Animals and Ethical Permits
Colonies of hemizygous YAC128 (line HD53; mHTT high expresser), homozygous YAC128 (line HD55; mHTT low expresser), and WT mice, all with FVB/N background, were housed in the housing Facility of the CNC, Coimbra, Portugal, and at UBC, Vancouver, Canada. Temperature was controlled (22–23 °C) and a 12-h light/dark cycle maintained. Food and water were available ad libitum. All mouse experiments were carried out in accordance with the guidelines of the Institutional Animal Care and Use of Committee and the European Community directive (2010/63/EU) and protocols approved by the Faculty of Medicine, University of Coimbra (ref ORBEA_189_2018/11042018) and UBC Committee (ref A16-0130) on Animal Care and the Canadian Council on Animal Care. All efforts were made to minimize animal suffering and to reduce the number of animals used.
Primary Neuronal Cultures
Primary cortical, striatal, and cortico-striatal co-cultures were generated from the offspring of crosses between wild-type (WT) mice (used as controls) or between homozygous YAC128 mice (line HD55) males or hemizygous YAC128 mice (line HD53) males and WT females from the same genetic background (FVB/N). Embryos from timed pregnant females were collected on gestational day E15.5–16.5.
For cortico-striatal co-cultures, brains were removed and transferred to Hibernate E medium (Thermo Fisher Sci., catalog no. A1247601) for up to 24 h. At this time, the samples from the remaining embryonic tissues were genotyped. The cortex and striatum were micro-dissected in ice-cold Hank’s balanced salt solution (HBSS; Gibco), then diced and pooled per genotype. The tissues were then dissociated with 0.05% trypsin-EDTA (Thermo Fisher Sci., catalog no. 25300054), which was then neutralized with 10% fetal bovine serum (FBS) in Neurobasal medium (Thermo Fisher Sci., catalog no. 21103049) and DNAse I treatment (153 U/ml). The dissociated tissues were centrifuged at 145×g for 5 min, and the pellet was then triturated with a pipette five to six times. Cells were seeded on poly-D-lysine-coated plates in Neurobasal media supplemented with 2% B27 (Thermo Fisher Sci., catalog no. 17504044), 100 U/ml penicillin-streptomycin (Gibco, catalog no. 15140122), and 2 mM L-glutamax (Thermo Fisher Sci., catalog no. 35050061). The cells were fed with one-third volume fresh medium every fifth day.
To obtain pure cortical and striatal neurons, tissue was microdissected in HBSS supplemented with 0.3% fatty acid free BSA (Sigma-Aldrich, catalog no. A8806). Tissue from embryos with the same genotype were pooled and digested with 0.003% trypsin in HBSS, then mechanically digested. Soybean (Sigma-Aldrich, catalog no. T9128) was used to block the trypsin. Neurons were plated at a density of either 130 × 103 cells/cm2 (high) or 85 × 103 cells/cm2 (low) on poly-D-lysine (0.1 mg/ml)-coated plates and maintained in Neurobasal medium supplemented with 2% B27, 1 mM glutamine, and 20 μg/ml gentamicin (Thermo Fisher Sci., catalog no. 15750060). Cultures were maintained at 37 °C in a humidified incubator with 5% CO2/95% air. After 3 days in vitro (DIV) half of the medium was replaced with fresh supplemented Neurobasal medium containing 5-fluoro-2′-deoxyuridine (5-FdU, 5 μM final concentration in the medium; Sigma-Aldrich, catalog no. F0503) to reduce dividing non-neuronal cells. At DIV 7 half of the medium was again replaced with fresh medium, and cells were used at DIV12. Striatal cultures used for single cell measurements displayed 82% of GABA (gamma-aminobutyric acid)-positive plus DARPP-32 (dopamine and cAMP regulated phosphoprotein of 32 kDa)-positive neurons [20].
