Abstract
Ploidy and karyotype asymmetry of four cultivated Musa acuminata var. Luwaobi, var. Masung Tabi, var. Gopi and var. Poitrish Kola (2n = 3x = 33) and three wild seeded M. acuminata var. Ram Kola, Musa balbisiana var. Blung Thali and Musa laterita (2n = 2x = 22) were reported for the first time from North East India. The predominance of median constricted chromosomes was found as compared to sub-median constricted chromosome in all genotypes. The average chromosome length varied from 1.55 μm in var. Luwaobi to 1.92 μm in var. Ram Kola. Symmetric karyotype was recorded in the wild as compared to the cultivated Musa genotypes. Out of the twelve inter- and intra-chromosomal asymmetry indices studied, intra-chromosomal asymmetry index (A1) versus inter-chromosomal asymmetry index (A2), relative variation in the centromeric index (CVCI) versus relative variation in chromosome length (CVCL) and heterogeneity of chromosome length (AI) versus dispersion index were found most reliable to assess chromosome asymmetry. Most symmetric karyotype was found in var. Poitrish Kola of Tripura and most asymmetric karyotype was found in var. Luwaobi of Manipur among cultivated genotypes. Genotype var. Ram Kola showed more karyotype asymmetry among the wild Musa as compared to var. Blung Thali of Tripura and M. laterita of Sikkim. Phylogenetic tree obtained from chromosome characters revealed that var. Ram Kola has ancestral karyotype and was found to be distantly related from the others. Two wild seeded genotypes M. balbisiana var. Blung Thali and M. laterita were found to have close relationship with AB genome suggesting the phylogenetic ancestry with AA or AAA genotypes.





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Arano H. Cytological studies in subfamily Carduoideae (Compositae) of Japan. IX. The karyotype analysis and phylogenetic considerations on Pertya and Ainsliaea. Bot Mag. 1963;76:32–9.
Argent GCG. The wild bananas of Papua New Guinea. Notes R Bot Gard Edinb. 1976;35:77–114.
Assis FNM, Souza BCQ, Medeiros-Neto E, Pinheiro F, Silva AEB, Felix LP. Karyology of the genus Epidendrum (Orchidaceae: Laeliinae) with emphasis on subgenus Amphiglottium and chromosome number variability in Epidendrum secundum. Bot J Linn Soc. 2013;172:329–44.
Atom AD, Lalrinfela P, Thangjam R. Genome classification of banana genetic resources of Manipur using morphological characters. Sci Vis. 2015;15:189–95.
Azhar M, Heslop-Harrison JS. Genomes, diversity and resistance gene analogues in Musa species. Cytogen Genome Res. 2008;121:59–66.
Bartoš J, Alkhimova O, Doleželová M, De Langhe E, Doležel J. Nuclear genome size and genomic distribution of ribosomal DNA in Musa and Ensete (Musaceae): taxonomic implications. Cytogenet Genome Res. 2005;109:50–7.
Cheesman EE. Classification of the bananas. The genus Ensete Horan and the genus Musa L. Kew Bull. 1947;2:97–117.
Christelová P, De Langhe E, Hřibová E, Čížková J, Sardos J, Hušáková M, Van den Houwe I, Sutanto A, Kepler AK, Swennen R, Roux N, Doležel J. Molecular and cytological characterization of the global Musa germplasm collection provides insights into the treasure of banana diversity. Biodivers Conserv. 2017;26:801–24.
Čížková J, Hřibová E, Humplíková L, Christelová P, Suchánková P, Doležel J. Molecular analysis and genomic organization of major DNA satellites in Banana (Musa spp.). PLoS ONE. 2013;8:e54808.
D’Hont A. Unraveling the genome structure of polyploids using FISH and GISH; examples of sugarcane and banana. Cytogenet Genome Res. 2005;109:27–33.
D’Hont A, Paget-Goy A, Escoute J, Carreel F. The interspecific genome structure of cultivated banana, Musa spp. revealed by genomic DNA in situ hybridization. Theor Appl Genet. 2000;100:177–83.
Daniells JW, Jenny C, Karamura DA, Tomekpe K, Arnaud E, Sharrock S. Musalogue: a catalogue of Musa germplasm. Diversity in the genus Musa. INIBAP, Montpellier (FRA). 2001; 213.
Das AB, Das P. Estimation of 4C DNA content and karyotype analysis in edible varieties of banana (Musa acuminata). Cytobios. 1994;78:213–20.
