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Fungal diversity notes 709–839: taxonomic and phylogenetic contributions to fungal taxa with an emphasis on fungi on Rosaceae

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Abstract

This paper is the seventh in the Fungal Diversity Notes series, where 131 taxa accommodated in 28 families are mainly described from Rosa (Rosaceae) and a few other hosts. Novel fungal taxa are described in the present study, including 17 new genera, 93 new species, four combinations, a sexual record for a species and new host records for 16 species. Bhatiellae, Cycasicola, Dactylidina, Embarria, Hawksworthiana, Italica, Melanocucurbitaria, Melanodiplodia, Monoseptella, Uzbekistanica, Neoconiothyrium, Neopaucispora, Pararoussoella, Paraxylaria, Marjia, Sporormurispora and Xenomassariosphaeria are introduced as new ascomycete genera. We also introduce the new species Absidia jindoensis, Alternaria doliconidium, A. hampshirensis, Angustimassarina rosarum, Astragalicola vasilyevae, Backusella locustae, Bartalinia rosicola, Bhatiellae rosae, Broomella rosae, Castanediella camelliae, Coelodictyosporium rosarum, Comoclathris rosae, C. rosarum, Comoclathris rosigena, Coniochaeta baysunika, C. rosae, Cycasicola goaensis, Dactylidina shoemakeri, Dematiopleospora donetzica, D. rosicola, D. salsolae, Diaporthe rosae, D. rosicola, Endoconidioma rosae-hissaricae, Epicoccum rosae, Hawksworthiana clematidicola, H. lonicerae, Italica achilleae, Keissleriella phragmiticola, K. rosacearum, K. rosae, K. rosarum, Lophiostoma rosae, Marjia tianschanica, M. uzbekistanica, Melanocucurbitaria uzbekistanica, Melanodiplodia tianschanica, Monoseptella rosae, Mucor fluvius, Muriformistrickeria rosae, Murilentithecium rosae, Neoascochyta rosicola, Neoconiothyrium rosae, Neopaucispora rosaecae, Neosetophoma rosarum, N. rosae, N. rosigena, Neostagonospora artemisiae, Ophiobolus artemisiicola, Paraconiothyrium rosae, Paraphaeosphaeria rosae, P. rosicola, Pararoussoella rosarum, Parathyridaria rosae, Paraxylaria rosacearum, Penicillium acidum, P. aquaticum, Phragmocamarosporium rosae, Pleospora rosae, P. rosae-caninae, Poaceicola agrostina, P. arundinicola, P. rosae, Populocrescentia ammophilae, P. rosae, Pseudocamarosporium pteleae, P. ulmi-minoris, Pseudocercospora rosae, Pseudopithomyces rosae, Pseudostrickeria rosae, Sclerostagonospora lathyri, S. rosae, S. rosicola, Seimatosporium rosigenum, S. rosicola, Seiridium rosarum, Setoseptoria arundelensis, S. englandensis, S. lulworthcovensis, Sigarispora agrostidis, S. caryophyllacearum, S. junci, S. medicaginicola, S. rosicola, S. scrophulariae, S. thymi, Sporormurispora atraphaxidis, S. pruni, Suttonomyces rosae, Umbelopsis sinsidoensis, Uzbekistanica rosae-hissaricae, U. yakutkhanika, Wojnowicia rosicola, Xenomassariosphaeria rosae. New host records are provided for Amandinea punctata, Angustimassarina quercicola, Diaporthe rhusicola, D. eres, D. foeniculina, D. rudis, Diplodia seriata, Dothiorella iberica, Lasiodiplodia theobromae, Lecidella elaeochroma, Muriformistrickeria rubi, Neofusicoccum australe, Paraphaeosphaeria michotii, Pleurophoma pleurospora, Sigarispora caulium and Teichospora rubriostiolata. The new combinations are Dactylidina dactylidis (=Allophaeosphaeria dactylidis), Embarria clematidis (=Allophaeosphaeria clematidis), Hawksworthiana alliariae (=Dematiopleospora alliariae) and Italica luzulae (=Dematiopleospora luzulae). This study also provides some insights into the diversity of fungi on Rosa species and especially those on Rosa spines that resulted in the characterisation of eight new genera, 45 new species, and nine new host records. We also collected taxa from Rosa stems and there was 31% (20/65) overlap with taxa found on stems with that on spines. Because of the limited and non-targeted sampling for comparison with collections from spines and stems of the same host and location, it is not possible to say that the fungi on spines of Rosa differ from those on stems. The study however, does illustrate how spines are interesting substrates with high fungal biodiversity. This may be because of their hard structure resulting in slow decay and hence are suitable substrates leading to fungal colonisation. All data presented herein are based on morphological examination of specimens, coupled with phylogenetic sequence data to better integrate taxa into appropriate taxonomic ranks and infer their evolutionary relationships.

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References

  • Abdullah SK, Asensio L, Monfort E, Gomez-Vidal S, Palma-Guerrero J, Salinas J, Lopez-Llorca LV, Jansson HB, Guarro J (2005) Occurrence in Elx, SE Spain of inflorescence rot disease of date palms caused by Mauginiella scaettae. J Phytopathol 153:417–422

    Article  Google Scholar 

  • Abraham EP, Chain E, Fletcher CM, Gardner AD, Heatley NG, Jennings MA, Florey HW (1941) Further observations on Penicillin. The Lancet 238:177–188

    Article  Google Scholar 

  • Adsul MG, Bastawde KB, Varma AJ, Gokhale DV (2007) Strain improvement of Penicillium janthinellum NCIM 1171 for increased cellulase production. Bioresour Technol 98:1467–1473

    Article  CAS  PubMed  Google Scholar 

  • Afshan NS, Khalid AN (2014) New records of Phragmidium species from Pakistan. Mycotaxon 128:61–70

