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MicroRNA: implications in HIV, a brief overview

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Abstract

MicroRNAs (miRNAs) are 20–22 nucleotide length noncoding RNA molecules that represent key regulators of many normal cellular functions. miRNAs undergo two processing steps which transform a long primary transcript into the mature miRNA. Available literatures demonstrate the association between alterations in the expression of miRNAs and the progression of numerous human disorders. Even though significant advances have been made, many fundamental questions about their expression and function still remain unanswered. Identifying factors that block the negative action of drugs of abuse on the miRNAs could help in identifying new therapeutic strategies. In this review, we briefly discuss the importance of miRNAs on HIV, strategies used by virus to avoid the cells' antiviral miRNA defenses, and how HIV might control and regulate host cell genes by encoding viral miRNAs.

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Abbreviations

AATF:

Apoptosis-antagonizing transcription factor

BDNF:

Brain-derived neurotrophic factor

CCR5:

C–C chemokine receptor type 5

CNS:

Central nervous system

CREB:

cAMP response element binding

DC-SIGN:

Dendritic cell-specific adhesion molecule-3-grabbing non-integrin

HAD:

HIV-associated dementia

HAND:

HIV-associated neurocognitive disorders

HDAC-1:

Histone deacetylase-1

HIV:

Human immune deficiency virus

HIVE:

HIV encephalitis

IFITM3:

Interferon-induced transmembrane protein 3

LTR:

Long terminal repeats

MCP-2:

Monocyte chemotactic protein-2

MDD:

Major depressive disorder

MDDC:

Monocyte-derived dendritic cells

MEF2C:

Myocyte enhancer factor 2C

MeCP2:

Methyl CpG-binding protein-2

miRNA:

MicroRNA

mRNA:

Messenger RNA

nt:

Nucleotide

PBMC:

Peripheral blood mononuclear cells

PCAF:

P300/CBP-associated factor

PFV-1:

Primate foamy virus type-1

RISC:

RNA-induced silencing complex

SNAP25:

Synaptosomal-associated protein 25

sTNFR1A:

Soluble tumor necrosis factor receptor

TLR:

Toll-like receptor

TORC:

Transducer of regulated CREB

TRBP:

TAR binding protein

UTR:

Untranslated region

References

  • Ahluwalia JK, Khan SZ, Soni K, Rawat P, Gupta A, Hariharan M, Scaria V, Lalwani M, Pillai B, Mitra D, Brahmachari SK (2008) Human cellular microRNA hsa-miR-29a interferes with viral nef protein expression and HIV-1 replication. Retrovirology 5:117

    Article  PubMed  Google Scholar 

  • Bartel DP (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116:281–297

    Article  PubMed  CAS  Google Scholar 

  • Berkhout B (2008) A balancing act: viruses and miRNAs. J Formos Med Assoc 107:1–3

    Article  PubMed  Google Scholar 

  • Calin GA, Croce CM (2006) MicroRNA signatures in human cancers. Nat Rev Cancer 6:857–866

    Article  PubMed  CAS  Google Scholar 

  • Care A, Catalucci D, Felicetti F, Bonci D, Addario A, Gallo P, Bang ML, Segnalini P, Gu Y, Dalton ND, Elia L, Latronico MV, Hoydal M, Autore C, Russo MA, Dorn GW 2nd, Ellingsen O, Ruiz-Lozano P, Peterson KL, Croce CM, Peschle C, Condorelli G (2007) MicroRNA-133 controls cardiac hypertrophy. Nat Med 13:613–618

    Article  PubMed  CAS  Google Scholar 

  • Carpio L, Klase Z, Coley W, Guendel I, Choi S, Van Duyne R, Narayanan A, Kehn-Hall K, Meijer L, Kashanchi F (2010) microRNA machinery is an integral component of drug-induced transcription inhibition in HIV-1 infection. J RNAi Gene Silencing 6:386–400

    PubMed  CAS  Google Scholar 

  • Cobb BS, Hertweck A, Smith J, O'Connor E, Graf D, Cook T, Smale ST, Sakaguchi S, Livesey FJ, Fisher AG, Merkenschlager M (2006) A role for Dicer in immune regulation. J Exp Med 203:2519–2527

