Patients, tumor samples, and immunohistochemistry (IHC) staining
This study was approved by the Research Ethics Board, and informed consent was obtained from all patients. A consecutive series of 30 tongue squamous cell carcinoma patients including 21 male and 9 female patients (between 24 and 85 years old with an average 59.7 years old) who underwent surgery between March 2011 and December 2013 was involved in this study. Patients could be classified according to tumor TNM stage system and shown in Table 1. None of the patients were treated with radiotherapy, chemotherapy, or other therapies before surgery. Specimens of tumor and of normal adjacent tissues were obtained, frozen in liquid nitrogen immediately, and stored at −80 °C for further analysis. ZFX immunohistochemical staining was performed as described previously [9]. Briefly, 4.0-μm-thick paraffin-embedded tissue sections were prepared and incubated with NBP1-80582 ZFX antibody purchased from Novus Company. Staining was done with an EliVisionTM plus kit (Fuzhou Maixin Biotech. Co., Ltd). Then, in each slice, five fields were selected randomly under high magnification (400×). The mean optical density (OD) of ZFX positive cells was counted in each field, and then, OD value of five fields was averaged for ZFX expression in each slice. OD value of each specimen was calculated as above, and paired t test was used to for OD value comparation between tumor and normal adjacent tissue samples. Leica dc300f microscope, Leica IM50 picture collecting system, and Leica Qwin software were used here.
Table 1 Patient information
Production of lentivirus expressing ZFX-siRNA
To inhibit ZFX expression, lentivirus expressing siRNA targeting ZFX specifically was produced as described previously [10]. Briefly, siRNA (siRNA sequence: gaGCCTGAGAATGATCATGGA) specifically targeting human ZFX gene (ZFX-siRNA) was designed while scrambled siRNA (scr-siRNA) with the following sequence was used as the negative control: TTCTCCGAACGTGTCACGT. To construct lentivirus expressing ZFX- or scr-siRNA, complementary single-strand DNA oligonucleotides were synthesized, annealed, and then inserted into lentiviral vector pGCSIL-GFP (GeneChem, Shanghai, China). Lentivector expression system (GeneChem, Shanghai, China) was selected to prepare desired lentivirus. Human tongue squamous cell carcinoma cell line Tca-8113 was selected and infected with lentivirus expressing ZFX- or scr-siRNA to determine the knockdown efficiency at RNA and protein level by real-time PCR and Western blot.
Bromodeoxyuridine (BrdU) incorporation assay
Cell proliferation was assessed using BrdU incorporation assay. Human tongue squamous cell carcinoma cell line Tca-8113 was cultured and infected with lentivirus expressing ZFX or scrambled siRNA and incubated for another 48 h. Cells were then resuspended and seeded into 96-well plates at the proper density and cultured for another 1 or 4 days. Then, BrdU reagents were added with 1:100 dilution (10 μl/well). After 2–24 h, BrdU incorporation was analyzed using a BrdU Cell Proliferation ELISA kit (Cat. No. 11647229001, Roche Applied Science) following the manufacturer’s instructions. Briefly, cell fixation was performed using FixDenat (200 μl/well) for 30 min and blocked with 5–10 % BSA for another 30 min at room temperature. Then, cells were treated with diluted anti-BrdU-POD for 90 min at room temperature. Cells were incubated with substrate solution for 5–30 min in the dark after washing three times with washing buffer. After color development, the absorbance of the samples was measured at 450 nm to determine BrdU incorporation ratio.
MTT assay
Cell proliferation status was determined by MTT assay. Human tongue squamous cell carcinoma cell line Tca-8113 was infected with lentivirus expressing ZFX-siRNA or scrambled siRNA and incubated to reach logarithmic phase. Cells were then digested and resuspended thoroughly. Cell number was then counted using a hemocytometer, and 3000 cells per well were added in 96-well plates and cultured at 37 °C in a 5 % CO2 incubator. Cell proliferation was monitored for continuous 5 days with MTT assay. Each well was incubated with 20 μl of MTT solution (5 mg/ml) for 4 h. The culture medium was discarded, and 150 μl DMSO was added to dissolve formazan. 96-well plate was shaken for 5–10 min, and absorbance at 490/570 nm was examined with a microplate reader.
