Detection and diversity of maize yellow mosaic virus infecting maize in Nigeria

A Correction to this article was published on 05 April 2020

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Abstract

Maize yellow mosaic virus (MaYMV; genus Polerovirus; family Luteoviridae) was recently characterized from maize in China and subsequently detected in mixed infection with sugarcane mosaic virus (genus Potyvirus; family Potyviridae) in sugarcane and itch grass in Nigeria. This study was conducted to understand the status and genetic diversity of MaYMV in maize fields in the northern guinea savannah region of Nigeria. A survey was conducted in 2017 and maize (n = 90) and itch grass (n = 10) plants suspected of virus infection based on appearance of mosaic and/or yellowing symptoms were sampled in Kaduna (n = 65) and Katsina (n = 35) states. The samples were screened individually by reverse transcription polymerase chain reaction using the genus-specific primers targeting poleroviruses and potyviruses Pol-G-F and Pol-G-R primers encompassing the partial P1–P2 fusion protein and coat protein genes of poleroviruses and primer pair CI-For & CI-Rev encompassing the partial cylindrical inclusion proteins of most potyviruses. A subset of amplified DNA fragments was cloned, Sanger-sequenced, and the obtained sequences were bioinformatically analyzed along with corresponding sequences from GenBank. The ~ 1.1 Kb polerovirus fragment was detected in 32.2% (29/90) of the maize samples while all 10 itch grass samples tested negative. BLASTN analysis of sequences derived from six polerovirus samples confirmed the virus identity as MaYMV. In pairwise comparisons, the MaYMV sequences derived in this study shared 97–99% nucleotide identity with sequences of other MaYMV isolates available in the NCBI GenBank. Phylogenetic analysis revealed the segregation of global MaYMV sequences into three host-independent clusters with pattern of geographic structuring.

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  • 05 April 2020

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References

  1. 1.

    Alabi OJ, Al Rwahnih M, Mekuria TA, Naidu RA. Genetic diversity of Grapevine virus A in Washington and California vineyards. Phytopathology. 2014;104:548–60.

    CAS  Article  Google Scholar 

  2. 2.

    Bernreiter A, Teijeiro RG, Jarrin D, Garrido P, Ramos L. First report of Maize yellow mosaic virus infecting maize in Ecuador. New Dis Rep. 2017;36:11.

    Article  Google Scholar 

  3. 3.

    Cadini P, Angelucci F. Analysis of incentive and disincentive for maize in Nigeria. Monitoring African Food and Agricultural Policies (MAFAP). Technical Report Series MAFAP/FAO Rome, 2013. p. 41.

  4. 4.

    Chen S, Jiang G, Wu J, Liu Y, Qian Y, Zhou X. Characterization of a novel polerovirus infecting maize in China. Viruses. 2016;8:1–17.

    Article  Google Scholar 

  5. 5.

    Domier LL. In King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ, editors. Virus taxonomy: ninth report of the international committee on the taxonomy of viruses. San Diego: Elsevier; 2012. pp. 1045–53.

  6. 6.

    Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucl Acids Res. 2004;32:1792–7.

    CAS  Article  Google Scholar 

  7. 7.

    Gonçalves MC, Godinho M, Alves-Freitas DMT, Varsani A, Ribeiro SG. First report of maize yellow mosaic virus infecting maize in Brazil. Plant Dis. 2017;101:2156.

    Article  Google Scholar 

  8. 8.

    Guadie D, Abraham A, Tesfaye K, Winter S, Menzel W, Knierim D. First report of maize yellow mosaic virus infecting maize (Zea mays) in Ethiopia. Plant Dis. 2018;102:1044.

    Article  Google Scholar 

  9. 9.

    Ha C, Coombs S, Revill PA, Harding RM, Vu M, Dale JL. Design and application of two novel degenerate primer pairs for the detection and complete genomic characterization of potyviruses. Arch Virol. 2008;153:25–36.

    CAS  Article  Google Scholar 

  10. 10.

    Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser. 1999;41:95–8.

    CAS  Google Scholar 

  11. 11.

    IITA (International Institute for Tropical Agriculture). Growing in Nigeria. Commercial crop production guide series. Information and communication support for agricultural growth in Nigeria. USAID; 2012. pp. 1–8.

  12. 12.

    Iken JE, Amusa NA. Maize research and production in Nigeria. Afr. J. Biotechnology. 2004;3(6):302–7.

    Article  Google Scholar 

  13. 13.

    King AMQ, Lefkowitz EJ, Mushegian AR, Adams MJ, Dutilh BE, Gorbalenya AE, Harrach B, Harrison RL, Junglen S, Knole NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert ML, Rubino L, Sabanadzovic S, Sanfaçon H, Siddell SG, Simmonds P, Varsani A, Zerbini FM, Davison AJ. Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses. Arch Virol. 2018;163:2601–31.

    CAS  Article  Google Scholar 

  14. 14.

    Knierim D, Deng TC, Tsai WS, Green SK, Kenyon L. Molecular identification of three distinct Polerovirus species and a recombinant Cucurbit aphid-borne yellows virus strain infecting cucurbit crops in Taiwan. Plant Pathol. 2010;59:991–1002.

    CAS  Article  Google Scholar 

  15. 15.

    Kumar S, Stecher G, Tamura K. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 2016;33:1870–4.

    CAS  Article  Google Scholar 

  16. 16.

