Abstract
The function of hemoglobin (Hb) as oxygen transporter is mediated by reversible O2 binding to Fe(2+) heme in each of the α and β subunits. X-ray crystallography revealed different subunit arrangements in oxy-Hb and deoxy-Hb. The deoxy state is stabilized by additional contacts, causing a rigidification that results in strong protection against hydrogen/deuterium exchange (HDX). Aquomet-Hb is a dysfunctional degradation product with four water-bound Fe(3+) centers. Heme release from aquomet-Hb is relatively facile, triggering oxidative damage of membrane lipids. Aquomet-Hb crystallizes in virtually the same conformation as oxy-Hb. Hence, it is commonly implied that the solution-phase properties of aquomet-Hb should resemble those of the oxy state. This work compares the structural dynamics of oxy-Hb and aquomet-Hb by HDX mass spectrometry (MS). It is found that the aquomet state exhibits a solution-phase structure that is significantly more dynamic, as manifested by elevated HDX levels. These enhanced dynamics affect the aquomet α and β subunits in a different fashion. The latter undergoes global destabilization, whereas the former shows elevated HDX levels only in the heme binding region. It is proposed that these enhanced dynamics play a role in facilitating heme release from aquomet-Hb. Our findings should be of particular interest to the MS community because oxy-Hb and aquomet-Hb serve as widely used test analytes for probing the relationship between biomolecular structure in solution and in the gas phase. We are not aware of any prior comparative HDX/MS experiments on oxy-Hb and aquomet-Hb.
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Eaton, W.A., Henry, E.R., Hofrichter, J., Mozzarelli, A.: Is cooperative oxygen binding by hemoglobin really understood. Nat. Struct. Biol. 6, 351–358 (1999)
Bellelli, A., Brunori, M.: Hemoglobin allostery: Variations on the theme. Biochim. Biophys. Acta 1807, 1262–1272 (2011)
Perutz, M.F., Wilkinson, A.J., Paoli, M., Dodson, G.G.: The stereochemical mechanism of the cooperative effects in hemoglobin revisited. Annu. Rev. Biophys. Biomol. Struct. 27, 1–34 (1998)
Yonetani, T., Laberge, M.: Protein dynamics explain the allosteric behaviors of hemoglobin. Biochim. Biophys. Acta 1784, 1146–1158 (2008)
Dickerson, R.E., Geis, I.: Hemoglobin: Structure, Function, Evolution, and Pathology. The Benjamin/Cummings Publishing Company Inc, Menlo Park, CA (1983)
Kluger, R.: Red cell substitutes from hemoglobin—do we start all over again? Curr. Opin. Chem. Biol. 14, 538–543 (2010)
Antonini, E., Brunori, M.: Hemoglobin and Myoglobin in Their Reactions with Ligands, vol. 21. North-Holland Publishing Company, Amsterdam and London (1971)
Aranda IV, R., Cai, H., Worley, C.E., Levin, E.J., Li, R., Olson, J.S., Phillips Jr., G.N., Richard, M.P.: Structural analysis of fish versus mammalian hemoglobins: Effect of the heme pocket enviornment on autooxidation and hemin loss. Proteins 75, 217–230 (2009)
Kim, K.H., Muniyappan, S., Oang, K.Y., Kim, J.G., Nozawa, S., Sato, T., Koshihara, S.Y., Henning, R., Kosheleva, I., Ki, H., Kim, Y., Kim, T.W., Kim, J., Adachi, S., Ihee, H.: Direct observation of cooperative protein structural dynamics of homodimeric hemoglobin from 100 ps to 10 ms with pump-probe X-ray solution scattering. J. Am. Chem. Soc. 134, 7001–7008 (2012)
Fischer, S., Olsen, K.W., Nam, K., Karplus, M.: Unsuspected pathway of the allosteric transition in hemoglobin. Proc. Natl. Acad. Sci. U.S.A. 108, 5608–5613 (2011)
Safo, M.K., Abraham, D.J.: The enigma of the liganded hemoglobin end state: A novel quaternary structure of human carbonmonoxy hemoglobin. Biochemistry 44, 8347–8359 (2005)
Dey, S., Chakrabarti, P., Janin, J.: A survey of hemoglobin quaternary structures. Proteins 79, 2861–2870 (2011)
Makowski, L., Bardhan, J., Gore, D., LaI, J., Mandava, S., Park, S., Rodi, D.J., Ho, N.T., Ho, C., Fischetti, R.F.: WAXS studies of the structural diversity of hemoglobin in solution. J. Mol. Biol. 408, 909–921 (2011)
Lukin, J.A., Ho, C.: The structure-function relationship of hemoglobin in solution at atomic resolution. Chem. Rev. 104, 1219–1230 (2004)