Cell apoptosis measurement
Cell apoptosis was detected using annexin V-APC apoptosis detection kit (eBioscience, 88–8007) and measured with flow cytometry. In brief, Tca-8113 cells were infected with lentivirus expressing ZFX-siRNA or scrambled siRNA and incubated at 37 °C for 4 days. After collection and washing with phosphate-buffered saline (PBS) buffer, cells were resuspended with staining buffer at a final density of 1 × 106–1 × 107/ml. Then, 5 μl annexin V-APC was added to 100 μl cell suspensions and incubated at room temperature in the dark for 10–15 min. Finally, cells were analyzed with FACS Calibur (Becton-Dickinson, USA) to determine cell apoptosis profiles.
RNA extraction, reverse-transcription, and real-time quantitative PCR
To determine the siRNA efficiency, Tca-8113 cells were infected with lentivirus expressing either ZFX-siRNA or scrambled siRNA and cultured for another 48 h. Then, total RNA was isolated using Trizol reagent (Invitrogen) according to the manufacturer’s instructions. M-MLV reverse transcriptase (Promega) and Oligo dT primers (Sangon, Shanghai) were used for reverse transcription to produce cDNAs. Briefly, a 10 μl mixture containing 2 μg RNA, 0.5 μg Oligo dT primers was incubated at 70 °C for 10 min and then cooled on ice. Then, buffer, reverse transcriptase, RNase inhibitor, and dNTPs were added to a final 20 μl mixture and incubated at 42 °C for 1 h. ZFX expression was quantified with real-time quantitative PCR using a Real-Time PCR machine TP800 (Takara). Here, glyceraldehyde-3-phosphate dehydrogenase (GAPDH) was used as an internal control. Primers used in real-time PCR were as follows: GAPDH for 5′-TGACTTCAACAGCGACACCCA-3′; GAPDH reverse: 5′-CACCCTGTTGCTGTAGCCAAA-3′; ZFX for 5′-GGCAGTCCACAGCAAGAAC-3′; ZFX reverse: 5′-TTGGTATCCGAGAAAGTCAGAAG-3′. Messenger RNA (mRNA) levels of ZFX were normalized against GAPDH, and the comparative CT method was chosen to quantify ZFX expression in Microsoft Excel.
Colony formation assay
In brief, lentivirus expressing either ZFX-siRNA or scrambled siRNA was added into Tca-8113 cells. After incubation for another 48 h, cells reached the logarithmic phase and were harvested. Then, cell density was calculated using a hemocytometer, and 800 cells per well were plated in triplicate into 6-well plates. After culturing in a 5 % CO2 incubator at 37 °C for another 14 days, cells were fixed with paraformaldehyde for 30–60 min and then stained with GIEMSA for 20 min. Micropublisher 3.3RTV (Olympus) was used for imaging capture, and then, cell colonies under each condition were counted and analyzed.
Cell cycle analysis by flow cytometry
Cell cycle process was analyzed using flow cytometry as described in previous studies with slight modifications [11]. In brief, lentivirus expressing either ZFX-specific siRNA or scrambled siRNA was added into human tongue squamous cell carcinoma cell line Tca-8113. After incubation for another 4 days, cells were resuspended and seeded in 6-cm dishes. Cells were collected and fixed with ice-cold 70 % alcohol after reaching approximately 80 % coverage. 40 × PI stock (2 mg/ml), 100 × RNase stock (10 mg/ml), and 1 × PBS buffer at a dilution of 25:10:1000 were used for subsequent cell staining. Then, flow cytometry machine FACS Calibur (Becton-Dickinson, USA) was used to perform cell cycle analysis. At least 1 × 106 cells per sample were used for cell cycle analysis, and experiments were replicated for three times independently.
Western blot
In brief, Tca-8113 cells were washed with TBST buffer and then treated with lysis buffer. Appropriate protein lysates were mixed with 2× loading buffer, separated on 10–12 % SDS-PAGE and transferred to PVDF membranes (Amersham), which was further blocked with 5 % dissolved milk buffer for 2 h at room temperature and incubated overnight with specific primary antibodies including anti-cleaved caspase 3 (Cell Signaling #9664), anti-cleaved PARP (Cell Signaling #5625), and anti-GAPDH. After washing three times with TBST buffer, corresponding secondary antibodies coupled to HRP from Santa Cruz were added and ECL-Plus kit (Amersham Biosciences) was used for signal detection.