

    Article  Google Scholar 

  95. Di Maio VC, Cento V, Lenci I, Aragri M, Rossi P, Barbaliscia S, Melis M, Verucchi G, Magni CF, Teti E, Bertoli A, Antonucci F, Bellocchi MC, Micheli V, Masetti C, Landonio S, Francioso S, Santopaolo F, Pellicelli AM, Calvaruso V, Gianserra L, Siciliano M, Romagnoli D, Cozzolongo R, Grieco A, Vecchiet J, Morisco F, Merli M, Brancaccio G, Di Biagio A, Loggi E, Mastroianni CM, Pace Palitti V, Tarquini P, Puoti M, Taliani G, Sarmati L, Picciotto A, Vullo V, Caporaso N, Paoloni M, Pasquazzi C, Rizzardini G, Parruti G, Craxì A, Babudieri S, Andreoni M, Angelico M, Perno CF, Ceccherini-Silberstein F, HCV Italian Resistance Network Study Group. Multiclass HCV resistance to direct-acting antiviral failure in real-life patients advocates for tailored second-line therapies. Liver Int. 2017;37:514–28. https://doi.org/10.1111/liv.13327.

    Article  CAS  PubMed  Google Scholar 

  96. Salerno F, Borzio M, Pedicino C, Simonetti R, Rossini A, Boccia S, Cacciola I, Burroughs AK, Manini MA, La Mura V, Angeli P, Bernardi M, Dalla Gasperina D, Dionigi E, Dibenedetto C, Arghittu M, AISF Investigators. The impact of infection by multidrug-resistant agents in patients with cirrhosis. A multicenter prospective study. Liver Int. 2017;37:71–9. https://doi.org/10.1111/liv.13195.

    Article  CAS  PubMed  Google Scholar 

  97. Manns M, Pol S, Jacobson IM, Marcellin P, Gordon SC, Peng CY, Chang TT, Everson GT, Heo J, Gerken G, Yoffe B, Towner WJ, Bourliere M, Metivier S, Chu CJ, Sievert W, Bronowicki JP, Thabut D, Lee YJ, Kao JH, McPhee F, Kopit J, Mendez P, Linaberry M, Hughes E, Noviello S, HALLMARK-DUAL Study Team. All-oral daclatasvir plus asunaprevir for hepatitis C virus genotype 1b: a multinational, phase 3, multicohort study. Lancet. 2014;384:1597–605.

    Article  CAS  Google Scholar 

  98. Kumad H, Suzuki Y, Ikeda K, Toyota J, Karino Y, Chayama K, Kawakami Y, Ido A, Yamamoto K, Takaguchi K, Izumi N, Koike K, Takehara T, Kawada N, Sata M, Miyagoshi H, Eley T, McPhee F, Damokosh A, Ishikawa H, Hughes E. Daclatasvir plus asunaprevir for chronic HCV genotype 1b infection. Hepatology. 2014;59:2083–91. https://doi.org/10.1002/hep.27113.

    Article  CAS  Google Scholar 

  99. Fevery B, Thys K, Van Eygen V, Verbinnen T, Van Rossem E, Buelens A, Aerssens J, Witek J, Picchio G, De Meyer S, Lenz O. Pre-existence and persistence of resistant minority hepatitis C virus variants in genotype 1-infected patients treated with simeprevir/peginterferon/ribavirin. Open Forum Infect Dis. 2016;3:ofw052. https://doi.org/10.1093/ofid/ofw052.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  100. Jiang M, Mani N, Lin C, Ardzinski A, Nelson M, Reagan D, Bartels D, Zhou Y, Nicolas O, Rao BG, Müh U, Hanzelka B, Tigges A, Rijnbrand R, Kieffer TL. In vitro phenotypic characterization of hepatitis C virus NS3 protease variants observed in clinical studies of telaprevir. Antimicrob Agents Chemother. 2013;57:6236–45. https://doi.org/10.1128/AAC.01578-13.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  101. Lagace L, White PW, Bousquet C, Dansereau N, Dô F, Llinas-Brunet M, Marquis M, Massariol MJ, Maurice R, Spickler C, Thibeault D, Triki I, Zhao S, Kukolj G. In vitro resistance profile of the hepatitis C virus NS3 protease inhibitor BI 201335. Antimicrob Agents Chemother. 2012;56:569–72. https://doi.org/10.1128/AAC.05166-11.

    Article  CAS  Google Scholar 

  102. Fridell RA, Qiu D, Valera L, Wang C, Rose RE, Gao M. Distinct functions of NS5A in hepatitis C virus RNA replication uncovered by studies with the NS5A inhibitor BMS-790052. J Virol. 2011;85:7312–20.

    Article  CAS  Google Scholar 

  103. Verbinnen T, Fevery B, Vijgen L, Jacobs T, De Meyer S, Lenz O. In vitro activity of simeprevir against hepatitis C virus genotype 1 clinical isolates and its correlation with NS3 sequence and site-directed mutants. Antimicrob Agents Chemother. 2015;59:7548–57.

