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Genome-wide identification and characterization of Lectin receptor-like kinase (LecRLK) genes in mungbean (Vigna radiata L. Wilczek)

  • Plant Genetics • Original Paper
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Abstract

Lectins are a diverse group of proteins found throughout plant species. Numerous lectins are involved in many important processes such as organogenesis, defense mechanism, signaling, and stress response. Although the mungbean whole genome sequence has been published, distribution, diversification, and gene structure of lectin genes in mungbean are still unknown. A total of 73 putative lectin genes with kinase domain have been identified through BLAST and HMM profiling. Furthermore, these sequences could be classified into three families, such as G-type, L-type, and C-type VrLecRLKs. 59 out of 73 VrLecRLKs were distributed on to 11 chromosomes, whereas rest could not be anchored onto any specific chromosome. Gene structure analysis revealed a varying number of exons in 73 VrLecRLK genes. Gene ontology annotations were grouped into three categories like biological processes, cellular components and molecular functions, which were associated with signaling pathways, defense responses, transferase activity, binding activity, and kinase activity. The comprehensive and systematic studies of LecRLK genes family provides a reference and foundation for further functional analysis of VrLecRLK genes in mungbean.

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  1. Poornima Singh and Awdhesh Kumar Mishra contributed equally to this work.

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  1. Department of Biotechnology, School of Life Sciences, Mahatma Gandhi Central University, Motihari, Bihar, 845401, India

    Poornima Singh

  2. Department of Biotechnology, Yeungnam University, Gyeongsan, 38541, South Korea

    Awdhesh Kumar Mishra

  3. Department of Genetics and Plant Breeding, College of Agriculture, Banda University of Agriculture and Technology, Banda, Uttar Pradesh, 210 001, India

    Chandra Mohan Singh

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PS and AKM conceived the idea and planned the work; AKM performed the GO analysis; CMS analyzed rest of the data; PS and AKM drafted the manuscript, and CMS edited the manuscript. All authors read the manuscript and approved for publication.

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Correspondence to Chandra Mohan Singh.

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Supplement Figure-1

: The proportion of G-type, L-type and C-type VrLecRLK genes in mungbean, rice, Arabidopsis and soybean. (JPG 202 kb)

Supplement Figure-2

: Number of VrLecRLK genes present on respective choromosome in mungbean. (JPG 208 kb)

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Singh, P., Mishra, A.K. & Singh, C.M. Genome-wide identification and characterization of Lectin receptor-like kinase (LecRLK) genes in mungbean (Vigna radiata L. Wilczek). J Appl Genetics 62, 223–234 (2021). https://doi.org/10.1007/s13353-021-00613-8

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