Das AB, Das P. Estimation of nuclear DNA content and karyotype analysis in nine cultivars of Musa acuminata. Cytobios. 1997;90:181–92.
Das AB, Mallick R. Varietal difference in 4C DNA content and chromosome characteristic of Coriandrum sativum L. Cytologia. 1989;54:609–16.
Das AB, Mallick R. Karyotype diversity and interspecific 4C DNA variation in Bupleurum. Biol Plant. 1993;35:355–63.
Das AB, Das A, Pradhan C, Naskar SK. Genotypic variations of ten Indian varietiess of Colocasia esculenta var antiquorom Schott. evident by chromosomal and RAPD markers. Caryologia. 2015;68:44–54.
Doležel J, Valárik M, Vrána J, Lysák MA, Hřibová E, Batroš J, Gasmanová N, Doleželova M, Šafář J, Šimková H. Molecular cytogenetics and cytometry of bananas (Musa Spp.). In: Jain SM, Swennen R, editors. Banana improvement: cellular, molecular biology, and induced mutations. Enfield: Science Publishers, Inc.; 2004. p. 229–44.
Garcia-Vallve S, Palau J, Romeu A. Horigental gene transfer in glycosyl hydrolases inferred from codon usage in Escherichia coli and Bacillus subtilis. Mol Biol Evol. 1999;16:1125–34.
Ghosh S, Das A, Ghorai A, Jha TB. Comparative kayomorphology of edible Musa varietiess of West Bengal. Caryologia. 2013;66:243–50.
Greilhuber J, Speta F. C-banded karyotypes in the Scilla hohenackeri group, S. persica, and Puschkinia (Liliaceae). Plant Syst Evol. 1976;126:149–88.
Guerra M. Reviewing chromosome nomenclature of Levan et al. Rev Bras Gen. 1986;4:741–3.
Häkkinen M. Reappraisal of sectional taxonomy in Musa (Musaceae). Taxon. 2013;62:809–13.
Hřibová E, Čížková J, Christelová P, Taudien S, De Langhe E, Doležel J. The ITS1-5.8S-ITS2 sequence region in the Musaceae: structure, diversity and use in molecular phylogeny. PLoS ONE. 2011;6:e17863.
Huziwara Y. Karyotype analysis in some genera of Compositae VIII. Further studies on the chromosomes of Aster. Am J Bot. 1962;49:116–9.
Jeridi M, Bakry F, Escoute J, Fondi E, Carreel F, Ferchichi A, D’Hont A, Rodier-Goud M. Homoeologous chromosome pairing between the A and B genomes of Musa spp. revealed by genomic in situ hybridization. Ann Bot. 2011;108:975–81.
La Siljak-Yakovlev S. dysploïdie et l’évolution du caryotype. Bocconea. 1996;5:211–20.
Lalrinfela PC, Thangjam R. Genome characterization of banana genetic resources of Mizoram, India. Sci Vis. 2012;12:32–6.
Lavania UC, Srivastava S. A simple parameter of dispersion index that serves as a adjunct to karyotype asymmetry. J Biosci. 1992;17:179–82.
Leitch IJ, Beaulieu JM, Cheung K, Hanson L, Lysak M, Fay MF. Punctuated genome size evolution in Liliaceae. J Evol Biol. 2007;20:2296–308.
Levan A, Fredya K, Sandberg A. Nomenclatyure for centromeric position on chromosome. Heridity. 1964;52:201–20.
Levitsky GA. The karyotype in systematics. Bull Appl Bot Genet Plant Breed. 1931;27:220–40.
Li LF, Häkkinen M, Yuan YM, Hao G, Ge XJ. Molecular phylogeny and systematics of the banana family (Musaceae) inferred from multiple nuclear and chloroplast DNA fragments, with a special reference to the genus Musa. Mol Phylogenet Evol. 2010;57:1–10.
Li Y, Zhang Z, Wu W, Miao S, Chang J. Chromosome and karyotype analysis of Hibiscus mutabilis f. mutabilis. Front Life Sci. 2015;8:300–4.
Martin E, Yıldız HK, Kahraman A, Binzat OK, Eroğlu HE. Detailed chromosome measurements and karyotype asymmetry of some Vicia (Fabaceae) taxa from Turkey. Caryologia. 2018. https://doi.org/10.1080/00087114.2018.1460058.
Medeiros-Neto E, Nollet F, Moraes AP, Felix LP. Intrachromosomal karyotype asymmetry in Orchidaceae. Genet Mol Biol. 2017;40:610–9.
Paszko B. A critical review and a proposal of karotype asymmetry indices. Plant Syst Evol. 2006;258:39–48.