    Article  PubMed  CAS  Google Scholar 

  • Croce CM, Calin GA (2005) miRNAs, cancer, and stem cell division. Cell 122:6–7

    Article  PubMed  CAS  Google Scholar 

  • Dai Y, Huang YS, Tang M, Lv TY, Hu CX, Tan YH, Xu ZM, Yin YB (2007) Microarray analysis of microRNA expression in peripheral blood cells of systemic lupus erythematosus patients. Lupus 16:939–946

    Article  PubMed  CAS  Google Scholar 

  • Eisenberg I, Eran A, Nishino I, Moggio M, Lamperti C, Amato AA, Lidov HG, Kang PB, North KN, Mitrani-Rosenbaum S, Flanigan KM, Neely LA, Whitney D, Beggs AH, Kohane IS, Kunkel LM (2007) Distinctive patterns of microRNA expression in primary muscular disorders. Proc Natl Acad Sci U S A 104:17016–17021

    Article  PubMed  CAS  Google Scholar 

  • Eletto D, Russo G, Passiatore G, Del Valle L, Giordano A, Khalili K, Gualco E, Peruzzi F (2008) Inhibition of SNAP25 expression by HIV-1 Tat involves the activity of mir-128a. J Cell Physiol 216:764–770

    Article  PubMed  CAS  Google Scholar 

  • Hariharan M, Scaria V, Pillai B, Brahmachari SK (2005) Targets for human encoded microRNAs in HIV genes. Biochem Biophys Res Commun 337:1214–1218

    Article  PubMed  CAS  Google Scholar 

  • Hollander JA, Im HI, Amelio AL, Kocerha J, Bali P, Lu Q, Willoughby D, Wahlestedt C, Conkright MD, Kenny PJ (2010) Striatal microRNA controls cocaine intake through CREB signalling. Nature 466:197–202

    Article  PubMed  CAS  Google Scholar 

  • Houzet L, Yeung ML, de Lame V, Desai D, Smith SM, Jeang KT (2008) MicroRNA profile changes in human immunodeficiency virus type 1 (HIV-1) seropositive individuals. Retrovirology 5:118

    Article  PubMed  Google Scholar 

  • Huang J, Wang F, Argyris E, Chen K, Liang Z, Tian H, Huang W, Squires K, Verlinghieri G, Zhang H (2007) Cellular microRNAs contribute to HIV-1 latency in resting primary CD4+ T lymphocytes. Nat Med 13:1241–1247

    Article  PubMed  CAS  Google Scholar 

  • Ikeda S, Kong SW, Lu J, Bisping E, Zhang H, Allen PD, Golub TR, Pieske B, Pu WT (2007) Altered microRNA expression in human heart disease. Physiol Genomics 31:367–373

    Article  PubMed  CAS  Google Scholar 

  • Im HI, Hollander JA, Bali P, Kenny PJ (2010) MeCP2 controls BDNF expression and cocaine intake through homeostatic interactions with microRNA-212. Nat Neurosci 13:1120–1127

    Article  PubMed  CAS  Google Scholar 

  • Kaul D, Ahlawat A, Gupta SD (2009) HIV-1 genome-encoded hiv1-mir-H1 impairs cellular responses to infection. Mol Cell Biochem 323:143–148

    Article  PubMed  CAS  Google Scholar 

  • Kiernan RE, Vanhulle C, Schiltz L, Adam E, Xiao H, Maudoux F, Calomme C, Burny A, Nakatani Y, Jeang KT, Benkirane M, Van Lint C (1999) HIV-1 tat transcriptional activity is regulated by acetylation. EMBO J 18:6106–6118

    Article  PubMed  CAS  Google Scholar 

  • Kim J, Inoue K, Ishii J, Vanti WB, Voronov SV, Murchison E, Hannon G, Abeliovich A (2007) A MicroRNA feedback circuit in midbrain dopamine neurons. Science 317:1220–1224