Song, X.J., Yuan, Y., Simplaceanu, V., Sahu, S.C., Ho, N.T., Ho, C.: A comparative NMR study of the polypeptide backbone dynamics of hemoglobin in the deoxy and carbonmonoxy forms. Biochemistry 46, 6795–6803 (2007)
Chernushevich, I.V., Loboda, A.V., Thomson, B.A.: An introduction to quadrupole time-of-flight mass spectrometry. J. Mass Spectrom. 36, 849–865 (2001)
Edwards, R.L., Creese, A.J., Baumert, M., Griffiths, P., Bunch, J., Cooper, H.J.: Hemoglobin variant analysis via direct surface sampling of dried blood spots coupled with high-resolution mass spectrometry. Anal. Chem. 83, 2265–2270 (2011)
Li, Y.-T., Hsieh, Y.-L., Henion, J.D., Ganem, B.: Studies on heme binding in myoglobin, hemoglobin, and cytochrome c by ion spray mass spectrometry. J. Am. Soc. Mass Spectrom. 4, 631–637 (1993)
Light-Wahl, K.J., Schwartz, B.L., Smith, R.D.: Observation of the noncovalent quaternary association of proteins by electrospray ionization mass spectrometry. J. Am. Chem. Soc. 116, 5271–5278 (1994)
Lemaire, D., Marie, G., Serani, L., Larprevote, O.: Stabilization of gas-phase noncovlanet macromolecular complexes in electrospray mass spectrometry using aqueous triethylammonium bicarbonate buffer. Anal. Chem. 73, 1699–1706 (2001)
Loo, J.A.: Electrospray ionization mass spectrometry: A technology for studying noncovalent macromolecular complexes. Int. J. Mass Spectrom. 200, 175–186 (2000)
Heck, A.J.R.: Native mass spectrometry: A bridge between interactomics and structural biology. Nat. Methods 5, 927–933 (2008)
Benesch, J.L.P., Ruotolo, B.T., Simmons, D.A., Robinson, C.V.: Protein complexes in the gas phase: Technology for structural genomics and proteomics. Chem. Rev. 107, 3544–3567 (2007)
Versluis, C., Heck, A.J.R.: Gas-phase dissociation of hemoglobin. Int. J. Mass Spectrom. 210/211, 637–649 (2001)
Schmidt, A., Karas, M.: The Influence of electrostatic interactions on the detection of heme-globin complexes in ESI-MS. J. Am. Soc. Mass Spectrom. 12, 1092–1098 (2001)
Sciuto, S.V., Liu, J., Konermann, L.: An electrostatic charge partitioning model for the dissociation of protein complexes in the gas phase. J. Am. Soc. Mass Spectrom. 22, 1679–1689 (2011)
Kang, Y., Terrier, P., Douglas, D.J.: Mass spectra and ion collision cross sections of hemoglobin. J. Am. Soc. Mass Spectrom. 22, 290–299 (2011)
Kang, Y., Douglas, D.J.: Gas-phase ions of human hemoglobin A, F, and S. J. Am. Soc. Mass Spectrom. 22, 1187–1196 (2011)
Scarff, C.A., Patel, V.J., Thalassinos, K., Scrivens, J.H.: Probing hemoglobin structure by means of traveling-wave ion mobility mass spectrometry. J. Am. Soc. Mass Spectrom. 20, 625–631 (2009)
Griffith, W.P., Kaltashov, I.A.: Highly asymmetric interactions between globin chains during hemoglobin assembly revealed by electrospray ionization mass spectrometry. Biochemistry 42, 10024–10033 (2003)
Griffith, W.P., Kaltashov, I.A.: Protein conformational heterogeneity as a binding catalyst: ESI-MS study of hemoglobin H formation. Biochemistry 46, 2020–2026 (2007)
Boys, B.L., Kuprowski, M.C., Konermann, L.: Symmetric behavior of hemoglobin α- and β-subunits during acid-induced denaturation observed by electrospray mass spectrometry. Biochemistry 46, 10675–10684 (2007)
Apostol, I.: Assessing the relative stabilities of engineered hemoglobins using electrospray mass spectrometry. Anal. Biochem. 272, 8–18 (1999)
Ferguson, C.N., Benchaar, S.A., Miao, Z.X., Loo, J.A., Chen, H.: Direct ionization of large proteins and protein complexes by desorption electrospray ionization-mass spectrometry. Anal. Chem. 83, 6468–6473 (2011)
Zehl, M., Allmaier, G.: Ultraviolet matrix-assisted laser desorption/ionization time-of-flight mass spectrometry of intact hemoglobin complex from whole human blood. Rapid Commun. Mass Spectrom. 18, 1932–1938 (2004)
Iacob, R.E., Engen, J.R.: Hydrogen exchange mass spectrometry: Are we out of the quicksand? J. Am. Soc. Mass Spectrom. 23, 1003–1010 (2012)
Percy, A.J., Rey, M., Burns, K.M., Schriemer, D.C.: Probing protein interactions with hydrogen/deuterium exchange and mass spectrometry—a review. Anal. Chim. Acta 721, 7–21 (2012)
Englander, S.W.: Hydrogen exchange and mass spectrometry: A historical perspective. J. Am. Soc. Mass Spectrom. 17, 1481–1489 (2006)