Neuronal Transfection
Striatal neurons were transfected with pDsRed2-Mito Vector (MitoDsRed; Clontech, catalog no. 632421) at 8 DIV using the calcium phosphate precipitation method as previously described [21]. Briefly, plasmid was diluted in TE (in mM: 1 Tris-HCl pH 7.3, 1 mM EDTA), followed by the addition of CaCl2 (in mM: 2.5 CaCl2 in 10 HEPES, pH 7.2). The DNA solution was carefully added to 2× HEBS (in mM: 12 dextrose, 50 HEPES, 10 KCl, 280 NaCl and 1.5 Na2HPO4.2H2O, pH 7.2) while bubbling air through the solution. The mixture was then incubated for 25 min at room temperature. The precipitates were added dropwise to the coverslips in Neurobasal medium and incubated for 80 min at 37 °C. The DNA–Ca2+-phosphate precipitates were dissolved with freshly made dissolution medium (Neurobasal medium with 20 mM HEPES, pH 6.8) and incubated for 7 min at room temperature. The transfected neurons were then washed with Neurobasal medium and transferred back to their original dishes containing conditioned culture medium until DIV12.
Lymphoblast Cultures and Transfection
Lymphoblasts from a control subject (GM02174, CAG repeat 15/15) and an HD patient (NA04724, CAG repeat 67/15), obtained from the Coriell Institute, were grown in RPMI medium (Thermo Fisher Sci. 11875093) containing 10% FBS, 2 mM L-glutamax, and 100 U/ml penicillin-streptomycin. The lymphoblasts were passaged 1:3 every 5 to 6 days. For conducting experiments, the lymphoblasts were collected and centrifuged at 145×g for 5 min. The cell pellet was resuspended in fresh growth medium. Lymphoblasts between passage number 5 and 20 were used in each experiment.
S1R depletion was induced by treating with S1R-directed siRNA duplexes (Origene, cat no. SR426072). siRNA transfection was performed in antibiotic-free growth medium using the Polyplus JETPRIME transfection protocol as per manufacturer’s instructions (Polyplus). Forty-eight hours after transfection, the cells were subjected to pridopidine treatment and/or oxidative stress challenge. S1R knockdown efficiency was determined by immunoblot analysis.
Human Neural Stem Cell Culture
Neural stem cells (NSCs) were differentiated from heterozygous human-induced pluripotent stem cells (iPSC), HD4-iPSC, with a normal (19 CAG repeats) and an expanded allele (72 CAG repeats) generated by Park and colleagues [22], generously provided by Prof. George Daley (Harvard Medical School, Boston, Massachusetts, USA) and control AMS4-iPSC generated and characterized by Pereira de Almeida and collaborators [23] (Center for Neuroscience and Cell Biology, University of Coimbra, Portugal). iPSCs were maintained in Geltrex® (Thermo Fisher Sci., catalog no. A1413202) coated 6-well plates until 90% confluence, then the neural induction protocol was applied. Neural differentiation was based on dual SMAD inhibition with SB431542 (Lefty/Activin/transforming growth factor beta—TGFβ inhibitor; Tocris Bioscience, catalog no. 1614), dorsomorphin (bone morphogenetic protein—BMP inhibitor; Tebu-bio, catalog no. 04–0024), and XAV-939 (β-catenin-transcription inhibitor and axin stabilizing agent; Sigma-Aldrich, catalog no. X3004), as previously described [24,25,26]. Neural induction medium (N2 medium) consisted of a 1:1 mixture of DMEM/F12 (Thermo Fisher Sci., catalog no. 32500043) and Neurobasal, and supplemented with 1% N2 (100×) (Thermo Fisher Sci., catalog no. 17502048), 2 mM L-glutamine, 100 μM nonessential amino acids (Sigma-Aldrich, catalog no: M7145), 100 μM 2-mercaptoethanol (Sigma-Aldrich, catalog no. M6250), 1% penicillin/streptomycin (Thermo Fisher Sci., catalog no. 15140122), and 2% B27. Neural induction occurred between day 0 and days 12–15. From day 0 to day 5, cells were maintained in iPSC medium without FGF2 and incubated with 5 μM dorsomorphin and 10 μM SB431542. Medium was changed every other day. From day 5 to day 12, the medium was gradually replaced by 75% KnockOut Serum Replacement + 25% N2 medium, 50% iPSC + 50% N2 medium up to 100% N2 medium with 5 μM dorsomorphin, 10 μM SB431542, and 1 µM XAV939 [24,25,26]. Between days 12 and 15, fields full of rosettes became morphologically visible. To allow the cells to differentiate, cells were replated in Geltrex® coated 12-well plates. For detaching, 500 µl of 1× Accutase® (Thermo Fisher Sci., catalog no. A1110501) was added to the plate and incubated at 37 °C in 5% CO2, for 15–20 min. Accutase was diluted in DMEM/F12 medium pre-warmed to 37 °C. Cells were collected and spun for 3 min at 200×g at room temperature, and resuspended in 200 µl of media into 12-well plates. Cells were allowed to adhere for 30 min, and then 300 μL N2 medium, supplemented with 10 μM Y-27632 (Thermo Fisher Sci.), 10 ng/ml FGF2 (Tebu-bio, catalog no. 100-18B-A), and 10 ng/ml EGF (Tebu-bio, catalog no. AF-100–15-A), was added. Cells were incubated overnight at 37 °C, 5% CO2. Cells were passaged every 2–3 days for no more than 10–12 passages. Expression of the neural lineage marker proteins nestin and SOX2 was confirmed by immunocytochemistry upon each differentiation process (data not shown).