    Article  CAS  Google Scholar 

  104. Lontok E, Harrington P, Howe A, Kieffer T, Lennerstrand J, Lenz O, McPhee F, Mo H, Parkin N, Pilot-Matias T, Miller V. Hepatitis C virus drug resistance-associated substitutions: state of the art summary. Hepatology. 2015;62:1623–32. https://doi.org/10.1002/hep.27934.

    Article  PubMed  Google Scholar 

  105. Krishnan P, Schnell G, Tripathi R, Beyer J, Reisch T, Zhang X, Setze C, Rodrigues L Jr, Burroughs M, Redman R, Chayama K, Kumada H, Collins C, Pilot-Matias T. Analysis of hepatitis C virus genotype 1b resistance variants in Japanese patients treated with paritaprevir-ritonavir and ombitasvir. Antimicrob Agents Chemother. 2016;60:1106–13. https://doi.org/10.1128/AAC.02606-15.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  106. Pilot-Matias T, Tripathi R, Cohen D, Gaultier I, Dekhtyar T, Lu L, Reisch T, Irvin M, Hopkins T, Pithawalla R, Middleton T, Ng T, McDaniel K, Or YS, Menon R, Kempf D, Molla A, Collins C. In vitro and in vivo antiviral activity and resistance profile of the hepatitis C virus NS3/4A protease inhibitor ABT-450. Antimicrob Agents Chemother. 2015;59:988–97. https://doi.org/10.1128/AAC.04227-14.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  107. Ludmerer SW, Hirano T, Black S, Howe AY, Chang W, Takase A, Nakamura K, Tanaka Y, Kumada H, Hayashi N, Nickle D. HCV evolutionary genetics of SVR versus virologic failure assessed from the vaniprevir phase III registration trials. Antivir Res. 2016;130:118–29. https://doi.org/10.1016/j.antiviral.2016.03.004.

    Article  CAS  PubMed  Google Scholar 

  108. Poordad F, Gordon SC, Asatryan A, et al. High efficacy of ABT-493 and ABT-530 in HCV genotype-1 infected patients who have failed direct-acting antiviral-containing regimens: the MAGELLAN-I 19 study [Abstract SAT-157]. In: The international liver congress™ EASL—European association for the study of the liver. Barcelona, Spain: Journal of Hepatology; 2016. p. S768.

  109. Gane EJ, Schwabe C, Hyland RH, et al. Efficacy of the combination of sofosbuvir, velpatasvir, and the NS3/4A protease inhibitor GS-9857 in treatment-naive or previously treated patients with HCV genotype 1 or 3 infections. Gastroenterology. 2016;151:448–456

    Google Scholar 

  110. Lawitz E, Dvory-Sobol H, Yang JC, et al. Characterization of HCV resistance from a 3-day monotherapy study of GS-9857, a novel pangenotypic NS3/4A protease inhibitor [Abstract 718]. American Association for the Study of Liver Diseases (AASLD), vol. 62 San Francisco: Hepatology; 2015. p. 119A.

  111. Bartolini B, Selleri M, Garbuglia AR, Giombini E, Taibi C, Lionetti R, D’Offizi G, Capobianchi MR. HCV NS3 quasispecies in liver and plasma and dynamics of telaprevir resistant variants in breakthrough patients assessed by UDPS: a case study. J Clin Virol. 2015;72:60–5.

    Article  Google Scholar 

  112. Beloukas A, King S, Childs K, Papadimitropoulos A, Hopkins M, Atkins M, Agarwal K, Nelson M, Geretti AM. Detection of the NS3 Q80K polymorphism by Sanger and deep sequencing in hepatitis C virus genotype 1a strains in the UK. Clin Microbiol Infect. 2015;21:1033–339.

    Article  CAS  Google Scholar 

  113. Boglione L, De Nicolo A, Cardellino CS, Ruggiero T, Ghisetti V, Cariti G, Di Perri G, D’Avolio A. Relationship between the early boceprevir-S isomer plasma concentrations and the onset of breakthrough during HCV genotype 1 triple therapy. Clin Microbiol Infect. 2015;21:205.e1.

    Article  CAS  Google Scholar 

  114. Liverton NJ, Carroll SS, Dimuzio J, et al. MK-7009, a potent and selective inhibitor of hepatitis C virus NS3/4A protease. Antimicrob Agents Chemother. 2010;54:305–11.

    Article  CAS  Google Scholar 

  115. Verbinnen T, Van Marck H, Vandenbroucke I, et al. Tracking the evolution of multiple in vitro hepatitis C virus replicon variants under protease inhibitor selection pressure by 454 deep sequencing. J Virol. 2010;84:11124–33.

