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Complete genome sequence of Microvirga sp. 17mud 1–3, a radiation-resistant bacterium

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Abstract

Backgrounds

The genera Deinococcus Hymenobacter, Spirosoma, and Rubrobacter are renowned as an extremophilic bacteria. Most of the species of these genera have been shown to be either gamma radiation resistant or UV radiation resistant or both. Strain 17mud 1–3 was isolated from gamma-irradiated mud sample collected at Boryeong beach, South Korea.

Methods

The genome of strain 17mud 1–3 was sequenced and assembled using Pacific Biosciences RS II system. The genome sequence was annotated using Genomes-Expert Review (IMG-ER) platform, Prodigal, and JGI GenePRIMP pipeline. The protein-coding genes were identified using Prodigal, Pfam and COG databases implemented in the IMG systems.

Results

The complete genome consists of a circular chromosome (4,403,107 bp) encoding 4,368 coding sequences (CDs) and 4,301genes.

Conclusion

The new strains showed both gamma and UV-C irradiation resistance and their complete genome sequence annotation features showed the presence of the genes involved in the radiation-resistance.

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Author notes

  1. These authors contributed equally to this work.

Authors and Affiliations

  1. Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul, 01797, Republic of Korea

    Gayathri Sathiyaraj, Myung Kyum Kim, Ju-Young Kim, Su-Jeong Kim, Jun Hwee Jang, Soohyun Maeng & Sathiyaraj Srinivasan

  2. Microorganism Resources Division, National Institute of Biological Resources, Incheon, 22689, Republic of Korea

    Myung-Suk Kang

Authors
  1. Gayathri Sathiyaraj
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  2. Myung Kyum Kim
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  3. Ju-Young Kim
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  4. Su-Jeong Kim
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  5. Jun Hwee Jang
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  6. Soohyun Maeng
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  7. Myung-Suk Kang
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  8. Sathiyaraj Srinivasan
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Correspondence to Sathiyaraj Srinivasan.

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Sathiyaraj, G., Kim, M.K., Kim, JY. et al. Complete genome sequence of Microvirga sp. 17mud 1–3, a radiation-resistant bacterium. Mol. Cell. Toxicol. 14, 347–352 (2018). https://doi.org/10.1007/s13273-018-0038-9

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  • DOI: https://doi.org/10.1007/s13273-018-0038-9

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