Pridopidine Incubations
Pridopidine was provided by Prilenia Therapeutics. A working stock concentration of 10 mM was prepared in sterile deionized water and stored at 4 °C for up to 2 weeks. Pridopidine incubations were done for 24 h in all cellular models used unless otherwise stated (Fig. 3h). Final working concentrations are described in figures and figure legends.
Immunocytochemistry and Co-localization Analysis
MitoDsRed-transfected striatal neurons were fixed with 4% paraformaldehyde (pre-warmed at 37 °C) for 20 min, permeabilized in 0.2% Triton X-100 in PBS for 2 min and blocked for 1 h at room temperature in 3% (w/v) BSA in PBS. IP3R3 antibody (1:1000 prepared in 3% (w/v) BSA in PBS; EMD Millipore, catalog no. AB9076) and S1R antibody (1:500 prepared in 3% (w/v) BSA in PBS; Santa Cruz Biotechnology, catalog no. sc-137075) were incubated overnight at 4 °C. Neurons were incubated with 4 μg/mL Hoechst 33342 (Thermo Fisher Sci., catalog no. H1399) for 20 min and mounted using Mowiol 40-88 (Sigma-Aldrich, catalog no. 324590). Confocal images were obtained as stacks, at 0.46-µm intervals along the z axis, using a Plan-Apochromat/1.4NA 63× lens on an Axio Observer.Z1 confocal microscope (Zeiss Microscopy, Germany) with Zeiss LSM 710 software. FIJI (ImageJ, National Institute of Health, USA) was used for image analysis. Z-stack images were normalized for background (rolling ball radius of 9 for mitochondria and 25 for IP3R3), and the FindFoci function was used to identify peak intensity regions in order to extract mitochondria-specific fluorescence [27]. To optimally resolve individual mitochondria, a threshold was applied followed by the Analyze Particles function to trace mitochondrial outlines. Mitochondria aspect ratio (the ratio between the major and minor axes of mitochondria) was used as an index of mitochondria length. For S1R and IP3R3 fluorescence, a threshold was set similarly to the one described above, and Integrated Density was obtained. S1R and IP3R3 Integrated Density was calculated inside of mitochondrial ROI selection to obtain co-localization with mitochondria.
Transmission Electron Microscopy and Analysis
Striatal neurons were washed and fixed in 2.5% (V/V) glutaraldehyde in 0.1 M phosphate buffer and pellet before sectioning. The ultrathin sections were prepared using Leica Ultracut UCT (Leica, Vienna, Austria) and contrasted with uranyl acetate and lead citrate. Sections were observed in a Tecnai 12 BioTWIN transmission electron microscope (FEI Company, Eindhoven, The Netherlands) at 100 kV. Digital images were taken using a magnification of 26,500× in a Veleta camera (Olympus Soft imaging Solutions, GmbH, Münster, Germany). All mitochondria of 6–7 different cells were snapped per condition and per independent experiment. Number of mitochondria-ER contacts sites (MERCS), MERCS length, ER and mitochondria profile areas, ER width, and mitochondria aspect ratio were quantified. Number of MERCS per mitochondria was obtained by dividing number of MERCS per number of mitochondria profiles. Percentage of mitochondria surface covered by ER was measured by dividing the MERCS length by mitochondria perimeter and multiplying by 100. MERCS were considered when the distance between ER and mitochondria < 40 nm.