    Article  CAS  Google Scholar 

  116. Larrat S, Vallet S, David-Tchouda S, Caporossi A, Margier J, Ramiere C, Scholtes C, Ha€ım-Boukobza S, Roque-Afonso AM, Besse B, Andre-Garnier E, Mohamed S, Halfon P, Pivert A, LeGuillou-Guillemette H, Abravanel F, Guivarch M, Mackiewicz V, Lada O, Mourez T, Plantier JC, Baazia Y, Alain S, Hantz S, Thibault V, Gaudy-Graffin C, Bouvet D, Mirand A, Henquell C, Gozlan J, Lagathu G, Pronier C, Velay A, Schvoerer E, Trimoulet P, Fleury H, Bouvier-Alias M, Brochot E, Duverlie G, Maylin S, Gouriou S, Pawlotsky JM, Morand P. Naturally occurring resistance-associated variants of hepatitis C virus protease inhibitors in poor responders to pegylated interferon-ribavirin. J Clin Microbiol. 2015;53:2195–202.

    Article  CAS  Google Scholar 

  117. Susser S, Dietz J, Vermehren J, et al. European RAVs database: frequency and characteristics of RAVs in treatment-naive and DAA-experienced patients [Abstract PS007]. In: Abstracts of the international liver congress™ 2016, EASL—European Association for the Study of the Liver. Barcelona, Spain: Journal of Hepatology; 2016. p. S139.

  118. Kumada H, Chayama K, Rodrigues L Jr, Suzuki F, Ikeda K, Toyoda H, Sato K, Karino Y, Matsuzaki Y, Kioka K, Setze C, Pilot-Matias T, Patwardhan M, Vilchez RA, Burroughs M, Redman R. Randomized phase 3 trial of ombitasvir/paritaprevir/ritonavir for hepatitis C virus genotype 1b-infected Japanese patients with or without cirrhosis. Hepatology. 2015;62:1037–46. https://doi.org/10.1002/hep.27972.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  119. Schnell G, Tripathi R, Beyer J, et al. Hepatitis C virus genotype 4 resistance and subtype demographic characterization of patients treated with ombitasvir plus paritaprevir/ritonavir. Antimicrob Agents Chemother. 2015;59:6807–15.

    Article  CAS  Google Scholar 

  120. Iio E, Shimada N, Abe H, et al. Efficacy of daclatasvir/asunaprevir according to resistance-associated variants in chronic hepatitis C with genotype 1. J Gastroenterol. 2016. https://doi.org/10.1007/s00535-016-1225-x (Epub 2016 May 28).

    Article  PubMed  Google Scholar 

  121. McPhee F, Hernandez D, Yu F, et al. Resistance analysis of hepatitis C virus genotype 1 prior treatment null responders receiving daclatasvir and asunaprevir. Hepatology. 2013;58:902–11. https://doi.org/10.1002/hep.26388 (Epub 2013 Jul 16).

    Article  CAS  PubMed  Google Scholar 

  122. Lenz O, Verbinnen T, Fevery B, et al. Virology analyses of HCV isolates from genotype 1-infected patients treated with simeprevir plus peginterferon/ribavirin in phase IIb/III studies. J Hepatol. 2015;62:1008–14.

    Article  CAS  Google Scholar 

  123. Ruggiero T, Proietti A, Boglione L, Milia MG, Allice T, Burdino E, Orofino G, Bonora S, Di Perri G, Ghisetti V. Predominance of hepatitis C virus Q80K among NS3 baseline-resistance associated amino acid variants in direct-antiviral-agent-naïve patients with chronic hepatitis: single-centre experience. Arch Virol. 2015;160:2881–5.

    Article  CAS  Google Scholar 

  124. Dietz J, Susser S, Vermehren J, Peiffer KH, Grammatikos G, Berger A, Ferenci P, Buti M, Müllhaupt B, Hunyady B, Hinrichsen H, Mauss S, Petersen J, Buggisch P, Felten G, Hüppe D, Knecht G, Lutz T, Schott E, Berg C, Spengler U, von Hahn T, Berg T, Zeuzem S, Sarrazin C, European HCV Resistance Study Group. Patterns of resistance-associated substitutions in patients with chronic HCV infection following treatment with direct-acting antivirals. Gastroenterology. 2017. https://doi.org/10.1053/j.gastro.2017.11.007.

    Article  PubMed  PubMed Central  Google Scholar 

  125. Taylor JG, Appleby T, Barauskas O, et al. Preclinical profile of the pan-genotypic HCV NS3/4A protease inhibitor GS-9857 [Abstract P0899]. In: EASL—the international liver congress 2015 50th annual Meeting of the European association for the Study of the Liver. Vienna, Austria: Journal of Hepatology; 2015. p. S681.

  126. Kattakuzhy S, Wilson E, Sidharthan S, et al. Moderate sustained virologic response rates with 6-week combination directly acting anti-hepatitis C virus therapy in patients with advanced liver disease. Clin Infect Dis. 2016;62:440–7.

    CAS  PubMed  Google Scholar 

  127. Lim SR, Qin X, Susser S, Nicholas JB, Lange C, Herrmann E, Hong J, Arfsten A, Hooi L, Bradford W, Nájera I, Smith P, Zeuzem S, Kossen K, Sarrazin C, Seiwert SD. Virologic escape during danoprevir (ITMN-191/RG7227) monotherapy is hepatitis C virus subtype dependent and associated with R155K substitution. Antimicrob Agents Chemother. 2012;56:271–79. https://doi.org/10.1128/AAC.05636-11.