    Article  PubMed  CAS  Google Scholar 

  • Kim VN, Han J, Siomi MC (2009) Biogenesis of small RNAs in animals. Nat Rev Mol Cell Biol 10:126–139

    Article  PubMed  CAS  Google Scholar 

  • Klase Z, Kale P, Winograd R, Gupta MV, Heydarian M, Berro R, McCaffrey T, Kashanchi F (2007) HIV-1 TAR element is processed by Dicer to yield a viral micro-RNA involved in chromatin remodeling of the viral LTR. BMC Mol Biol 8:63

    Article  PubMed  Google Scholar 

  • Klase Z, Winograd R, Davis J, Carpio L, Hildreth R, Heydarian M, Fu S, McCaffrey T, Meiri E, Ayash-Rashkovsky M, Gilad S, Bentwich Z, Kashanchi F (2009) HIV-1 TAR miRNA protects against apoptosis by altering cellular gene expression. Retrovirology 6:18

    Article  PubMed  Google Scholar 

  • Kloosterman WP, Plasterk RH (2006) The diverse functions of microRNAs in animal development and disease. Dev Cell 11:441–450

    Article  PubMed  CAS  Google Scholar 

  • Kocerha J, Faghihi MA, Lopez-Toledano MA, Huang J, Ramsey AJ, Caron MG, Sales N, Willoughby D, Elmen J, Hansen HF, Orum H, Kauppinen S, Kenny PJ, Wahlestedt C (2009) MicroRNA-219 modulates NMDA receptor-mediated neurobehavioral dysfunction. Proc Natl Acad Sci U S A 106:3507–3512

    Article  PubMed  CAS  Google Scholar 

  • Kumar A, Jeang KT (2008) Insights into cellular microRNAs and human immunodeficiency virus type 1 (HIV-1). J Cell Physiol 216:327–331

    Article  PubMed  CAS  Google Scholar 

  • Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T (2001) Identification of novel genes coding for small expressed RNAs. Science 294:853–858

    Article  PubMed  CAS  Google Scholar 

  • Lecellier CH, Dunoyer P, Arar K, Lehmann-Che J, Eyquem S, Himber C, Saib A, Voinnet O (2005) A cellular microRNA mediates antiviral defense in human cells. Science 308:557–560

    Article  PubMed  CAS  Google Scholar 

  • Lee Y, Kim M, Han J, Yeom KH, Lee S, Baek SH, Kim VN (2004) MicroRNA genes are transcribed by RNA polymerase II. EMBO J 23:4051–4060

    Article  PubMed  CAS  Google Scholar 

  • Liou LY, Herrmann CH, Rice AP (2002) Transient induction of cyclin T1 during human macrophage differentiation regulates human immunodeficiency virus type 1 Tat transactivation function. J Virol 76:10579–10587

    Article  PubMed  CAS  Google Scholar 

  • Lu J, Getz G, Miska EA, Alvarez-Saavedra E, Lamb J, Peck D, Sweet-Cordero A, Ebert BL, Mak RH, Ferrando AA, Downing JR, Jacks T, Horvitz HR, Golub TR (2005) MicroRNA expression profiles classify human cancers. Nature 435:834–838

    Article  PubMed  CAS  Google Scholar 

  • Lu J, Pan Q, Rong L, He W, Liu SL, Liang C (2011) The IFITM proteins inhibit HIV-1 infection. J Virol 85:2126–2137

    Article  PubMed  CAS  Google Scholar 

  • Martinez-Nunez RT, Louafi F, Friedmann PS, Sanchez-Elsner T (2009) MicroRNA-155 modulates the pathogen binding ability of dendritic cells (DCs) by down-regulation of DC-specific intercellular adhesion molecule-3 grabbing non-integrin (DC-SIGN). J Biol Chem 284:16334–16342

    Article  PubMed  CAS  Google Scholar 

  • Motsch N, Pfuhl T, Mrazek J, Barth S, Grasser FA (2007) Epstein–Barr virus-encoded latent membrane protein 1 (LMP1) induces the expression of the cellular microRNA miR-146a. RNA Biol 4:131–137