    Krueger EN, Beckett RJ, Gray SM, Miller WA. The complete nucleotide sequence of the genome of Barley yellow dwarf virus-RMV reveals it to be a new Polerovirus distantly related to other yellow dwarf viruses. Front Microbiol. 2013;4:205.

    CAS  Article  Google Scholar 

  17. 17.

    Loto L, Maliogka VI, Katis NI. New poleroviruses associated with yellowing symptoms in different vegetable crops in Greece. Arch Virol. 2016;161:431–6.

    Article  Google Scholar 

  18. 18.

    Lim S, Yoon Y, Jang YW, Bae DH, Kim BS, Maharjan R, Yi H, Bae S, Lee BC, Lee YH, Park CY, Lee SH, Moon JS. First report of Maize yellow mosaic virus infecting Panicum miliaceum and Sorghum bicolor in South Korea. Plant Dis. 2018;102:689.

    Article  Google Scholar 

  19. 19.

    Massawe DP, Stewart LR, Kamatenesi J, Asiimwe T, Redinbaugh MG. Complete sequence and diversity of a maize-associated Polerovirus in East Africa. Virus Genes. 2018;54:432–7.

    CAS  Article  Google Scholar 

  20. 20.

    Mo XH, Qin XY, Wu J, Yang C, Duan YQ, Li FT, Chen HR. Complete nucleotide sequence and genome organization of a Chinese isolate of tobacco bushytop virus. Arch Virol. 2013;148:389–97.

    Article  Google Scholar 

  21. 21.

    Moonan F, Molina J, Mirkov TE. Sugarcane yellow leaf virus: an emerging virus that has evolved by recombination between luteoviral and poleroviral ancestors. Virology. 2000;269:156–71.

    CAS  Article  Google Scholar 

  22. 22.

    Nei M, Kumar S. Molecular evolution and phylogenetics. New York: Oxford University Press; 2000.

    Google Scholar 

  23. 23.

    Oluwafemi S, Kraberger S, Shepherd DN, Martin DP, Varsani A. A high degree of African streak virus diversity within Nigerian maize fields includes a new mastrevirus from Axonopus compressus. Adv Virol. 2014;159:2765–70.

    CAS  Google Scholar 

  24. 24.

    Palanga E, Longue RDS, Koala M, Neya JB, Traore O, Martin DP, Peterschmitt M, Filloux D, Roumagnac P. First report of maize yellow mosaic virus infecting maize in Burkina Faso. New Disease Reports. 2017;35:26.

    Article  Google Scholar 

  25. 25.

    Rzhetsky A, Nei M. A simple method for estimating and testing minimum evolution trees. Mol Biol Evol. 1992;9:945–67.

    CAS  Google Scholar 

  26. 26.

    Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987;4:406–25.

    CAS  PubMed  Google Scholar 

  27. 27.

    Yahaya A, Dangora DB, Alegbejo MJ, Alabi OJ. Identification and molecular characterization of a novel sugarcane streak mastrevirus and an isolate of the A-strain of maize streak virus from sugarcane in Nigeria. Arch Virol. 2016;162(2):597–602.

    Article  Google Scholar 

  28. 28.

    Yahaya A, Dangora BD, Al Rwahnih M, Gregg L, Kumar PL, Alegbejo MD, Alabi OJ. First report of maize yellow mosaic virus infecting sugarcane (Saccharum spp.) and itch grass (Rottboellia cochinchinensis) in Nigeria. Plant Dis. 2017;101:1335.

    Article  Google Scholar 

  29. 29.

    Yahaya A, Dangora DB, Khan AU, Zangoma AM. Detection of sugarcane mosaic diseases (SCMD) in crops and weeds associated with sugarcane fields in Sabon Gari and Makarfi local Government areas of Kaduna State. Nigeria. Int J Curr Sci. 2014;11(E):99–104.

    Google Scholar 

  30. 30.

    Yahaya A, Dangora DB, Kumar PL, Alegbejo MD, Gregg L, Alabi OJ. Prevalence and genome characterization of field isolates of sugarcane mosaic virus (SCMV) in Nigeria. Plant Dis. 2018. https://doi.org/10.1094/PDIS-08-18-1445-RE.

    Article  Google Scholar 

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Acknowledgements

Adama Yahaya is a fellow of the Norman E. Borlaug Leadership Enhancement in Agriculture Program (Borlaug-LEAP) funded by the USAID. The authors are grateful to Mallam Ibrahim Bello (Ahmadu Bello University, Zaria, Kaduna State, Nigeria) and Dr. Mona Damaj (Texas A&M AgriLife Research & Extension Center, Weslaco, TX, USA) for technical help and all the farmers in the areas surveyed. This study was funded through financial supports from the Borlaug LEAP Program, Tertiary Education Trust Fund (TETFUND), Ahmadu Bello University, Zaria, Kaduna State, Nigeria, Texas A&M AgriLife Research & Extension Center, Weslaco, the CGIAR Research Program on MAIZE, and the Amina Ado Foundation.

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Yahaya, A., Dangora, D.B., Alabi, O.J. et al. Detection and diversity of maize yellow mosaic virus infecting maize in Nigeria. VirusDis. 30, 538–544 (2019). https://doi.org/10.1007/s13337-019-00555-0

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Keywords

  • Luteoviridae
  • Polerovirus
  • MaYMV
  • Maize
  • Phylogenetic analysis