    Article  Google Scholar 

  • Ahmed SA, Stevens DA, van de Sande WW, Meis JF, de Hoog GS (2014) Roussoella percutanea, a novel opportunistic pathogen causing subcutaneous mycoses. Med Mycol 52:689–698

    Article  PubMed  Google Scholar 

  • Ali B, Sohail Y, Mumtaz AS, Berndt R (2017) Phragmidium punjabense, a new species of rust fungus on Rosa brunonii in the outer Himalayan ranges of Murree, Pakistan. Nova Hedwigia 105:385–396

    Article  Google Scholar 

  • Almeida DAC, Gusmão LFP, Miller AN (2017) A new species of Bertiella (Melanommataceae) from Brazil and a key to accepted species. Mycosphere 8:392–396

    Article  Google Scholar 

  • Amos RE, Barnett HL (1966) Umbelopsis versiformis, a new genus and species of the imperfects. Mycologia 58:805–808

    Article  Google Scholar 

  • Arenal F, Platas G, Pelaez F (2007) A new endophytic species of Preussia (Sporormiaceae) inferred from morphological observations and molecular phylogenetic analysis. Fungal Divers 25:1–17

    Google Scholar 

  • Ariyawansa HA, Tanaka K, Thambugala KM, Phookamsak R, Tian Q, Camporesi E, Hongsanan S, Monkai J, Wanasinghe DN, Mapook A, Chukeatirote E (2014) A molecular phylogenetic reappraisal of the Didymosphaeriaceae (=Montagnulaceae). Fungal Divers 68:69–104

    Article  Google Scholar 

  • Ariyawansa HA, Hyde KD, Jayasiri SC, Buyck B, Chethana KWT, Dai DQ, Dai YC, Daranagama DA, Jayawardena RS, Lücking R, Ghobad-Nejhad M, Niskanen T, Thambugala KM, Voigt K, Zhao RL, Li GJ, Doilom M, Boonmee S, Yang ZL, Cai Q, Cui YY, Bahkali AH, Chen J, Cui BK, Chen JJ, Dayarathne MC, Dissanayake AJ, Ekanayaka AH, Hashimoto A, Hongsanan S, Jones EBG, Larsson E, Li WJ, Li QR, Liu JK, Luo ZL, Maharachchikumbura SSN, Mapook A, McKenzie EHC, Norphanphoun C, Konta S, Pang KL, Perera RH, Phookamsak R, Phukhamsakda C, Pinruan U, Randrianjohany E, Singtripop C, Tanaka K, Tian CM, Tibpromma S, Abdel-Wahab MA, Wanasinghe DN, Wijayawardene NN, Zhang JF, Zhang H, Abdel- Aziz FA, Wedin M, Westberg M, Ammirati JF, Bulgakov TS, Lima DX, Callaghan TM, Callac P, Chang CH, Coca LF, Dal-Forno M, Dollhofer V, Fliegerová K, Greiner K, Griffith GW, Ho HM, Hofstetter V, Jeewon R, Kang JC, Wen TC, Kirk PM, Kytövuori I, Lawrey JD, Xing J, Li H, Liu ZY, Liu XZ, Liimatainen K, Thorsten Lumbsch H, Matsumura M, Moncada B, Nuankaew S, Parnmen S, Santiago ALCMA, Sommai S, Song Y, de Souza CAF, de Souza- Motta CM, Su HY, Suetrong S, Wang Y, FongWS YH, Zhou LW, Réblová M, Fournier J, Camporesi E, Luangsa-ard JJ, Tasanathai K, Khonsanit A, Thanakitpipattana D, Somrithipol S, Diederich P, Millanes AM, Common RS, Stadler M, Yan JY, Li XH, Lee HW, Nguyen TTT, Lee HB, Battistin E, Marsico O, Vizzini A, Vila J, Ercole E, Eberhardt U, Simonini G, Wen HA, Chen XH, Miettinen O, Spirin V, Hernawati (2015) Fungal diversity notes 111–252 taxonomic and phylogenetic contributions to fungal taxa. Fungal Divers 75:27–274

    Article  Google Scholar 

  • Asgari B, Zare R (2011) A contribution to the taxonomy of the genus Coniocessia (Xylariales). Mycol progress 10:189–206

    Article  Google Scholar 

  • Barr ME (1987) Prodomus to class Loculoascomycetes. Newell, Amherst

    Google Scholar 

  • Barr ME (1990) Melanommatales (Loculoascomycetes). N Am Flora Ser II 13:1–129

    Google Scholar 

  • Barr ME (2002) Teichosporaceae, another family in the Pleosporales. Mycotaxon 82:373–389

    Google Scholar 

  • Benny GL (2008) Methods used by Dr. R. K. Benjamin, and other mycologists, to isolate Zygomycetes. Aliso 26:37–61

    Article  Google Scholar 

  • Benny GL, Benjamin RK (1975) Observations on Thamnidiaceae (Mucorales). New taxa, new combinations, and notes on selected species. Aliso 8:301–351

    Article  Google Scholar 

  • Benny GL, Humber RA, Voigt K (2014) Zygomycetous fungi: Phylum Entomophthoromycota and subphyla Kickxellomycotina, Mortierellomycotina, Mucoromycotina, and Zoopagomycotina. In: McLaughlin DJ, Spatafora JW (eds) Mycota VII, part A, systematics and evolution. Springer, New York, pp 209–250

    Google Scholar 

  • Braun U, Nakashima C, Crous PW (2013) Cercosporoid fungi (Mycosphaerellaceae) 1. Species on other fungi, Pteridophyta and Gymnospermae. IMA Fungus 4:265–345

    Article  PubMed  PubMed Central  Google Scholar 

  • Braun U, Crous PW, Nakashima C (2014) Cercosporoid fungi (Mycosphaerellaceae) 2. Species on monocots (Acoraceae to Xyridaceae, excluding Poaceae). IMA Fungus 5:203–390