Mitochondrial Movement Analysis
MitoDsRed-transfected striatal neurons were washed and incubated in Na+ medium (in mM: 140 NaCl, 5 KCl, 1 CaCl2, 1 MgCl2, 10 Glucose, 10 HEPES, pH 7.4) at 37 °C for mitochondrial movement studies. Neuronal projections were imaged every 5 s for a total of 145 frames, using a 63× objective with NA = 1.4, on a Carl Zeiss Axio Observed Z1 inverted confocal microscope using the CSU-X1M spinning disc technology (Zeiss, Jena, Germany). Mitochondrial movement analysis was performed using the Kymograph Macro [28] in FIJI. Briefly, histograms were matched to the first frame to correct fluorescence variations using Bleach Correction plugin developed by Miura and Rietdorf, and time lapse-dependent x-y drift was corrected by applying the TurboReg plugin. ROIs were designated using a segmented line following mitochondria trajectory across projections. Kymographs generated in a x-y dimension (distance vs time) were used to obtain the slope from which mitochondrial velocity was calculated.
Seahorse Oxygen Respirometry
Oxygen consumption rate (OCR) in WT and hemizygous YAC128 cortical/striatal co-cultures and NSCs was measured using Seahorse XFe-24/96 flux analyzers (Seahorse Bioscience, Billerica, MA, USA) following the manufacturer’s instructions. Cortical-striatal primary neurons were cultured in Seahorse XF96 V3 cell culture microplates (Agilent, catalog no. 101085-004) at a density of 20,000 cells/well. NSCs were seeded 30,000 cells/well onto an XF24 cell culture microplate (Agilent, catalog no. 102340–100) coated with Geltrex® and allowed to adhere for 24 h at 37 °C. Pridopidine (0.1, 1, and/or 5 µM) was added, when indicated in the graphs, 24 h before the experiment. The sensor cartridge plate was incubated with immersed sensors in a non-CO2 incubator at 37 °C for ~ 16 h (overnight). Prior to the experiments, cells were washed and incubated with XF assay medium (DMEM; Thermo Fisher Sci., catalog no. D5030) supplemented with glucose (20 mM for neurons; 17.5 mM for NSC), 1 mM pyruvate and 2 mM glutamine, pH = 7.4, at 37 °C. The cell medium was aspirated gently to avoid disturbing cell monolayers. Baseline measurements of OCR were sampled prior to sequential injection of mitochondrial complex V inhibitor oligomycin (1 µM; Sigma-Aldrich, catalog no. 75351), protonophore carbonyl cyanide-4-phenylhydrazone (FCCP) (0.5 µM for neurons and 0.3 µM for NSCs; Sigma-Aldrich, catalog no. C2920) and antimycin A (0.5 µM for neurons and 1 µM for NSCs; Sigma-Aldrich, catalog no. A8674) plus rotenone (0.5 µM for neurons and 1 µM for NSCs; Sigma-Aldrich, catalog no. R8875) to complete inhibit mitochondrial respiration. Accordingly, mitochondrial basal respiration, maximal respiration, and ATP production were automatically calculated and recorded by the Seahorse software. Data was normalized for protein levels.
Mitochondrial Membrane Potential
Mitochondrial membrane potential (Δψm) was assessed in cortical and striatal neurons using the positively changed fluorescent probe TMRM (tetramethylrhodamine methyl ester) (Thermo Fisher Sci., catalog no. T668) and in cortical/striatal co-cultures and lymphoblasts using an equivalent probe, TMRE (tetramethylrhodamine ethyl ester) (Abcam, catalog no. ab113852).
TMRM Assay: Cortical and striatal neurons previously treated, when indicated, with pridopidine (0.1 and 1 μM; 24 h) were incubated with 150 nM TMRM (quenching conditions) in Na+ medium for 30 min, at 37 °C. Under these conditions, retention of TMRM by mitochondria was studied to estimate changes in Δψm. Basal fluorescence (503-nm excitation and 525-nm emission) was recorded using a microplate reader Spectrofluorometer Gemini EM (Molecular Devices, USA) for 4 min, followed by the addition of 2.5 μM FCCP plus 2.5 μg/mL oligomycin to produce maximal mitochondrial depolarization and mitochondrial probe release. TMRM release was calculated based in the differences in fluorescence before and after addition of oligomycin/FCCP.
