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Tumor Biology

, Volume 36, Issue 12, pp 9829–9837 | Cite as

Identification of RAB2A and PRDX1 as the potential biomarkers for oral squamous cell carcinoma using mass spectrometry-based comparative proteomic approach

  • Kaushik Kumar Dey
  • Ipsita Pal
  • Rashmi Bharti
  • Goutam Dey
  • B. N. Prashanth Kumar
  • Shashi Rajput
  • Aditya Parekh
  • Sheetal Parida
  • Priyanka Halder
  • Indranil Kulavi
  • Mahitosh Mandal
Research Article

Abstract

Despite the recent advances in diagnostic and therapeutic strategies, oral squamous cell carcinoma (OSCC) remains a major health burden. Protein biomarker discovery for early detection will help to improve patient survival rate in OSCC. Mass spectrometry-based proteomics has emerged as an excellent approach for detection of protein biomarkers in various types of cancers. In the current study, we have used 4-Plex isobaric tags for relative and absolute quantitation (iTRAQ)-based shotgun quantitative proteomic approach to identify proteins that are differentially expressed in cancerous tissues compared to normal tissues. The high-resolution mass spectrometric analysis resulted in identifying 2,074 proteins, among which 288 proteins were differentially expressed. Further, it was noticed that 162 proteins were upregulated, while 125 proteins were downregulated in OSCC-derived cancer tissue samples as compared to the adjacent normal tissues. We identified some of the known molecules which were reported earlier in OSCC such as MMP-9 (8.4-fold), ZNF142 (5.6-fold), and S100A7 (3.5-fold). Apart from this, we have also identified some novel signature proteins which have not been reported earlier in OSCC including ras-related protein Rab-2A isoform, RAB2A (4.6-fold), and peroxiredoxin-1, PRDX1 (2.2-fold). The immunohistochemistry-based validation using tissue microarray slides in OSCC revealed overexpression of the RAB2A and PRDX1 gene in 80 and 68 % of the tested clinical cases, respectively. This study will not only serve as a resource of candidate biomarkers but will contribute towards the existing knowledge on the role of the candidate molecules towards disease progression and therapeutic potential.

Keywords

iTRAQ Oral squamous cell carcinoma OSCC RAB2A PRDX1 

Notes

Acknowledgements

We thank the Indian Council of Medical Research (3/2/2/207/2013/NCD-III) and the Department of Science and Technology (SR/SO/BB-58/2008) Government of India for financial support.

Ethical approval

All procedures performed in studies involving human participants were in accordance with the ethical standards of the institutional and/or national research committee and with the 1964 Helsinki declaration and its later amendments or comparable ethical standards.

Consent

Informed consent was obtained from all individual participants included in the study.

Conflicts of interest

None

Supplementary material

13277_2015_3758_MOESM1_ESM.docx (14 kb)
ESM 1 (DOCX 13 kb)
13277_2015_3758_MOESM2_ESM.pdf (546 kb)
ESM 2 (PDF 545 kb)
13277_2015_3758_MOESM3_ESM.pdf (2.5 mb)
ESM 3 (PDF 2,550 kb)

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Copyright information

© International Society of Oncology and BioMarkers (ISOBM) 2015

Authors and Affiliations

  • Kaushik Kumar Dey
    • 1
  • Ipsita Pal
    • 1
  • Rashmi Bharti
    • 1
  • Goutam Dey
    • 1
  • B. N. Prashanth Kumar
    • 1
  • Shashi Rajput
    • 1
  • Aditya Parekh
    • 1
  • Sheetal Parida
    • 1
  • Priyanka Halder
    • 1
  • Indranil Kulavi
    • 2
  • Mahitosh Mandal
    • 1
  1. 1.School of Medical Science and TechnologyIndian Institute of TechnologyKharagpurIndia
  2. 2.Bankura Sammilani Medical CollegeBankuraIndia

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