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A novel multiplex PCR tool for simultaneous detection of three root-knot nematodes

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Abstract

Root-knot nematodes, Meloidogyne incognita, M. javanica and M. arenaria, cause serious yield losses in protected growing areas in Turkey. They also show a‘co-infection’ profile in fields’ soil microflora. In this study, we designed multiplex primers for detecting all three species simultaneously. Additionally, the confidence and definition of this method were tested by using mixed and large populations related to these species at different biological stages. We suggest this effective tool be used to easily identify three root-knot nematodes that will be beneficial for designing crop rotation modelling in protected growing areas in Turkey as well as quarantine requirements.

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References

  • Abebe E, Mekete T, Thomas WK (2011) A critique of current methods in nematode taxonomy. Afr J Bıotechnol 100:312–323

    Google Scholar 

  • Adam MAM, Phillips MS, Blok VC (2007) Molecular diagnostic key for identification of single juveniles of seven common and economically important species of root-knot nematode (Meloidogyne spp.). Plant Pathol 56:190–197

    Article  CAS  Google Scholar 

  • Devran Z, Söğüt MA (2009) Distribution and identification of root-knot nematodes from Turkey. J Nematol 41:128–133

    PubMed  PubMed Central  CAS  Google Scholar 

  • Devran Z, Baysal Ö (2012) Genetic characterization of Meloidogyne ıncognita ısolates from Turkey using sequence-related amplified polymorphism (Srap). Bıologıa 67:535–539

    CAS  Google Scholar 

  • Devran Z, Mıstanoğlu İ, Özalp T (2017) Occurrence of mixed populations of root-knot nematodes in vegetable greenhouses in Turkey, as determined by PCR screening. J Plant Dıs Protect 124:617–630

    Google Scholar 

  • Hu M, Kan Z, Jinling L (2011) Multiplex PCR for the simultaneous identification and detection of Meloidogyne incognita, M enterolobii and M javanica using DNA extracted directly from individual galls. Phytopathology 101:1270–1277

    Article  PubMed  CAS  Google Scholar 

  • Jones JT, Haegeman A, Danchın EGJ, Gaur HS, Helder J, Jones MGK et al (2013) Top 10 plant-parasitic nematodes in molecular plant pathology. Mol Plant Pathol 14:946–961

    Article  PubMed  Google Scholar 

  • Karssen G, Van Hoenselaar T (1998) Revision of the genus Meloidogyne Göldi, 1982 (Nematoda: Heteroderidae) in Europe. Nematologica 44:713–788

  • Kiewnick S, Wolf S, Willareth M, Frey JE (2013) Identification of the tropical root-knot nematode species Meloidogyne incognita, M javanica and M arenaria using a multiplex PCR assay. Nematology 15:891–894

    Google Scholar 

  • Mekete T, Reynolds K, Horacio DL-N, Michael EG, Niblack LT (2011) Distribution and diversity of root-lession nematode (Pratylenchus spp.) associated with Miscanthus × giganteus and Panicum virgatum used for biofuels, and species identification in a multiplex polymerase chain reaction. Nematology 13:673–686

    Article  CAS  Google Scholar 

  • Muniz Mde FS, Campos VP, Castagnone-Sereno P, Castro JMC, Almeida MRA, Carneiro RMDG (2008) Diversity of Meloidogyne exigua (Tylenchida: Meloidogynidae) populations from coffee and rubber tree. Nematology 10:897–910

    Article  Google Scholar 

  • Randig O, Bongiovanni M, Carneiro RMDG, Castagnone-Sereno P (2002) Genetic diversity of root-knot nematodes from Brazil and development of SCAR marker specific for the coffee damaging species. Genome 45:862–870

    Article  PubMed  CAS  Google Scholar 

  • Rodríguez-Lázaro D, Hernández M (2013) Introduction to the real-time PCR. In: Rodriguez-Lazaro D (ed) Real-time PCR in food science: current technology and applications. Norfolk, UK, pp 2–19

    Google Scholar 

  • Saeki Y, Kawano E, Yamashita C, Akao S, Nagatomo Y (2003) Detection of plant parasitic nematodes, Meloidogyne incognita and Pratylenchus coffeae by multiplex PCR using specific primers. Soıl Scı Plant Nutr 49:291–295

    Article  CAS  Google Scholar 

  • Sint D, Raso L, Trauqout M (2012) Advances in multiplex PCR: balancing primer efficiencies and improving detection success. Methods Ecol Evol 3:898–905

    Article  PubMed  PubMed Central  Google Scholar 

  • Trudgill DL, Blok VC (2001) Apomictic, polyphagous root-knot nematodes: exceptionally successful and damaging biotrophic root pathogens. Annu Rev Phytopathol 39:53–77

    Article  PubMed  CAS  Google Scholar 

  • Zijlstra C (1997) A fast PCR assay to identify Meloidogyne hapla, M. chitwoodi, and M. fallax, and to sensitively differentiate them from each other and from M. incognita in mixtures. Fundam Appl Nematol 20:505–511

    Google Scholar 

  • Zijlstra, C. (2000). Identification of Meloidogyne chitwoodi, M. fallax and M. hapla based on SCAR-PCR: a powerful way of enabling reliable identification of populations or individuals that share common traits. European Journal of Plant Pathology 106:283–290

  • Zijlstra C, Donkers-Venne DTM, Fargette M (2000) Identification of Meloidogyne incognita, M. javanica and M. arenaria using sequence characterised amplified region (SCAR) based PCR assays. Nematology 8:847–853

    Article  Google Scholar 

Download references

Acknowledgments

The research was financially supported by The Scientific and Technological Research Council of Turkey project no 112O116.

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Correspondence to Zübeyir Devran.

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Devran, Z., Polat, İ., Mıstanoğlu, İ. et al. A novel multiplex PCR tool for simultaneous detection of three root-knot nematodes. Australasian Plant Pathol. 47, 389–392 (2018). https://doi.org/10.1007/s13313-018-0570-z

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