TMRE Assay: Primary neurons and lymphoblasts in suspension were cultured in 6-well plates. The cells were pretreated with/without pridopidine and hydrogen peroxide (H2O2) as per experimental condition followed by incubation with 25 nM TMRE diluted in complete cell culture media for 15 min at 37 °C. Primary neurons were detached from the plate using 0.05% trypsin-EDTA and collected in 10% FBS-containing PBS and centrifuged at 1000 rpm for 5 min. The lymphoblasts also were centrifuged at 1000 rpm for 5 min. The cell pellets were re-suspended in 1% FBS-containing PBS and subjected to FACS analysis using Fortessa Flow cytometer (BD Biosciences) with a PE filter (545 nm).
Measurement of Mitochondrial H2O2 Levels
Coverslip-plated cortical and striatal neurons were pre-treated with pridopidine (0.1 and 1 μM) for 24 h and incubated with the Mitochondria peroxy yellow 1 (MitoPY1) probe (8 μM; Tocris Bioscience, catalog no. 4428) in Na+ medium for 30 min at 37 °C. After incubation, MitoPY1 was washed out and neurons imaged at 1-min intervals for 30 min using LCI PlanNeofluar/1.3NA 63× lens on a Carl Zeiss Axio Observed Z1 inverted confocal microscope using the CSU-X1M spinning disc technology with Zen Black 2012 software (Zeiss, Jena, Germany). Fluorescence was recorded at 503-nm excitation and enhanced emission at 528 nm [29]. After basal reading for 10 min, neurons were stimulated with antimycin A (2 μM). Specific MitoPY1 fluorescence in mitochondria was confirmed after co-incubating cells with MitoTracker Deep Red (300 nM; Thermo Fisher Sci., catalog no. M22426). Fluorescence intensity at each time point was analyzed with FIJI using the time series analyzer plugin (v 3.0) (Balaji J. 2007).
NSCs were plated at 30,000 cells/well in 96-well assay plates coated with Geltex® for 24 h at 37 °C. Afterwards, NSCs were incubated for another 24 h with 1 μM pridopidine. Prior to acquisition, cells were washed with HBSS (in mM: 137.9 NaCl, 1.3 CaCl2, 0.5 MgCl2-6H2O 0.4 MgSO4-7H2O, 5.3 KCl, 0.4 KH2PO4, 4.2 NaHCO3, 0.3 Na2HPO4, 5.6 D-glucose, at pH 7.4) and incubated for 20 min with 10 μM MitoPY1 at 37 °C and 5% CO2. MitoPY1 fluorescence was obtained with a Microplate Spectrofluorometer Gemini EM (Molecular Devices, USA) using wavelength parameters described above. Basal levels were measured for 10–15 min followed by exposure to 3 μM myxothiazol (mitochondrial complex III inhibitor; Sigma-Aldrich, catalog no. T5580) and measured for an additional 30 min. The results were calculated as RFU per 30,000 cells.
In isolated mitochondria, H2O2 levels were measured using the Amplex Red-horseradish peroxidase method. Briefly, 5 µg of isolated mitochondria was resuspended in mitochondrial reaction buffer (MRB, in mM: 100 sucrose, 100 KCl, 2 KH2PO4, 5 HEPES, 0.01 EGTA, 3 succinate, 3 glutamate, 0.1 ADP-K, pH 7.4) supplemented with 10 μM Amplex Red reagent (Thermo Fisher Sci., catalog no. A12222) and freshly prepared 0.5 units/mL horseradish peroxidase (Sigma-Aldrich, catalog no. 77332). The homogenate was then dispensed into a 96-multiwell plate, and fluorescence was measured in a spectrofluorometer microplate reader by excitation at 570 nm and emission at 585 nm every 30 s, for 20 min. After 10 min of basal reading, mitochondria were challenged with antimycin A (2 µM). Results were analyzed as time-dependent changes in fluorescence.