    Article  PubMed  PubMed Central  Google Scholar 

  • Braun U, Crous PW, Nakashima C (2015a) Cercosporoid fungi (Mycosphaerellaceae) 3. Species on monocots (Poaceae, true grasses). IMA Fungus 6:25–97

    Article  PubMed  PubMed Central  Google Scholar 

  • Braun U, Crous PW, Nakashima C (2015b) Cercosporoid fungi (Mycosphaerellaceae) 4. Species on dicots (Acanthaceae to Amaranthaceae). IMA Fungus 6:373–469

    Article  PubMed  PubMed Central  Google Scholar 

  • Braun U, Crous PW, Nakashima C (2016) Cercosporoid fungi (Mycosphaerellaceae) 5 Species on dicots (Anacardiaceae to Annonaceae). IMA Fungus 7:161–216

    Article  PubMed  PubMed Central  Google Scholar 

  • Brockmann I (1976) Untersuchungen über die Gattung Discostroma Clements (Ascomycetes). Sydowia 28:275–338

    Google Scholar 

  • Bruneau A, Starr JR, Joly S (2007) Phylogenetic relationships in the genus Rosa: new evidence from chloroplast DNA sequences and an appraisal of current knowledge. Syst Bot 32:366–378

    Article  Google Scholar 

  • Bzdyk RM, Kohler J, Olchowik J, Aleksandrowicz-Trzcińska M, Kirisits T (2016) Arum-type of arbuscular mycorrhizae, dark septate endophytes and Olpidium spp. In fine roots of container-grown seedlings of Sorbus torminalis (Rosaceae). Acta Soc Bot Pol Pol 85:1–12

    Google Scholar 

  • Cannon PF (1996) Systematics and diversity of the Phyllachoraceae associated with Rosaceae, with a monograph of Polystigma. Mycol Res 100:1409–1427

    Article  Google Scholar 

  • Castlebury LA, Rossman AY, Jaklitsch WJ, Vasilyeva LN (2002) A preliminary overview of the Diaporthales based on large subunit nuclear ribosomal DNA sequences. Mycologia 94:1017–1031

    Article  CAS  PubMed  Google Scholar 

  • Cesati V, De Notaris G (1863) Schema di classificazione degle sferiacei italici aschigeri piu’ o meno appartenenti al genere Sphaeria nell’antico significato attribuitoglide Persono. Commentario della Società Crittogamologica Italiana 1:177–420

    Google Scholar 

  • Chain E, Florey HW, Gardner AD, Heatley NG, Jennings MA, Orr-Ewing J, Sanders AG (1940) Penicillin as a chemotherapeutic agent. The Lancet 236:226–228

    Article  Google Scholar 

  • Chen KH, Miadlikowska J, Molnár K, Arnold AE, U’Ren JM, Gaya E, Gueidan C, Lutzoni F (2015a) Phylogenetic analyses of eurotiomycetous endophytes reveal their close affinities to Chaetothyriales, Eurotiales, and a new order- Phaeomonielles. Mol Phyl Evol 85:117–130

    Article  CAS  Google Scholar 

  • Chen Q, Jiang JR, Zhang GZ, Cai L, Crous PW (2015b) Resolving the Phoma enigma. Stud Mycol 82:137–217

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Chevallier FF (1826) Flore Ge´ne´rale des Environs de Paris [General Flora of the Area Around Paris], Ferra Jeune, France, pp 1–674

  • Choisy M (1950) Catalogue des lichens de la région Lyonnaise. Fasc. 3. Bull mens Soc linn Lyon 19:9–24

    Article  Google Scholar 

  • Chomnunti P, Schoch CL, Aguirre-Hudson B, KoKo TW, Hongsanan S, Jones EBG, Kodsub R, Chukeatirote E, Bahkali AH, Hyde KD (2011) Capnodiaceae. Fungal Divers 51:103–134

    Article  PubMed  PubMed Central  Google Scholar 

  • Chomnunti P, Hongsanan S, Hudson BA, Tian Q, Persˇoh D, Dhami MK, Alias AS, Xu J, Liu X, Stadler M, Hyde KD (2014) The sooty moulds. Fungal Divers 66:1–36

    Article  Google Scholar 

  • Clements FE (1909) The genera of Fungi, pp 1–227

  • Corda ACJ (1833) Deutschlands Flora, Abt. III. Die Pilze Deutschlands 3:65–96

    Google Scholar 

  • Crespo A, Kauff F, Divakar PK, del Prado R, Pérez-Ortega S, de Paz GA, Ferencova Z, Blanco O, Roca-Valiente B, Núñez-Zapata J, Cubas P, Argüello A, Elix JA, Esslinger TL, Hawksworth DL, Millanes A, Molina MC, Wedin M, Ahti T, Aptroot A, Barreno E, Bungartz F, Calvelo S, Candan M, Cole M, Ertz D, Goffinet B, Lindblom L, Lücking R, Lutzoni F, Mattsson JE, Messuti MI, Miadlikowska J, Piercey-Normore M, Rico VJ, Sipman HJM, Schmitt I, Spribille T, Thell A, Thor G, Upreti DK, Lumbsch HT (2010) Phylogenetic generic classification of parmelioid lichens (Parmeliaceae, Ascomycota) based on molecular, morphological and chemical evidence. Taxon 59:1735–1753

    Google Scholar 

  • Crous PW, Palm ME (1999) Systematics of selected foliicolous fungi associated with leaf spots of Proteaceae. Mycol Res 103:1299–1304

    Article  Google Scholar 

  • Crous PW, Schoch CL, Hyde KD, Wood AR, Gueidan C, de Hoog GS, Groenewald JZ (2009) Phylogenetic lineages in the Capnodiales. Stud Mycol 64:17–47