    Article  CAS  Google Scholar 

  128. Romano KP, Ali A, Aydin C, Soumana D, Ozen A, Deveau LM, Silver C, Cao H, Newton A, Petropoulos CJ, Huang W, Schiffer CA. The molecular basis of drug resistance against hepatitis C virus NS3/4A protease inhibitors. PLoS Pathog. 2012;8:e1002832. https://doi.org/10.1371/journal.ppat.1002832.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  129. Serre SB, Jensen SB, Ghanem L, Humes DG, Ramirez S, Li YP, Krarup H, Bukh J, Gottwein JM. Hepatitis C virus genotype 1 to 6 protease inhibitor escape variants: in vitro selection, fitness, and resistance patterns in the context of the infectious viral life cycle. Antimicrob Agents Chemother. 2016;60:3563–78. https://doi.org/10.1128/AAC.02929-15.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  130. Howe AY, Black S, Curry S, Ludmerer SW, Liu R, Barnard RJ, Newhard W, Hwang PM, Nickle D, Gilbert C, Caro L, DiNubile MJ, Mobashery N. Virologic resistance analysis from a phase 2 study of MK-5172 combined with pegylated interferon/ribavirin in treatment-naive patients with hepatitis C virus genotype 1 infection. Clin Infect Dis. 2014;59:1657–65. https://doi.org/10.1093/cid/ciu696.

    Article  CAS  PubMed  Google Scholar 

  131. Soumana DI, Ali A, Schiffer CA. Structural analysis of asunaprevir resistance in HCV NS3/4A protease. ACS Chem Biol. 2014;9:2485–90.

    Article  CAS  Google Scholar 

  132. Jensen SB, Serre SB, Humes DG, Ramirez S, Li YP, Bukh J, Gottwein JM. Substitutions at NS3 residue 155, 156, or 168 of hepatitis C virus genotypes 2 to 6 induce complex patterns of protease inhibitor resistance. Antimicrob Agents Chemother. 2015;59:7426–36. https://doi.org/10.1128/AAC.01953-15.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  133. Black S, Pak I, Ingravallo P, et al. Resistance analysis of virologic failures in hepatitis c genotype 1-infected patients treated with grazoprevir + elbasvir ± ribavirin: the C-WORTHY study [abstract P0891]. In: The international liver congress 2015, 50th annual meeting of the European association for the Study of the Liver (EASL). Vienna, Austria: Journal of Hepatology; 2015. p. S677–S8.

  134. Ng T, Reisch T, Middleton T, et al. ABT-493, a Potent HCV NS3/4A protease inhibitor with broad genotype coverage [abstract 636]. In: 21st conference on retroviruses and opportunistic infections-CROI. Boston; 2014.

  135. Reau N, Nguyen MH, Kowdley KV, et al. Integrated resistance analyses of HCV-infected patients treated with sofosbuvir, velpatasvir and voxilaprevir for 8 and 12 weeks from phase 2 studies [Poster 846. American Association for the Study of Liver Diseases (AASLD). Boston: Hepatology; 2016.

    Google Scholar 

  136. Ali A, Aydin C, Gildemeister R, Romano KP, Cao H, Ozen A, Soumana D, Newton A, Petropoulos CJ, Huang W, Schiffer CA. Evaluating the role of macrocycles in the susceptibility of hepatitis C virus NS3/4A protease inhibitors to drug resistance. ACS Chem Biol. 2013;8:1469–78. https://doi.org/10.1021/cb400100g.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  137. Suzuki Y, Ikeda K, Suzuki F, Toyota J, Karino Y, Chayama K, Kawakami Y, Ishikawa H, Watanabe H, Hu W, Eley T, McPhee F, Hughes E, Kumada H. Dual oral therapy with daclatasvir and asunaprevir for patients with HCV genotype 1b infection and limited treatment options. J Hepatol. 2013;58:655–62. https://doi.org/10.1016/j.jhep.2012.09.037.

    Article  CAS  PubMed  Google Scholar 

  138. Zeuzem S, Foster GR, Wang S, Asatryan A, Gane E, Feld JJ, Asselah T, Bourlière M, Ruane PJ, Wedemeyer H, Pol S, Flisiak R, Poordad F, Chuang WL, Stedman CA, Flamm S, Kwo P, Dore GJ, Sepulveda-Arzola G, Roberts SK, Soto-Malave R, Kaita K, Puoti M, Vierling J, Tam E, Vargas HE, Bruck R, Fuster F, Paik SW, Felizarta F, Kort J, Fu B, Liu R, Ng TI, Pilot-Matias T, Lin CW, Trinh R, Mensa FJ. Glecaprevir-pibrentasvir for 8 or 12 weeks in HCV genotype 1 or 3 infection. N Engl J Med. 2018;378:354–69. https://doi.org/10.1056/NEJMoa1702417.