    Article  PubMed  CAS  Google Scholar 

  • Nathans R, Chu CY, Serquina AK, Lu CC, Cao H, Rana TM (2009) Cellular microRNA and P bodies modulate host-HIV-1 interactions. Mol Cell 34:696–709

    Article  PubMed  CAS  Google Scholar 

  • Noorbakhsh F, Ramachandran R, Barsby N, Ellestad KK, LeBlanc A, Dickie P, Baker G, Hollenberg MD, Cohen EA, Power C (2010) MicroRNA profiling reveals new aspects of HIV neurodegeneration: caspase-6 regulates astrocyte survival. FASEB J 24:1799–1812

    Article  PubMed  CAS  Google Scholar 

  • Omoto S, Fujii YR (2005) Regulation of human immunodeficiency virus 1 transcription by nef microRNA. J Gen Virol 86:751–755

    Article  PubMed  CAS  Google Scholar 

  • Omoto S, Ito M, Tsutsumi Y, Ichikawa Y, Okuyama H, Brisibe EA, Saksena NK, Fujii YR (2004) HIV-1 nef suppression by virally encoded microRNA. Retrovirology 1:44

    Article  PubMed  Google Scholar 

  • Ott M, Dorr A, Hetzer-Egger C, Kaehlcke K, Schnolzer M, Henklein P, Cole P, Zhou MM, Verdin E (2004) Tat acetylation: a regulatory switch between early and late phases in HIV transcription elongation. Novartis Found Symp 259:182–193, discussion 193–196, 223–225

    Article  PubMed  CAS  Google Scholar 

  • Pfeffer S, Zavolan M, Grasser FA, Chien M, Russo JJ, Ju J, John B, Enright AJ, Marks D, Sander C, Tuschl T (2004) Identification of virus-encoded microRNAs. Science 304:734–736

    Article  PubMed  CAS  Google Scholar 

  • Rom S, Rom I, Passiatore G, Pacifici M, Radhakrishnan S, Del Valle L, Pina-Oviedo S, Khalili K, Eletto D, Peruzzi F (2010) CCL8/MCP-2 is a target for mir-146a in HIV-1-infected human microglial cells. FASEB J 24:2292–2300

    Article  PubMed  CAS  Google Scholar 

  • Scaria V, Hariharan M, Pillai B, Maiti S, Brahmachari SK (2007) Host-virus genome interactions: macro roles for microRNAs. Cell Microbiol 9:2784–2794

    Article  PubMed  CAS  Google Scholar 

  • Sonkoly E, Wei T, Janson PC, Saaf A, Lundeberg L, Tengvall-Linder M, Norstedt G, Alenius H, Homey B, Scheynius A, Stahle M, Pivarcsi A (2007) MicroRNAs: novel regulators involved in the pathogenesis of psoriasis? PLoS One 2:e610

    Article  PubMed  Google Scholar 

  • Stanczyk J, Pedrioli DM, Brentano F, Sanchez-Pernaute O, Kolling C, Gay RE, Detmar M, Gay S, Kyburz D (2008) Altered expression of MicroRNA in synovial fibroblasts and synovial tissue in rheumatoid arthritis. Arthritis Rheum 58:1001–1009

    Article  PubMed  Google Scholar 

  • Sung TL, Rice AP (2009) miR-198 inhibits HIV-1 gene expression and replication in monocytes and its mechanism of action appears to involve repression of cyclin T1. PLoS Pathog 5:e1000263

    Article  PubMed  Google Scholar 

  • Taganov KD, Boldin MP, Chang KJ, Baltimore D (2006) NF-kappaB-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses. Proc Natl Acad Sci U S A 103:12481–12486

    Article  PubMed  CAS  Google Scholar 

  • Tatro ET, Scott ER, Nguyen TB, Salaria S, Banerjee S, Moore DJ, Masliah E, Achim CL, Everall IP (2010) Evidence for alteration of gene regulatory networks through microRNAs of the HIV-infected brain: novel analysis of retrospective cases. PLoS One 5:e10337