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Crous PW, Summerell BA, Shivas RG, Romberg M, Mel’nik VA, Verkley GJM, Groenewald JZ (2011) Fungal planet description sheets:92–106. Persoonia 27:130–162

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Crous PW, Braun U, Hunter GC, Wingfield MJ, Verkley GJM, Shin HD, Nakashima C, Groenewald JZ (2013) Phylogenetic lineages in Pseudocercospora. Stud Mycol 75:37–114

    Article  CAS  PubMed  Google Scholar 

  • Crous PW, Giraldo A, Hawksworth DL, Robert V, Kirk PM, Guarro J, Robbertse B, Schoch CL, Damm U, Trakunyingcharoen T, Groenewald JZ (2014a) The Genera of Fungi: fixing the application of type species of generic names. IMA Fungus 5:141–160

    Article  PubMed  PubMed Central  Google Scholar 

  • Crous PW, Giraldo A, Hawksworth DL, Robert V, Kirk PM, Guarro J, Robbertse B, Schoch CL, Damm U, Trakunyingcharoen T, Groenewald JZ (2014b) The Genera of Fungi: fixing the application of type species of generic names. IMA Fungus 5:141–160

    Article  PubMed  PubMed Central  Google Scholar 

  • Crous PW, Wingfield MJ, Burgess TI, Hardy GSJ, Crane C, Barrett S, Cano-Lira JF, Le Roux JJ, Thangavel R, Guarro J, Stchigel AM, Martín MP, Alfredo DS, Barber PA, Barreto RW, Baseia IG, Cano-Canals J, Cheewangkoon R, Ferreira RJ, Gené J, Lechat C, Moreno G, Roets F, Shivas RG, Sousa JO, Tan YP, Wiederhold NP, Abell SE, Accioly T, Albizu JL, Alves JL, Antoniolli ZI, Aplin N, Araújo J, Arzanlou M, Bezerra JDP, Bouchara J-P, Carlavilla JR, Castillo A, Castroagudín VL, Ceresini PC, Claridge GF, Coelho G, Coimbra VRM, Costa LA, da Cunha KC, da Silva SS, Daniel R, de Beer ZW, Dueñas M, Edwards J, Enwistle P, Fiuza PO, Fournier J, García D, Gibertoni TB, Giraud S, Guevara-Suárez M, Gusmão LFP, Haituk S, Heykoop M, Hirooka Y, Hofmann TA, Houbraken J, Hughes DP, Kautmanová I, Koppel O, Koukol O, Larsson E, Latha KPD, Lee DH, Lisboa DO, Lisboa WS, López-Villalba Á, Maciel JLN, Manimohan P, Manjón JL, Marincowitz S, Marney TS, Meijer M, Miller AN, Olariaga I, Paiva LM, Piepenbring M, Poveda-Molero JC, Raj KNA, Raja HA, Rougeron A, Salcedo I, Samadi R, Santos TAB, Scarlett K, Seifert KA, Shuttleworth LA, Silva GA, Silva M, Siqueira JPZ, Souza-Motta CM, Stephenson SL, Sutton DA, Tamakeaw N, Telleria MT, Valenzuela-Lopez N, Viljoen A, Visagie CM, Vizzini A, Wartchow F, Wingfield BD, Yurchenko E, Zamora JC, Groenewald JZ (2016a) Fungal Planet description sheets: 469–557. Persoonia 37:218–403

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Crous PW, Wingfield MJ, Richardson DM, Le Roux JJ, Strasberg D, Edwards J, Roets F, Hubka V, Taylor PWJ, Heykoop M, Martín MP, Moreno G, Sutton DA, Wiederhold NP, Barnes CW, Carlavilla JR, Gené J, Giraldo A, Guarnaccia V, Guarro J, Hernandez-Restrepo M, Kolařík M, Manjón JL, Pascoe IG, Popov ES, Sandoval-Denis M, Woudenberg JHC, Acharya K, Alexandrova AV, Alvarado P, Barbosa RN, Baseia IG, Blanchette RA, Boekhout T, Burgess TI, Cano-Lira JF, Čmoková A, Dimitrov RA, Dyakov MYu, Dueñas M, Dutta AK, Esteve-Raventós F, Fedosova AG, Fournier J, Gamboa P, Gouliamova DE, Grebenc T, Groenewald M, Hanse B, Hardy GSJ, Held BW, Jurjević Ž, Kaewgrajang T, Latha KPD, Lombard L, Luangsa-ard JJ, Lysková P, Mallátová N, Manimohan P, Miller AN, Mirabolfathy M, Morozova OV, Obodai M, Oliveira NT, Ordóñez ME, Otto EC, Paloi S, Peterson SW, Phosri C, Roux J, Salazar WA, Sánchez A, Sarria GA, Shin H-D, Silva BDB, Silva GA, Smith MTh, Souza-Motta CM, Stchigel AM, Stoilova-Disheva MM, Sulzbacher MA, Telleria MT, Toapanta C, Traba JM, Valenzuela-Lopez N, Watling R, Groenewald JZ (2016b) Fungal Planet description sheets: 400–468. Persoonia 36:316–458

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Cruywagen EM, Slippers B, Roux J, Wingfield MJ (2016) Phylogenetic species recognition and hybridization in Lasiodiplodia: a case study on species from baobabs. Fungal Biol 121:420–436

    Article  PubMed  Google Scholar 

  • Dai DQ, Phookamsak R, Wijayawardene NN, Li WJ, Bhat DJ, Xu JC, Taylor JE, Hyde KD, Chukeatirote E (2017) Bambusicolous fungi. Fungal Divers 82:1–105