    Article  CAS  PubMed  Google Scholar 

  139. Gane E, Svarovskaia ES, Hyland RH, et al. Resistance analysis of treatment-naïve and DAA-experienced genotype 1 patients with and without cirrhosis who received short-duration treatment with sofosbuvir/velpatasvir + GS-9857 [abstract 713], Vol. 62. San Francisco: Hepatology: American Association for the Study of Liver Diseases (AASLD); 2015.

  140. Karino Y, Toyota J, Ikeda K, Suzuki F, Chayama K, Kawakami Y, Ishikawa H, Watanabe H, Hernandez D, Yu F, McPhee F, Kumada H. Characterization of virologic escape in hepatitis C virus genotype 1b patients treated with the direct-acting antivirals daclatasvir and asunaprevir. J Hepatol. 2013;58:646–54. https://doi.org/10.1016/j.jhep.2012.11.012.

    Article  CAS  PubMed  Google Scholar 

  141. Wang C, Jia L, O’Boyle DR 2nd, Sun JH, Rigat K, Valera L, Nower P, Huang X, Kienzle B, Roberts S, Gao M, Fridell RA. Comparison of daclatasvir resistance barriers on NS5A from hepatitis C virus genotypes 1 to 6: implications for cross-genotype activity. Antimicrob Agents Chemother. 2014;58:5155–63. https://doi.org/10.1128/AAC.02788-14.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  142. Bilello JP, Lallos LB, McCarville JF, La Colla M, Serra I, Chapron C, Gillum JM, Pierra C, Standring DN, Seifer M. In vitro activity and resistance profile of samatasvir, a novel NS5A replication inhibitor of hepatitis C virus. Antimicrob Agents Chemother. 2014;58:4431–42. https://doi.org/10.1128/AAC.02777-13.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  143. Zhou N, Hernandez D, Ueland J, Yang X, Yu F, Sims K, Yin PD, McPhee F. NS5A sequence heterogeneity and mechanisms of daclatasvir resistance in hepatitis C virus genotype 4 infection. The Journal of infectious diseases. 2016;213:206–15. https://doi.org/10.1093/infdis/jiv379.

    Article  CAS  Google Scholar 

  144. Manns M, Samuel D, Gane EJ, Mutimer D, McCaughan G, Buti M, Prieto M, Calleja JL, Peck-Radosavljevic M, Müllhaupt B, Agarwal K, Angus P, Yoshida EM, Colombo M, Rizzetto M, Dvory-Sobol H, Denning J, Arterburn S, Pang PS, Brainard D, McHutchison JG, Dufour JF, Van Vlierberghe H, van Hoek B, Forns X. SOLAR-2 investigators. Ledipasvir and sofosbuvir plus ribavirin in patients with genotype 1 or 4 hepatitis C virus infection and advanced liver disease: a multicentre, open-label, randomised, phase 2 trial. Lancet Infect Dis. 2016;16:685–97. https://doi.org/10.1016/S1473-3099(16)00052-9.

    Article  CAS  Google Scholar 

  145. Schnell G, Tripathi R, Beyer J, et al. Combined resistance, demographic, and phylogenetic analysis of HCV genotype 4-infected patients treated with ombitasvir/paritaprevir/r +/- ribavirin in the PEARL-I and AGATE-I studies [Poster 866. In: American Association for the Study of Liver Diseases (AASLD). Boston (MA): Hepatology; 2016. p. 427–176.

  146. Jacobson IM, Liu EA-A. R, et al. Prevalence and impact of baseline NS5A resistance associated variants (RAVs) on the efficacy of elbasvir/grazoprevir (EBR/GZR) against GT1a infection [abstract LB22]. In: American Association for the Study of Liver Diseases (AASLD). San Francisco: Hepatology; 2015.

  147. Peres-da-Silva A, de Almeida A, Lampe E. NS5A inhibitor resistance-associated polymorphisms in Brazilian treatment-naive patients infected with genotype 1 hepatitis C virus. J Antimicrob Chemother. 2015;70:726–30.

    Article  CAS  Google Scholar 

  148. Asselah T, Reesink H, Gerstoft J, de Ledinghen V, Pockros PJ, Robertson M, Hwang P, Asante-Appiah E, Wahl J, Nguyen BY, Barr E, Talwani R, Serfaty L. Efficacy of elbasvir and grazoprevir in participants with hepatitis C virus genotype 4 infection: a pooled analysis. Liver Int. 2018. https://doi.org/10.1111/liv.13727.

    Article  PubMed  Google Scholar 

  149. Hezode C, Colombo M, Spengler U, et al. C-EDGE IBLD: efficacy and safety of elbasvir/grazoprevir in patients with chronic hepatitis c virus infection and inherited blood disorders [Abstract SAT-128]. In: The international liver congress™ EASL—European Association for the Study of the Liver. Barcelona: Journal of Hepatology; 2016. p. S753.

