Abstract
Root-knot nematodes, Meloidogyne incognita, M. javanica and M. arenaria, cause serious yield losses in protected growing areas in Turkey. They also show a‘co-infection’ profile in fields’ soil microflora. In this study, we designed multiplex primers for detecting all three species simultaneously. Additionally, the confidence and definition of this method were tested by using mixed and large populations related to these species at different biological stages. We suggest this effective tool be used to easily identify three root-knot nematodes that will be beneficial for designing crop rotation modelling in protected growing areas in Turkey as well as quarantine requirements.
References
Abebe E, Mekete T, Thomas WK (2011) A critique of current methods in nematode taxonomy. Afr J Bıotechnol 100:312–323
Adam MAM, Phillips MS, Blok VC (2007) Molecular diagnostic key for identification of single juveniles of seven common and economically important species of root-knot nematode (Meloidogyne spp.). Plant Pathol 56:190–197
Devran Z, Söğüt MA (2009) Distribution and identification of root-knot nematodes from Turkey. J Nematol 41:128–133
Devran Z, Baysal Ö (2012) Genetic characterization of Meloidogyne ıncognita ısolates from Turkey using sequence-related amplified polymorphism (Srap). Bıologıa 67:535–539
Devran Z, Mıstanoğlu İ, Özalp T (2017) Occurrence of mixed populations of root-knot nematodes in vegetable greenhouses in Turkey, as determined by PCR screening. J Plant Dıs Protect 124:617–630
Hu M, Kan Z, Jinling L (2011) Multiplex PCR for the simultaneous identification and detection of Meloidogyne incognita, M enterolobii and M javanica using DNA extracted directly from individual galls. Phytopathology 101:1270–1277
Jones JT, Haegeman A, Danchın EGJ, Gaur HS, Helder J, Jones MGK et al (2013) Top 10 plant-parasitic nematodes in molecular plant pathology. Mol Plant Pathol 14:946–961
Karssen G, Van Hoenselaar T (1998) Revision of the genus Meloidogyne Göldi, 1982 (Nematoda: Heteroderidae) in Europe. Nematologica 44:713–788
Kiewnick S, Wolf S, Willareth M, Frey JE (2013) Identification of the tropical root-knot nematode species Meloidogyne incognita, M javanica and M arenaria using a multiplex PCR assay. Nematology 15:891–894
Mekete T, Reynolds K, Horacio DL-N, Michael EG, Niblack LT (2011) Distribution and diversity of root-lession nematode (Pratylenchus spp.) associated with Miscanthus × giganteus and Panicum virgatum used for biofuels, and species identification in a multiplex polymerase chain reaction. Nematology 13:673–686
Muniz Mde FS, Campos VP, Castagnone-Sereno P, Castro JMC, Almeida MRA, Carneiro RMDG (2008) Diversity of Meloidogyne exigua (Tylenchida: Meloidogynidae) populations from coffee and rubber tree. Nematology 10:897–910
Randig O, Bongiovanni M, Carneiro RMDG, Castagnone-Sereno P (2002) Genetic diversity of root-knot nematodes from Brazil and development of SCAR marker specific for the coffee damaging species. Genome 45:862–870
Rodríguez-Lázaro D, Hernández M (2013) Introduction to the real-time PCR. In: Rodriguez-Lazaro D (ed) Real-time PCR in food science: current technology and applications. Norfolk, UK, pp 2–19
Saeki Y, Kawano E, Yamashita C, Akao S, Nagatomo Y (2003) Detection of plant parasitic nematodes, Meloidogyne incognita and Pratylenchus coffeae by multiplex PCR using specific primers. Soıl Scı Plant Nutr 49:291–295
Sint D, Raso L, Trauqout M (2012) Advances in multiplex PCR: balancing primer efficiencies and improving detection success. Methods Ecol Evol 3:898–905
Trudgill DL, Blok VC (2001) Apomictic, polyphagous root-knot nematodes: exceptionally successful and damaging biotrophic root pathogens. Annu Rev Phytopathol 39:53–77
Zijlstra C (1997) A fast PCR assay to identify Meloidogyne hapla, M. chitwoodi, and M. fallax, and to sensitively differentiate them from each other and from M. incognita in mixtures. Fundam Appl Nematol 20:505–511
Zijlstra, C. (2000). Identification of Meloidogyne chitwoodi, M. fallax and M. hapla based on SCAR-PCR: a powerful way of enabling reliable identification of populations or individuals that share common traits. European Journal of Plant Pathology 106:283–290
Zijlstra C, Donkers-Venne DTM, Fargette M (2000) Identification of Meloidogyne incognita, M. javanica and M. arenaria using sequence characterised amplified region (SCAR) based PCR assays. Nematology 8:847–853
Acknowledgments
The research was financially supported by The Scientific and Technological Research Council of Turkey project no 112O116.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Devran, Z., Polat, İ., Mıstanoğlu, İ. et al. A novel multiplex PCR tool for simultaneous detection of three root-knot nematodes. Australasian Plant Pathol. 47, 389–392 (2018). https://doi.org/10.1007/s13313-018-0570-z
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s13313-018-0570-z