    Article  Google Scholar 

  • Daranagama DA, Hyde KD, Sir EB, Thambugala KM, Tian Q, Samarakoon MC, McKenzie EH, Jayasiri SC, Tibpromma S, Bhat JD, Liu X (2018) Towards a natural classification and backbone tree for Graphostromataceae, Hypoxylaceae, Lopadostomataceae and Xylariaceae. Fungal Divers 1–165

  • De Gruyter J, Aveskamp MM, Woudenberg JHC, Verkley GJM, Groenewald JZ, Crous PW (2009) Molecular phylogeny of Phoma and allied anamorph genera: towards a reclassification of the Phoma complex. Mycol Res 113:508–519

    Article  PubMed  CAS  Google Scholar 

  • De Gruyter J, Woudenberg JHC, Aveskamp MM, Verkley GJM, Groenewald JZ, Crous PW (2010) Systematic reappraisal of species in Phoma section Paraphoma, Pyrenochaeta and Pleurophoma. Mycologia 102:1066–1081

    Article  PubMed  Google Scholar 

  • De Souza JI, Marano AV, Pires-Zotarelli CLA, Chambergo FS, Harakava R (2014) A new species of Backusella (Mucorales) from a Cerrado reserve in Southeast Brazil. Mycol Prog 13:975–980

    Article  Google Scholar 

  • Debener T, Byrne DH (2014) Disease resistance breeding in rose: current status and potential of biotechnological tools. Plant Sci 228:107–117

    Article  CAS  PubMed  Google Scholar 

  • Deng CH, Plummer KM, Jones DAB, Mesarich CH, Shiller Jason S, Taranto AP, Robinson AJ, Patrick K, Hall NE, Templeton MD, Bowen JK (2017) Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range. BMC Genomics 18:339

    Article  PubMed  PubMed Central  Google Scholar 

  • Dissanayake AJ, Phillips AJL, Hyde KD, Li XH (2016) Botryosphaeriaceae: current status of genera and species. Mycosphere 7:1001–1073

    Article  Google Scholar 

  • Dissanayake AJ, Camporesi E, Hyde KD, Yan JY, Li XH (2017a) Saprobic Botryosphaeriaceae, including Dothiorella italica sp. nov., associated with urban and forest trees in Italy. Mycosphere 8:1157–1176

    Article  Google Scholar 

  • Dissanayake AJ, Camporesi E, Hyde KD, Zhang W (2017b) Molecular phylogenetic analysis reveals seven new Diaporthe species from Italy. Mycosphere 8:853–877

    Article  Google Scholar 

  • Dissanayake AJ, Phillips AJL, Hyde KD, Yan JY, Li XH (2017c) The current status of species in Diaporthe. Mycosphere 8:1106–1156

    Article  Google Scholar 

  • Doilom M, Dissanayake AJ, Wanasinghe DN, Boonmee S, Liu JK, Bhat DJ, Taylor JE, Bahkali AH, McKenzie EHC, Hyde KD (2017) Microfungi on Tectona grandis (teak) in Northern Thailand. Fungal Divers 82:107–182

    Article  Google Scholar 

  • Dumortier BC (1822) Commentationes botanicae, pp 1–116

  • Ekanayaka AH, Ariyawansa HA, Hyde KD, Jones EBG, Daranagama DA, Phillips AJL, Hongsanan S, Jayasiri SC, Zhao Q (2017) Discomycetes: the apothecial representatives of the phylum Ascomycota. Fungal Divers 87:237–298

    Article  Google Scholar 

  • El-Bashiti TA, El-Kichaoui A, Ajwa AHA (2017) Evaluation the effect of ectomycorrhizal fungi on Prunus cerasifera x salicina (Rosaceae) growth compared with chemical and organic fertilizer. Sky J Agric Res 6:41–49

    Google Scholar 

  • Ellis JJ, Hesseltine CW (1969) Two new members of the Mucorales. Mycologia 61:863–872

    Article  Google Scholar 

  • Eriksson O (1967) On graminicolous pyrenomycetes from Fennoscandia I. Dictyosporous species (339-380). II. Phragmosporous and scolecosporous species (381-440). III. Amerosporous and didymosporous species (441-466). Arkiv før Botanik 6:339–466

    Google Scholar 

  • Eriksson O (1981) ThefamiliesofbitunicateAscomycetes. Opera Bot 60:1–220

    Google Scholar 

  • Farr DF, Rossman AY (2017) Fungal databases, systematic mycology and microbiology laboratory, ARS, USDA. http://nt.ars-grin.gov/fungaldatabases/

  • Feige GB, Ale-Agha N, Nagel B (2001) Microfungi on Rosaceae in eastern Westphalia (Sauerland, North Rhine-Westphalia, Germany). Meded Rijksuniv Gent Fak Landbouwkd Toegep Biol Wet 66:117–132

    CAS  PubMed  Google Scholar 

  • Fleming A (1929) On the antibacterial action of cultures of a Penicillium, with special reference to their use in the isolation of B. influenzae. Br J Exp Pathol 10:226–236

    CAS  PubMed Central  Google Scholar 

  • Fougere-Danezan M, Joly S, Bruneau A, Gao XF, Zhang LB (2015) Phylogeny and biogeography of wild roses with specific attention to polyploids. Ann Bot 115:275–291

    Article  CAS  PubMed  Google Scholar 

  • Frisvad JC, Samson RA (2004) Polyphasic taxonomy of Penicillium subgenus Penicillium. A guide to identification of food and air-borne terverticillate Penicillia and their mycotoxins. Stud Mycol 49:1–174

    Google Scholar 

  • Frisvad JC, Smedsgaard J, Larsen TO, Samson RA (2004) Mycotoxins, drugs and other extrolites produced by species in Penicillium subgenus Penicillium. Stud Mycol 49:201–241