  150. Ferenci P, Bernstein D, Lalezari J, Cohen D, Luo Y, Cooper C, Tam E, Marinho RT, Tsai N, Nyberg A, Box TD, Younes Z, Enayati P, Green S, Baruch Y, Bhandari BR, Caruntu FA, Sepe T, Chulanov V, Janczewska E, Rizzardini G, Gervain J, Planas R, Moreno C, Hassanein T, Xie W, King M, Podsadecki T, Reddy KR, PEARL-III Study; PEARL-IV Study. ABT-450/r-ombitasvir and dasabuvir with or without ribavirin for HCV. N Engl J Med. 2014;370:1983-92. https://doi.org/10.1056/NEJMoa1402338.

    Article  CAS  PubMed  Google Scholar 

  151. Komatsu TE, Boyd S, Sherwat A, Tracy L, Naeger LK, O’Rear JJ, Harrington PR. Regulatory analysis of effects of hepatitis C virus NS5A polymorphisms on efficacy of elbasvir and grazoprevir. Gastroenterology. 2017;152:586–97. https://doi.org/10.1053/j.gastro.2016.10.017.

    Article  CAS  PubMed  Google Scholar 

  152. Rockstroh JK, Nelson M, Katlama C, Lalezari J, Mallolas J, Bloch M, Matthews GV, Saag MS, Zamor PJ, Orkin C, Gress J, Klopfer S, Shaughnessy M, Wahl J, Nguyen BY, Barr E, Platt HL, Robertson MN, Sulkowski M. Efficacy and safety of grazoprevir (MK-5172) and elbasvir (MK-8742) in patients with hepatitis C virus and HIV co-infection (C-EDGE CO-INFECTION): a non-randomised, open-label trial. Lancet HIV. 2015;2:e319–27. https://doi.org/10.1016/S2352-3018(15)00114-9.

    Article  Google Scholar 

  153. Patel D, Zhao Y, Fabrycki J, et al. Achievement of SVR24 despite the presence of HCV variants resistant to first-generation NS5A inhibitors in genotype-1 hepatitis C patients after 8-week therapy of ACH-3102 in combination with sofosbuvir [Abstract P0805]. In: EASL—the international liver congress 2015 50th annual Meeting of the European association for the Study of the Liver. Vienna, Austria: Journal of Hepatology; 2015.

  154. Huang W, Newton A, Frantzell A, et al. Genotypic and phenotypic characterization of clinical HCV NS5A drug resistance [abstract 579]. In: Conference on retroviruses and opportunistic infections (CROI). Boston; 2016.

  155. Lawitz E, Gane E, Pearlman B, Tam E, Ghesquiere W, Guyader D, Alric L, Bronowicki JP, Lester L, Sievert W, Ghalib R, Balart L, Sund F, Lagging M, Dutko F, Shaughnessy M, Hwang P, Howe AY, Wahl J, Robertson M, Barr E, Haber B. Efficacy and safety of 12 weeks versus 18 weeks of treatment with grazoprevir (MK-5172) and elbasvir (MK-8742) with or without ribavirin for hepatitis C virus genotype 1 infection in previously untreated patients with cirrhosis and patients with previous null response with or without cirrhosis (C-WORTHY): a randomised, open-label phase 2 trial. Lancet. 2015;385:1075–86. https://doi.org/10.1016/S0140-6736(14)61795-5.

    Article  CAS  PubMed  Google Scholar 

  156. Wilson EM, Kattakuzhy S, Sidharthan S, Sims Z, Tang L, McLaughlin M, Price A, Nelson A, Silk R, Gross C, Akoth E, Mo H, Subramanian GM, Pang PS, McHutchison JG, Osinusi A, Masur H, Kohli A, Kottilil S. Successful retreatment of chronic HCV genotype-1 infection with ledipasvir and sofosbuvir after initial short course therapy with direct-acting antiviral regimens. Clin Infect Dis. 2016;62:280–8. https://doi.org/10.1093/cid/civ874.

    Article  CAS  Google Scholar 

  157. Stirnimann G. Ombitasvir. (ABT-267), a novel NS5A inhibitor for the treatment of hepatitis C. Expert Opin Pharmacother. 2014;15:2609–22.

    Article  CAS  Google Scholar 

  158. Walker J, Crosby R, Wang A, Woldu E, Vamathevan J, Voitenleitner C, You S, Remlinger K, Duan M, Kazmierski W, Hamatake R. Preclinical characterization of GSK2336805, a novel inhibitor of hepatitis C virus replication that selects for resistance in NS5A. Antimicrob Agents Chemother. 2014;58:38–47. https://doi.org/10.1128/AAC.01363-13.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  159. Gao M, Nettles RE, Belema M, Snyder LB, Nguyen VN, Fridell RA, Serrano-Wu MH, Langley DR, Sun JH, O’Boyle DR 2nd, Lemm JA, Wang C, Knipe JO, Chien C, Colonno RJ, Grasela DM, Meanwell NA, Hamann LG. Chemical genetics strategy identifies an HCV NS5A inhibitor with a potent clinical effect. Nature. 2010;465:96–100. https://doi.org/10.1038/nature08960.