Englander, J.J., Del Mar, C., Li, W., Englander, S.W., Kim, J.S., Stranz, D.D., Hamuro, Y., Woods, V.L.: Protein structure change studied by hydrogen-deuterium exchange, functional labeling, and mass spectrometry. Proc. Natl. Acad. Sci. U. S. A. 100, 7057–7062 (2003)
Bunn, H.F., Forget, B.G.: Hemoglobin: Molecular, Genetic, and Clinical Aspects. W.B. Saunders Company, Philadelphia (1986)
Perutz, M.F.: Stereochemistry of cooperative effects in haemoglobin. Nature 228, 726–739 (1970)
Smith, F.R., Simmons, K.C.: Cyanomet human hemoglobin crystallized under physiological conditions exhibits the Y-Quaternary Structure. Proteins 18, 295–300 (1994)
Silva, M.M., Rogers, P.H., Arnone, A.: A third quaternary structure of human hemoglobin-A at 1.7A resolution. J. Biol. Chem. 267, 17248–17256 (1992)
Perutz, M.F., Fersht, A.R., Simon, S.R., Roberts, G.C.K.: Influence of globin structure on the state of the heme. II. Allosteric transitions in methemoglobin. Biochemistry 13, 2174–2186 (1974)
Mitra, G., Muralidharan, M., Narayanan, S., Pinto, J., Srinivasan, K., Mandal, A.K.: Glutathionylation Induced structural changes in oxy human hemoglobin analyzed by backbone amide hydrogen/deuterium exchange and MALDI mass spectrometry. Bioconjug. Chem. 23, 2344–2353 (2012)
Abaturov, L.V., Nosova, N.G., Shlyapnicov, S.V., Faizullin, D.A.: The conformational dynamic of the tetramer hemoglobin molecule as revealed by hydrogen exchange. I. Influence of pH, temperature and ligand binding. Mol. Biol. 40, 326–340 (2006)
Weis, D.D., Engen, J.R., Kass, I.J.: Semi-automated data processing of hydrogen exchange mass spectra using HX-express. J. Am. Soc. Mass Spectrom. 17, 1700–1703 (2006)
Liu, J., Konermann, L.: Protein–Protein binding affinities in solution determined by electrospray mass spectrometry. J. Am. Soc. Mass Spectrom. 22, 408–417 (2011)
Mayne, L., Kan, Z.-Y., Chetty, P.S., Ricciuti, A., Walters, B.T., Englander, S.W.: Many overlapping peptides for protein hydrogen exchange experiments by the fragment separation-mass spectrometry method. J. Am. Soc. Mass Spectrom. 22, 1898–1905 (2011)
Wang, L., Smith, D.L.: Downsizing improves sensitivity 100-fold for hydrogen exchange-mass spectrometry. Anal. Biochem. 314, 46–53 (2003)
Milne, J.S., Mayne, L., Roder, H., Wand, A.J., Englander, S.W.: Determinants of protein hydrogen exchange studied in equine cytochrome c. Protein Sci. 7, 739–745 (1998)
Andersen, C.B.F., Torvund-Jensen, M., Nielsen, M.J., de Oliveira, C.L.P., Hersleth, H.P., Andersen, N.H., Pedersen, J.S., Andersen, G.R., Moestrup, S.K.: Structure of the haptoglobin-haemoglobin complex. Nature 489, 456–459 (2012)
Bamm, V.V., Tsemakhovich, V.A., Shaklai, M., Shaklai, N.: Haptoglobin Phenotypes differ in their ability to inhibit heme transfer from hemoglobin to LDL. Biochemistry 43, 3899–3906 (2004)
Ruotolo, B.T., Robinson, C.V.: Aspects of native proteins are retained in vacuum. Curr. Opin. Chem. Biol. 10, 402–408 (2006)
Hamdy, O.M., Julian, R.R.: Reflections on charge state distributions, protein structure, and the mystical mechanism of electrospray ionization. J. Am. Soc. Mass Spectrom. 23, 1–6 (2012)
Breuker, K., McLafferty, F.W.: Stepwise evolution of protein native structure with electrospray into the gas phase, 10–12 to 102 s. Proc. Natl. Acad. Sci. U. S. A. 105, 18145–18152 (2008)
Deng, L., Broom, A., Kitova, E.N., Richards, M.R., Zheng, R.B., Shoemaker, G.K., Meiering, E.M., Klassen, J.S.: Kinetic stability of the streptavidin-biotin interaction enhanced in the gas phase. J. Am. Chem. Soc. 134, 16586–16596 (2012)
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The authors acknowledge support for this work by the Natural Sciences and Engineering Research Council of Canada, the Canada Foundation for Innovation, and the Canada Research Chairs Program. They thank Dr. Jiangjiang Liu for her help during preparation of the protein samples that were used for this study.
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Sowole, M.A., Konermann, L. Comparative Analysis of Oxy-Hemoglobin and Aquomet-Hemoglobin by Hydrogen/Deuterium Exchange Mass Spectrometry. J. Am. Soc. Mass Spectrom. 24, 997–1005 (2013). https://doi.org/10.1007/s13361-013-0647-4
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DOI: https://doi.org/10.1007/s13361-013-0647-4