    Google Scholar 

  • Fuckel L (1869) Sytnbolae mycologicae. J Niedner, iiiesbaden 1–459

  • Gafforov YS (2017) A preliminary checklist of ascomycetous microfungi from Southern Uzbekistan. Mycosphere 8:660–696

    Article  Google Scholar 

  • Gao YH, Liu F, Cai L (2016) Unravelling Diaporthe species associated with Camellia. Syst Biodivers 14:102–117

    Article  Google Scholar 

  • Gao Y, Liu F, Duan W, Crous PW, Cai L (2017) Diaporthe is paraphyletic. IMA Fungus 8:153–187

    Article  PubMed  PubMed Central  Google Scholar 

  • Geiser DM, Gueidan C, Miadlikowska J, Lutzoni F, Kauff F, Hofstetter V, Fraker E, Schoch CL, Tibell L, Untereiner WA, Aptroot A (2006) Eurotiomycetes: eurotiomycetidae and Chaetothyriomycetidae. Mycologia 98:1053–1064

    Article  PubMed  Google Scholar 

  • Giraud F, Giraud T, Aguileta G, Fournier E, Samson R, Cruaud C, Lacoste S, Ropars J, Tellier A, Dupont J (2010) Microsatellite loci to recognize species for the cheese starter and contaminating strains associated with cheese manufacturing. J Food Microbiol 137:204–213

    Article  CAS  Google Scholar 

  • Gomes RR, Glienke C, Videira SI, Lombard L, Groenewald JZ, Crous PW (2013) Diaporthe, a genus of endophytic, saprobic and plant pathogenic fungi. Persoonia 31:1–41

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acid Symp Ser 41:95–98

    CAS  Google Scholar 

  • Hashimoto A, Matsumura M, Hirayama K, Tanaka K (2017) Revision of Lophiotremataceae (Pleosporales, Dothideomycetes): Aquasubmersaceae, Cryptocoryneaceae, and Hermatomycetaceae fam. nov. Persoonia 39:51–73

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hernández-Restrepo M, Schumacher RK, Wingfield MJ, Ahmad I, Cai L, Duong TA, Edwards J, Gené J, Groenewald JZ, Jabeen S, Nasir Khalid A, Lombard L, Madrid H, Marin-Felix Y, Marincowitz S, Miller AN, Rajeshkumar KC, Rashid A, Sarwar S, Stchigel AM, Taylor PWJ, Zhou N, Crous PW (2016) Fungal systematics and evolution: FUSE 2. Sydowia 68:193–230

    Google Scholar 

  • Hibbett DS, Binder M, Bischoff JF, Blackwell M, Cannon PF, Eriksson OE, Huhndorf S, James T, Kirk PM, Lücking R, Thorsten Lumbsch H, Lutzoni F, Matheny PB, McLaughlin DJ, Powell MJ, Redhead S, Schoch CL, Spatafora JW, Stalpers JA, Vilgalys R, Aime MC, Aptroot A, Bauer R, Begerow D, Benny GL, Castlebury LA, Crous PW, Dai YC, Gams W, Geiser DM, Griffith GW, Gueidan C, Hawksworth DL, Hestmark G, Hosaka K, Humber RA, Hyde KD, Ironside JE, Kõljalg U, Kurtzman CP, Larsson KH, Lichtwardt R, Longcore J, Miadlikowska J, Miller A, Moncalvo JM, Mozley-Standridge S, Oberwinkler F, Parmasto E, Reeb V, Rogers JD, Roux C, Ryvarden L, Sampaio JP, Schüssler A, Sugiyama J, Thorn RG, Tibell L, Untereiner WA, Walker C, Wang Z, Weir A, Weiss M, White MM, Winka K, Yao YJ, Zhang N (2007a) A higher-level phylogenetic classification of the Fungi. Mycol Res 111:509–547

    Article  PubMed  Google Scholar 

  • Hibbett DS, Binder M, Bischoff JF, Blackwell M, Cannon PF, Eriksson OE, Huhndorf S, James T, Kirk PM, Lücking R, Thorsten Lumbsch H, Lutzoni F, Matheny PB, McLaughlin DJ, Powell MJ, Redhead S, Schoch CL, Spatafora JW, Stalpers JA, Vilgalys R, Aime MC, Aptroot A, Bauer R, Begerow D, Benny GL, Castlebury LA, Crous PW, Dai YC, Gams W, Geiser DM, Griffith GW, Gueidan C, Hawksworth DL, Hestmark G, Hosaka K, Humber RA, Hyde KD, Ironside JE, Kõljalg U, Kurtzman CP, Larsson KH, Lichtwardt R, Longcore J, Miadlikowska J, Miller A, Moncalvo JM, Mozley-Standridge S, Oberwinkler F, Parmasto E, Reeb V, Rogers JD, Roux C, Ryvarden L, Sampaio JP, Schüssler A, Sugiyama J, Thorn RG, Tibell L, Untereiner WA, Walker C, Wang Z, Weir A, Weiss M, White MM, Winka K, Yao YJ, Zhang N (2007b) A higher-level phylogenetic classification of the Fungi. Mycol Res 111:509–547

    Article  PubMed  Google Scholar 

  • Hirayama K, Hashimoto A, Tanaka K (2014) A new species, Lophiostoma versicolor, from Japan (Pleosporales, Dothideomycetes). Mycosphere 5:411–417

    Article  Google Scholar 

  • Hoffmann K, Pawlowska J, Walther G, Wrzosek M, de Hoog GS, Benny GL, Kirk PM, Voigt K (2013) The family structure of the Mucorales: a synoptic revision based on comprehensive multigene-genealogies. Persoonia 30:57–76

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hongsanan S, Maharachchikumbura SS, Hyde KD, Samarakoon MC, Jeewon R, Zhao Q, Al-Sadi AM, Bahkali AH (2017) An updated phylogeny of Sordariomycetes based on phylogenetic and molecular clock evidence. Fungal Divers 84:25–41