    Article  CAS  PubMed  Google Scholar 

  160. Fridell RA, Qiu D, Wang C, Valera L, Gao M. Resistance analysis of the hepatitis C virus NS5A inhibitor BMS-790052 in an in vitro replicon system. Antimicrob Agents Chemother. 2010;54:3641–50.

    Article  CAS  Google Scholar 

  161. Dvory-Sobol H, Doehle B, Svarovskaia E, et al. The prevalence of HCV NS5A nucleoside and protease inhibitor resistance associated variants and the effects on treatment with ledipasvir/sofosbuvir + RBV in the phase 3 ION study. In: International workshop on antiviral drug resistance Berlin, German; 2014.

  162. Sulkowski M, Krishnan P, Tripathi R, et al Effect of baseline resistance-associated variants on SVR with the 3D regimen plus RBV [abstract 6LB-3113]. In: 23rd annual conference on retroviruses and opportunistic infections, CROI. Boston, Massachusetts; 2016.

  163. Fridell RA, Wang C, Sun JH, O’Boyle DR 2nd, Nower P, Valera L, Qiu D, Roberts S, Huang X, Kienzle B, Bifano M, Nettles RE, Gao M. Genotypic and phenotypic analysis of variants resistant to hepatitis C virus nonstructural protein 5A replication complex inhibitor BMS-790052 in humans: in vitro and in vivo correlations. Hepatology. 2011;54:1924–35. https://doi.org/10.1002/hep.24594.

    Article  CAS  PubMed  Google Scholar 

  164. Curry MP, O’Leary JG, Bzowej N, et al. Sofosbuvir and velpatasvir for HCV in patients with decompensated cirrhosis. N Engl J Med. 2015;373:2618–28.

    Article  CAS  Google Scholar 

  165. Sarrazin C, Dvory-Sobol H, Svarovskaia ES, et al. The prevalence and the effect of HCV NS5A resistance-associated variants in patients with compensated cirrhosis treated with ledipasvir/sofosbuvir ± RBV [abstract P0773]. In: The International liver congress 2015, 50th 24 annual Meeting of the European association for the Study of the Liver (EASL). Vienna, Austria: Journal of Hepatology; 2015. p. S620.

  166. Wong KA, Worth A, Martin R, et al. Characterization of Hepatitis C virus resistance from a multiple-dose clinical trial of the novel NS5A inhibitor GS-5885. Antimicrob Agents Chemother. 2013;57:6333–40.

    Article  CAS  Google Scholar 

  167. Hezode C, Asselah T, Reddy KR, et al. Ombitasvir plus paritaprevir plus ritonavir with or without ribavirin in treatment-naive and treatment-experienced patients with genotype 4 chronic hepatitis C virus infection (PEARL-I): a randomised, open-label trial. Lancet. 2015;385(9986):2502–9.

    Article  CAS  Google Scholar 

  168. Wang C, Jia L, Huang H, Qiu D, Valera L, Huang X, Sun JH, Nower PT, O’Boyle DR 2nd, Gao M, Fridell RA. In vitro activity of BMS-790052 on hepatitis C virus genotype 4 NS5A. Antimicrob Agents Chemother. 2012;56:1588–90. https://doi.org/10.1128/AAC.06169-11.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  169. Wang C, Valera L, Jia L, Kirk MJ, Gao M, Fridell RA. In vitro activity of daclatasvir on hepatitis C virus genotype 3 NS5A. Antimicrob Agents Chemother. 2013;57:611–3.

    Article  CAS  Google Scholar 

  170. Zhou N, Han Z, Hartman NS, et al. High sustained virologic response rates in patients infected with HCV genotype 2 with baseline NS5A polymorphisms treated with daclatasvir-based regimens [abstract 234]. In: The international liver congress™ EASL—European Association for the Study of the Liver. Spain: Barcelona; 2016. p. S407.

  171. Hernandez D, Zhou N, Ueland J, Monikowski A, McPhee F. Natural prevalence of NS5A polymorphisms in subjects infected with hepatitis C virus genotype 3 and their effects on the antiviral activity of NS5A inhibitors. J Clin Virol. 2013;57:13–18.

    Article  Google Scholar 

  172. Lahser FC, Bystol K, Curry S, McMonagle P, Xia E, Ingravallo P, Chase R, Liu R, Black T, Hazuda D, Howe AY, Asante-Appiah E. The combination of grazoprevir, a hepatitis C virus (HCV) NS3/4A protease inhibitor, and elbasvir, an HCV NS5A inhibitor, demonstrates a high genetic barrier to resistance in HCV genotype 1a replicons. Antimicrob Agents Chemother. 2016;60:2954–64. https://doi.org/10.1128/AAC.00051-16.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  173. Kowdley KV, Gordon SC, Reddy KR, et al. Ledipasvir and sofosbuvir for 8 or 12 weeks for chronic HCV without cirrhosis. N Engl J Med. 2014;370:1879–88.

    Article  Google Scholar 

  174. Charlton M, Manns M, Dvory-Sobol H, et al. Resistance analyses for ledipasvir/sofosbuvir-containing regimens in patients infected with chronic HCV who have advanced liver disease or are post liver transplant (SOLAR-1 and -2 studies). In: The international liver congress™ 2016. Spain: EASL. Barcelona; 2016.