CellROX Assay
H2O2 (9.8 M stock) was dissolved in cell culture medium prior to experimentation. Primary neurons and lymphoblasts cultured on PDL-coated plates were treated with H2O2 (0–1 mM) for up to 6 h. Oxidative stress was measured using the CellROX red reagent (Life Technologies, catalog no. C10422). Cells were treated with 5 μM CellROX red in complete medium, then incubated for 30 min. The cells were then washed with PBS and imaged on a Zeiss Axiovert inverted microscope (Zeiss, Jena, Germany) using a 10× objective. Exposure settings were maintained for all samples. Eight random fields were sampled, and the fluorescence intensity was measured using ImageJ software and normalized to the DAPI signal.
MTS Assay
Cell viability was assessed on lymphoblasts using the MTS assay, a measure of mitochondrial function, and cell survival. The assay was performed according to the manufacturer's instructions (Promega, catalog no. G1112). Control and HD lymphoblasts were treated with 5 μM pridopidine and 0.1 mM H2O2 as indicated in figure legends. In the day of experiment, MTS reagent was added to the culture media (1:10) and incubated at 37 °C for 4 h. Then, lymphoblasts were centrifuged at 145×g for 5 min and media was collected. The absorbance of the formazan dye produced by viable cells was quantified in the medium at OD = 490 nm.
Immunoblotting
Cells were homogenized in RIPA buffer (50 mM Tris-HCl pH 7.4, 150 mM NaCl, 0.5% sodium deoxycholate, 1% Triton X-100, 0.1% SDS, 1 mM EDTA, 2 mM sodium orthovanadate, 50 mM sodium fluoride, 1 mM PMSF, 10 μg/ml aprotinin, and 10 μg/ml leupeptin). The cell lysates were transferred to microtubes and incubated for 30 min on ice, then centrifuged at 20,800×g for 15 min at 4 °C. Proteins (25–50 μg cell lysate) were resolved by SDS-PAGE and transferred to a polyvinylidene difluoride membrane, which was then blocked for 1 h at room temperature in Odyssey blocking buffer diluted 1:1 with PBS. The membranes were probed overnight at 4 °C with the relevant primary antibodies followed by three washes with 0.1% Tween in PBS (PBST), and re-probing with appropriate fluorescently tagged secondary antibodies. After three washes with PBST, the membranes were scanned and quantified using an Odyssey fluorescent scanner (LICOR Biosciences).
Antibodies used for immunoblotting analysis include anti-rabbit Nrf2 (Cell signal tech, #12721, 1:1000), anti-mouse S1R (Santa Cruz Biotech, SC-137075, 1:500), and anti-mouse actin (Sigma-Aldrich, A5441, 1:20,000).
Gene Expression Analysis by qRT-PCR
RNA extraction and qRT-PCR procedures were performed as previously described [30]. Briefly, RNA was extracted from cultured lymphoblasts using PureLink mini RNA extraction kit (Thermo Fisher Sci., catalog no. 12183018A). RNA (500 ng) was reverse transcribed using SuperScript III Reverse Transcriptase (Thermo Fisher Sci., catalog no. 18080093) according to manufacturer’s instructions. The qPCR was performed using the ABI Prism 7500 Sequence Detection System (Applied Biosystems). Each sample was run in triplicate. Gene expression was normalized to Rpl13a or UBC mRNA.
In Vivo Study Design
About 1.5-month-old WT and hemizygous YAC128 mice (males and females in equal proportion) were divided into four groups. One WT mice group and one YAC128 mice group received pridopidine treatment (30 mg/kg dissolved in a volume of 100 µL/25 g), whereas the two remaining groups received an equivalent volume of vehicle (sterile water) by oral gavage for 45 consecutive days, until 3 months of age. Mice were divided 4 animals per cage enriched in corn-husk nesting material and paper rolls, each cage representing one individual experiment, for a total of 9 animals per group. Pridopidine was dissolved in deionized sterile water. Animals were weighed every week and the volume of treatment adjusted accordingly. Mice were behaviorally tested in rotarod immediately before commencing treatment and on the day before finishing treatment. Tests were conducted blindly at a set time during the day. Mice were sacrificed 24 h after administration of the final pridopidine dose, and mitochondria isolated from the striatum.