    Article  Google Scholar 

  • Houbraken J, Samson RA (2011) Phylogeny of Penicillium and the segregation of Trichocomaceae into three families. Stud Mycol 70:1–51

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Houbraken J, Wang L, Lee HB, Frisvad JC (2016) New sections in Penicillium containing novel species producing patulin, pyripyropens or other bioactive compounds. Persoonia 36:299–314

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Huang S, Jeewon R, Wanasinghe DN, Manawasinghe I, Bulgakov TS, Hyde KD, Kang J (2017) Phylogenetic taxonomy of Dematiopleospora fusiformis sp. nov. (Phaeosphaeriaceae) from Russia. Phytotaxa 316:239–249

    Article  Google Scholar 

  • Huhndorf SM (1992a) Systematics of Leptosphaeria species found on the Rosaceae. Illinois Nat Hist Surv Bull 34:479–534

    Google Scholar 

  • Huhndorf SM (1992b) Studies in Leptosphaeria. Transfer of Leptosphaeria opuntiae to Montagnula (Ascomycetes). Brittonia 44:208–212

    Article  Google Scholar 

  • Huhndorf SM, Miller AN, Fernández FA (2004) Molecular systemtatics of the Sordariales: the order and the family Lasiosphaeriaceae redefined. Mycologia 96:368–387

    Article  CAS  PubMed  Google Scholar 

  • Hummer KE, Janick J (2009) Rosaceae: taxonomy, economic importance, genomics. In: Folta KM, Gardiner SE (eds) Genetics and genomics of Rosaceae. Springer, New York, pp 1–17

    Google Scholar 

  • Hyde KD, Wong WSW, Aptroot A (2002) Marine and estuarine species of Lophiostoma and Massarina. In: Hyde KD (ed) Fungal Diversity Research Series 7: Fungi in marine environments. Hong Kong University, Hong Kong, pp 93–109

    Google Scholar 

  • Hyde KD, Jones EBG, Liu JK, Ariyawansa H, Boehm E, Boonmee S, Braun U, Chomnunti P, Crous PW, Dai DQ, Diederich P, Dissanayake A, Doilom M, Doveri F, Hongsanan S, Jayawardena R, Lawrey JD, Li YM, Liu YX, Lücking R, Monka J, Muggia L, Nelsen MP, Pang KL, Phookamsak R, Senanayake IC, Shearer CA, Suetrong S, Tanaka K, Thambugala KM, Wijayawardene NN, Wikee S, Wu HX, Zhang Y, Begoña AH, Alias SA, Aptroot A, Bahkali AH, Bezerra JL, Bhat DJ, Camporesi E, Chukea E, Gueidan C, Hawksworth DL, Hirayama K, Hoog SD, Kang JK, Knudsen K, Li WJ, Li XH, Liu ZY, Mapook A, Mckenzie EHC, Miller AN, Mortimer PE, Phillips AJL, Raja HA, Scheuer C, Schumm F, Taylor JE, Tian Q, Tibpromma S, Wanasinghe DN, Wang Y, Xu JC, Yacharoen S, Yan JY, Zang M (2013) Families of Dothideomycetes. Fungal Divers 63:1–313

    Article  Google Scholar 

  • Hyde KD, Nilsson RH, Alias SA, Ariyawansa HA, Blair JE, Cai L, de Cock AWAM, Dissanayake AJ, Glockling SL, Goonasekara ID, Gorczak M, Hahn M, Jayawardena RS, van Kan JAL, Laurence MH, Lévesque CA, Li XH, Liu JK, Maharachchikumbura SSN, Manamgoda DS, Martin FN, McKenzie EHC, McTaggart AR, Mortimer PE, Nair PVR, Pawłowska J, Rintoul TL, Shivas RG, Spies CFJ, Summerell BA, Taylor PWJ, Terhem RB, Udayanga D, Vaghefi N, Walther G, Wilk M, Wrzosek M, Xu JC, Yan JY, Zhou N (2014) One stop shop: backbones trees for important phytopathogenic genera: I. Fungal Divers 67:21–125

    Article  Google Scholar 

  • Hyde KD, Hongsanan S, Jeewon R, Bhat DJ, McKenzie EHC, Jones EBG, Phookamsak R, Ariyawansa HA, Boonmee S, Zhao Q, Abdel-Aziz FA, Abdel-Wahab MA, Banmai S, Chomnunti P, Cui BK, Daranagama DA, Das K, Dayarathne MC, de Silva NI, Dissanayake AJ, Doilom M, Ekanayaka AH, Gibertoni TB, Góes-Neto A, Huang SK, Jayasiri SC, Jayawardena RS, Konta S, Lee HB, Li WJ, Lin CG, Liu JK, Lu YZ, Luo ZL, Manawasinghe IS, Manimohan P, Mapook A, Niskanen T, Norphanphoun C, Papizadeh M, Perera RH, Phukhamsakda C, Richter C, de Santiago ALCMA, Drechsler-Santos ER, Senanayake IC, Tanaka K, Tennakoon TMDS, Thambugala KM, Tian Q, Tibpromma S, Thongbai B, Vizzini A, Wanasinghe DN, Wijayawardene NN, Wu HX, Yang J, Zeng XY, Zhang H, Zhang JF, Bulgakov TS, Camporesi E, Bahkali AH, Amoozegar AM, Araujo-Neta LS, Ammirati JF, Baghela A, Bhatt RP, Bojantchev S, Buyck B, da Silva GA, de Lima CLF, de Oliveira RJV, de Souza CAF, Dai YC, Dima B, Duong TT, Ercole E, Mafalda-Freire F, Ghosh A, Hashimoto A, Kamolhan S, Kang JC, Karunarathna SC, Kirk PM, Kytövuori I, Lantieri A, Liimatainen K, Liu ZY, Liu XZ, Lücking R, Medardi G, Mortimer PE, Nguyen TTT, Promputtha I, Raj KNA, Reck MA, Lumyong S, Shahzadeh-Fazeli SA, Stadler M, Soudi MR, Su HY, Takahashi T, Tangthirasunun N, Uniyal P, Wang Y, Wen TC, Xu JC, Zhang ZK, Zhao YC, Zhou JZ, Zhu L (2016) Fungal diversity notes 367–490: taxonomic and phylogenetic contributions to fungal taxa. Fungal Divers 80:1–270