    Article  Google Scholar 

  175. Lawitz E, Freilich B, Link J, et al. A phase 1, randomized, dose: ranging study of GS-5816, a once-daily NS5A inhibitor, in patients with genotype 1–4 hepatitis C virus. J Viral Hepat. 2015;22:1011–9.

    Article  CAS  Google Scholar 

  176. Abergel A, Metivier S, Samuel D, et al. Ledipasvir plus sofosbuvir for 12 weeks in patients with hepatitis C genotype 4 infection. Hepatology. 2016;64:1049–1056.

    Article  Google Scholar 

  177. Xu S, Rajyaguru S, Hebner C, et al. In vitro selection of resistance to sofosbuvir in GT 2a, 2b, 3a, 4a, 5a and 6a replicons [abstract O_01B]. In: International workshop on hepatitis C resistance and new compounds. Cambridge, USA; 2013.

  178. Svarovskaia ES, Dvory-Sobol H, Parkin N, Hebner C, Gontcharova V, Martin R, Ouyang W, Han B, Xu S, Ku K, Chiu S, Gane E, Jacobson IM, Nelson DR, Lawitz E, Wyles DL, Bekele N, Brainard D, Symonds WT, McHutchison JG, Miller MD, Mo H. Infrequent development of resistance in genotype 1–6 hepatitis C virus-infected subjects treated with sofosbuvir in phase 2 and 3 clinical trials. Clin Infect Dis. 2014;59:1666–74. https://doi.org/10.1093/cid/ciu697.

    Article  CAS  PubMed  Google Scholar 

  179. Lemm JA, Liu M, Gentles RG, Ding M, Voss S, Pelosi LA, Wang YK, Rigat KL, Mosure KW, Bender JA, Knipe JO, Colonno R, Meanwell NA, Kadow JF, Santone KS, Roberts SB, Gao M. Preclinical characterization of BMS-791325, an allosteric inhibitor of hepatitis C Virus NS5B polymerase. Antimicrob Agents Chemother. 2014;58:3485–95.

    Article  Google Scholar 

  180. Devogelaere B, Berke JM, Vijgen L, Dehertogh P, Fransen E, Cleiren E, van der Helm L, Nyanguile O, Tahri A, Amssoms K, Lenz O, Cummings MD, Clayton RF, Vendeville S, Raboisson P, Simmen KA, Fanning GC, Lin TI. TMC647055, a potent nonnucleoside hepatitis C virus NS5B polymerase inhibitor with cross-genotypic coverage. Antimicrob Agents Chemother. 2012;56:4676–84. https://doi.org/10.1128/AAC.00245-12.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  181. Poordad F, Hezode C, Trinh R, Kowdley KV, Zeuzem S, Agarwal K, Shiffman ML, Wedemeyer H, Berg T, Yoshida EM, Forns X, Lovell SS, Da Silva-Tillmann B, Collins CA, Campbell AL, Podsadecki T, Bernstein B. ABT-450/r-ombitasvir and dasabuvir with ribavirin for hepatitis C with cirrhosis. N Engl J Med. 2014;370:1973–82. https://doi.org/10.1056/NEJMoa1402869.

    Article  CAS  PubMed  Google Scholar 

  182. Tong X, Le Pogam S, Li L, Haines K, Piso K, Baronas V, Yan JM, So SS, Klumpp K, Nájera I. In vivo emergence of a novel mutant L159F/L320F in the NS5B polymerase confers low-level resistance to the HCV polymerase inhibitors mericitabine and sofosbuvir. J Infect Dis. 2014;209:668–75. https://doi.org/10.1093/infdis/jit562.

    Article  CAS  Google Scholar 

  183. Sulkowski MS, Eron JJ, Wyles D, Trinh R, Lalezari J, Wang C, Slim J, Bhatti L, Gathe J, Ruane PJ, Elion R, Bredeek F, Brennan R, Blick G, Khatri A, Gibbons K, Hu YB, Fredrick L, Schnell G, Pilot-Matias T, Tripathi R, Da Silva-Tillmann B, McGovern B, Campbell AL, Podsadecki T. Ombitasvir, paritaprevir co-dosed with ritonavir, dasabuvir, and ribavirin for hepatitis C in patients co-infected with HIV-1: a randomized trial. JAMA. 2015;313:1223–31.

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Contributions

All authors contributed equally to this paper with conception and design of the study, literature review and analysis, drafting and critical revision and editing, and final approval of the final version.

Corresponding author

Correspondence to Evangelista Sagnelli.

Ethics declarations

Conflict of interest

No potential conflicts of interest. No financial support.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Sagnelli, E., Starace, M., Minichini, C. et al. Resistance detection and re-treatment options in hepatitis C virus-related chronic liver diseases after DAA-treatment failure. Infection 46, 761–783 (2018). https://doi.org/10.1007/s15010-018-1188-3

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s15010-018-1188-3

Keywords

Navigation