Perrier X, Langhe ED, Donohue M, Lentfer C, Vrydaghs L, Bakry F, Carreel F, Hippolyte I, Horry J-P, Jenny C, Lebot V, Risterucci A-M, Tomekpe K, Doutrelepont H, Ball T, Manwaring J, Maret Pd, Denham T. Multidisciplinary perspectives on banana (Musa spp.) domestication. PNAS. 2011;108:11311–8.
Peruzzi L, Eroǧlu HE. Karyotype asymmetry: again, how to measure and what to measure? Comp Cytogenet. 2013;7:1–9.
Peruzzi L, Leitch IJ, Caparelli KF. Chromosome diversity and evolution in Liliaceae. Ann Bot (Lond). 2009;103:459–75.
Pierozzi NI. Karyotype and nor-banding of mitotic chromosomes of some Vitis L. species. Rev Bras Frutic. 2011; 33(special issue):564–70.
Rai S, Das AB, Das P. Estimation of 4C DNA and karyotype analysis in ginger (Zingiber officinale Rscc)—I. Cytologia. 1997;62:133–41.
Risterucci AM, Hippolyte I, Perrier X, Xia L, Caig V, Evers M, Huttner E, Kilian A, Glaszmann JC. Development and assessment of diversity arrays technology for high-throughput DNA analyses in Musa. Theor Appl Genet. 2009;119:1093–103.
Romero-Zarco CR. A new method for estimating karyotype asymmetry. Taxon. 1986;35:526–30.
Shi L, Li H, Gao R, et al. Chromosome number and karyotype analysis of Althaea rosea. Jiangsu Agric Sci. 2009;5:173–4.
Siljak-Yakovlev S, Peruzzi L. Cytogenetic characterization of endemics: past and future. Plant Biosyst. 2012;146:694–702.
Simmonds NW, Shepherd K. The taxonomy and origin of the cultivated banana. J Linn Soc Bot. 1955;55:302–12.
Sokal PR, Rohlf FJ. Introduction to biostatistic. San Franscisco: Freeman; 1973.
Souza LGR, Crosa O, Guerra M. Karyological circumscription of Ipheion Rafinesque (Gilliesioideae, Alliaceae). Plant Syst Evol. 2010;287:119–27.
Stebbins GL. Chromosomal evolution in higher plants. London: Edward Arnold (Publishers) Ltd.; 1971. p. 216.
Takahashi H. Karyotype variations of Tricyrtis hirta Hook. (Liliaceae). Acta Phytotax Geobot. 1991;42:113–24.
Uma S, Saravanaperumal SA, Saraswathi MS, Durai P, Sharma TVRS, Singh BD, Selvarajan R, Sathiamoorthy S. Studies on the origin and diversification of Indian wild banana (Musa balbisiana) using arbitrarily amplified DNA markers. J Hortic Sci Biotechnol. 2005;80:575–80.
Uma S, Siva SA, Saraswathi MS, Manickavasagam M, Durai P, Selvarajan R, Sathiamoorthy S. Variation and intraspecific relationships in Indian wild Musa balbisiana (BB) population as evidenced by random amplified polymorphic DNA. Genet Res Crop Evol. 2006;53:349–55.
Watanabe K, Yahara T, Denda T, Kosegu K. Chromosomal evolution in the genus Brachyscome (Asteraceae, Astereae): statistical tests regarding correlation between changes in karyotype and habit using phylogenetic information. J Plant Res. 1999;112:145–61.
Zuo L, Yuan Q. The difference between the heterogeneity of the centromeric index and intrachromosomal asymmetry. Plant Syst Evol. 2011;297:141–5.
Acknowledgements
The authors are thankful to the Head of the Botany, Utkal University for providing administrative and microscopic facilities developed under DSR-III, University Grant Commission, and FIST programme, Govt. of India to carry out the research. Thanks to Prof. (Mrs.) K. Sarangthem, Department of Botany, Manipur University for her help during the collection of banana germplasms from Manipur. The financial support received from the Department of Biotechnology, Government of India [Project No DBT-NER/AGRI/33/2016 (Group-I, Application No. 02 & 90)] is duly acknowledged.
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Dehery, S.K., Panda, E., Saha, P.R. et al. Chromosome diversity and karyotype asymmetry analysis in four cultivated triploid and three diploid wild genotypes of Musa from North-East India. Nucleus 64, 167–179 (2021). https://doi.org/10.1007/s13237-020-00334-z
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DOI: https://doi.org/10.1007/s13237-020-00334-z