Rotarod Analysis
Motor learning and coordination were assessed on a rotarod apparatus (Letica Scientific Instruments, Panlab, Barcelona, Spain). Mice were allowed to adapt to the behavior room for 2 h before the behavior studies. Procedures were consistent for all subjects and tests made at minimal noise levels. The training phase consisted of four trails per day (120 s each) at 1 h intervals, at a fixed speed of 14 rpm. In this test, mice must learn to run when placed on a constant rotating rod to prevent them from falling. Once the task is learned, the accelerating rotarod can be used to assess motor coordination and balance. The testing phase was carried out the following day on an accelerating rotarod from 4 to 40 rpm over 5 min and consisted of 3 trials, spaced 2 h apart. Rotarod scores are the average of 3 trials. Experiments were performed blinded for genotype and treatment.
Isolation of Functional Mitochondria
The striatum was dissected from mouse brains washed once in ice-cold mitochondria isolation buffer (MIB: in mM, 225 mannitol, 75 sucrose, 1 EGTA, 5 HEPES–KOH, pH 7.2). Striatal mitochondria were isolated using discontinuous Percoll density gradient centrifugation as previously described [31]. Briefly, striata were transferred to a 7-mL Dounce tissue grinder (Kontes Glass Co., Vineland, NJ, USA) and homogenized 8 times in 0.8 mL MIB supplemented with 1 mg/mL fatty acid free BSA using a pestle with 0.07–0.12-mm clearance, followed by another 8 strokes with a pestle with 0.02–0.056-mm clearance. The final homogenate was then centrifuged at 1100×g for 2 min, at 4 °C. The supernatant was collected and mixed with freshy made 80% Percoll (GE Healthcare, catalog no. 17-5445-02) prepared in mitochondrial dilution buffer (MDB: in mM, 1000 sucrose, 50 HEPES–KOH, 10 EGTA, pH 7.0), to create a 9.5% Percoll solution, which was further carefully layered on the top of freshly made 10% Percoll (diluted from 80% Percoll in MIB). The mitochondrial fraction was pelleted by centrifugation at 18,500×g for 10 min at 4 °C. The pellet was then resuspended in 1 mL of mitochondria washing buffer (MWB: in mM, 250 sucrose, 5 HEPES–KOH, 0.1 EGTA, pH 7.2) and centrifuged at 10,000×g for 5 min at 4 °C. Mitochondrial pellet was again resuspended in a small volume of ice-cold MWB, to create a concentrated mitochondria solution, and kept on ice for further analysis for a maximum of 2 h. Protein content of isolated mitochondria was quantified by Bio-Rad assay (Bio-Rad, catalog no. 5000006).
Mitochondrial Complex Activity
Five microgram of isolated mitochondria diluted in mitochondrial assay solution (MAS: in mM, 70 sucrose, 220 mannitol, 10 K2HPO4, 5 MgCl2, 1 EGTA, 2 HEPES–KOH) supplemented with 0.2% (w/v) fatty acid-free BSA, 10 mM pyruvate, 2 mM malate, and 4 µM FCCP were seeded in poly(ethyleneimine)-coated (1:15,000; Sigma-Aldrich, catalog no. 03880) XF24 seahorse plates by centrifugation at 2000×g for 18 min, at 4 °C [31, 32]. After centrifugation, the volume was adjusted to 450 µL and the Seahorse plate was equilibrated in a humidified CO2-free incubator at 37 °C for 10–12 min. Sequential electron flow through of the electron transport chain was evaluated after sequential injection of rotenone (2 μM; complex I inhibitor), succinate (10 mM; complex II substrate), antimycin A (4 μM; complex III inhibitor), and ascorbate/TMPD (N,N,N′,N′-tetramethyl p-phenylenediamine) (10 mM/100 μM; electron donors to cytochrome C/complex IV) [31, 32].
Statistical Analysis
Results are expressed as mean ± SEM (standard error of the mean) of the number of independent experiments or animals indicated in figure legends. Comparisons between multiple groups were performed by non-parametric one-way analysis of variance (ANOVA) using the Kruskal-Wallis test followed by Dunn multiple comparison test. Correction for multiple comparisons was done by two-way ANOVA followed by Tukey’s post hoc test. Comparison between two groups was performed by non-parametric Mann-Whitney test. The F-test was performed to analyze the interaction term. Outliers were detected using ROUT method (Q = 1%). Significance was accepted at p < 0.05. All analyses were performed using Prism software (GraphPad Version 8.0).