    Article  PubMed  Google Scholar 

  • Triboulet R, Mari B, Lin YL, Chable-Bessia C, Bennasser Y, Lebrigand K, Cardinaud B, Maurin T, Barbry P, Baillat V, Reynes J, Corbeau P, Jeang KT, Benkirane M (2007) Suppression of microRNA-silencing pathway by HIV-1 during virus replication. Science 315:1579–1582

    Article  PubMed  CAS  Google Scholar 

  • Wang G, van der Walt JM, Mayhew G, Li YJ, Zuchner S, Scott WK, Martin ER, Vance JM (2008) Variation in the miRNA-433 binding site of FGF20 confers risk for Parkinson disease by overexpression of alpha-synuclein. Am J Hum Genet 82:283–289

    Article  PubMed  CAS  Google Scholar 

  • Wang X, Ye L, Hou W, Zhou Y, Wang YJ, Metzger DS, Ho WZ (2009) Cellular microRNA expression correlates with susceptibility of monocytes/macrophages to HIV-1 infection. Blood 113:671–674

    Article  PubMed  CAS  Google Scholar 

  • Wang X, Ye L, Zhou Y, Liu MQ, Zhou DJ, Ho WZ (2011) Inhibition of anti-HIV microRNA expression: a mechanism for opioid-mediated enhancement of HIV infection of monocytes. Am J Pathol 178:41–47

    Article  PubMed  CAS  Google Scholar 

  • Weinberg MS, Morris KV (2006) Are viral-encoded microRNAs mediating latent HIV-1 infection? DNA Cell Biol 25:223–231

    Article  PubMed  CAS  Google Scholar 

  • Yamamoto T, Omoto S, Mizuguchi M, Mizukami H, Okuyama H, Okada N, Saksena NK, Brisibe EA, Otake K, Fuji YR (2002) Double-stranded nef RNA interferes with human immunodeficiency virus type 1 replication. Microbiol Immunol 46:809–817

    PubMed  CAS  Google Scholar 

  • Yelamanchili SV, Chaudhuri AD, Chen LN, Xiong H, Fox HS (2010) MicroRNA-21 dysregulates the expression of MEF2C in neurons in monkey and human SIV/HIV neurological disease. Cell Death Dis 1:e77

    Article  PubMed  CAS  Google Scholar 

  • Yeung ML, Bennasser Y, Le SY, Jeang KT (2005a) siRNA, miRNA and HIV: promises and challenges. Cell Res 15:935–946

    Article  PubMed  CAS  Google Scholar 

  • Yeung ML, Bennasser Y, Myers TG, Jiang G, Benkirane M, Jeang KT (2005b) Changes in microRNA expression profiles in HIV-1-transfected human cells. Retrovirology 2:81

    Article  PubMed  Google Scholar 

  • Yeung ML, Benkirane M, Jeang KT (2007) Small non-coding RNAs, mammalian cells, and viruses: regulatory interactions? Retrovirology 4:74

    Article  PubMed  Google Scholar 

  • Zhao X, Tang Y, Qu B, Cui H, Wang S, Wang L, Luo X, Huang X, Li J, Chen S, Shen N (2010) MicroRNA-125a contributes to elevated inflammatory chemokine RANTES levels via targeting KLF13 in systemic lupus erythematosus. Arthritis Rheum 62:3425–3435

    Article  PubMed  CAS  Google Scholar 

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Acknowledgments

This work was supported in part by grants from the National Institute of Drug Abuse (1R01MH085259, RO1-DA025576, RO1-DA021537, and RO1-DA027049) to Dr. Madhavan Nair.

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The authors have no conflicts of interest to disclose.

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Correspondence to Madhavan P. N. Nair.

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Pilakka-Kanthikeel, S., Saiyed, Z.M., Napuri, J. et al. MicroRNA: implications in HIV, a brief overview. J. Neurovirol. 17, 416–423 (2011). https://doi.org/10.1007/s13365-011-0046-1

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  • DOI: https://doi.org/10.1007/s13365-011-0046-1

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