    Article  Google Scholar 

  • Hyde KD, Norphanphoun C, Abreu VP, Bazzicalupo A, Chethana KWT, Clericuzio M, Dayarathne MC, Dissanayake AJ, Ekanayaka AH, He MQ, Hongsanan S, Huang SK, Jayasiri SC, Jayawardena RS, Karunarathna A, Konta S, Kušan I, Lee H, Li J, Lin CG, Liu NG, Lu YZ, Luo ZL, Manawasinghe IS, Mapook A, Perera RH, Phookamsak R, Phukhamsakda C, Siedlecki I, Soares AM, Tennakoon DS, Tian Q, Tibpromma S, Wanasinghe DN, Xiao YP, Yang J, Zeng XY, Abdel-Aziz FA, Li WJ, Senanayake IC, Shang QJ, Daranagama DA, De Silva NI, Thambugala KM, Abdel-Wahab MA, Bahkali AH, Berbee ML, Boonmee S, Bhat DJ, Bulgakov TS, Buyck B, Camporesi E, Castañeda-Ruiz RF, Chomnunti P, Doilom M, Dovana F, Gibertoni TB, Jadan M, Jeewon R, Jones GEB, Kang JC, Karunarathna SC, Lim YW, Liu JK, Liu ZY, Plautz HL Jr, Lumyong S, Maharachchikumbura SSN, Matočec N, Mckenzie EHC, Mešić A, Miller D, Pawłowska J, Pereira OL, Promputtha I, Romero AI, Ryvarden L, Su HY, Suetrong S, Tkalčec Z, Vizzini A, Wen TC, Wisitrassameewong K, Wrzosek M, Xu JC, Zhao Q, Zhao RL, Mortimer PE (2017) Fungal diversity notes 603–708: taxonomic and phylogenetic notes on genera and species. Fungal Divers 87:1–235

    Article  Google Scholar 

  • Index Fungorum (2017) Index Fungorum. http://www.indexfungorum.org/names/Names.asp

  • Jacobs K, Botha A (2008) Mucor renisporus sp. nov., a new coprophilous species from South Africa. Fungal Divers 29:27–35

    Google Scholar 

  • Jaklitsch WM, Voglmayr H (2016) Hidden diversity in Thyridaria and a new circumscription of the Thyridariaceae. Stud Mycol 85:35–64

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Jaklitsch WM, Voglmayr H (2017) Three former taxa of Cucurbitaria and considerations on Petrakia in the Melanommataceae. Sydowia 69:81–95

    PubMed  PubMed Central  Google Scholar 

  • Jaklitsch WM, Baral HO, Lücking R, Lumbsch HT (2016a) Ascomycota. In: Frey W (ed) Syllabus of Plant Families –Adolf Engler’s Syllabus der Pflanzenfamilien. Borntraeger, Stuttgart

    Google Scholar 

  • Jaklitsch WM, Gardiennet A, Voglmayr H (2016b) Resolution of morphology-based taxonomic delusions: Acrocordiella, Basiseptospora, Blogiascospora, Clypeosphaeria, Hymenopleella, Lepteutypa, Pseudapiospora, Requienella, Seiridium and Strickeria. Persoonia 37:82

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Jaklitsch WM, Olariaga I, Voglmayr H (2016c) Teichospora and the Teichosporaceae. Mycological Progress 15:1–20

    Article  Google Scholar 

  • Jaklitsch WM, Checa J, Blanco MN, Olariaga I, Tello S, Voglmayr H (2018) A preliminary account of the Cucurbitariaceae. Stud Mycol 90:71–118

    Article  CAS  PubMed  Google Scholar 

  • Jayasiri SC, Hyde KD, Abd-Elsalam KA, Abdel-Wahab MA, Ariyawansa HA, Bhat J, Buyck B, Dai YC, Ertz D, Hidayat I, Jeewon R, Jones EBG, Karunarathna SC, Kirk P, Lei C, Liu JK, Maharachchikumbura SSN, McKenzie E, Ghobad-Nejhad M, Nilsson H, Pang KL, Phookamsak R, Rollins AW, Romero AI, Stephenson S, Suetrong S, Tsui CKM, Vizzini A, Wen TC, De Silva NI, Promputtha I, Kang JC (2015) The Facesoffungi database: fungal names linked with morphology, molecular and human attributes. Fungal Divers 74:3–18

    Article  Google Scholar 

  • Jayasiri SC, Hyde KD, Jones EBG, Jeewon R, Ariyawansa HA, Bhat JD, Camporesi E, Kang JC (2017) Taxonomy and multigene phylogenetic evaluation of novel species in Boeremia and Epicoccum with new records of Ascochyta and Didymella (Didymellaceae). Mycosphere 8:1080–1101

    Article  Google Scholar 

  • Jeewon R, Hyde KD (2016) Establishing species boundaries and new taxa among fungi: recommendations to resolve taxonomic ambiguities. Mycosphere 7:1669–1677

    Article  Google Scholar 

  • Jeewon R, Liew EC, Simpson JA, Hodgkiss IJ, Hyde KD (2003) Phylogenetic significance of morphological characters in the taxonomy of Pestalotiopsis species. Mol Phylogenet Evol 27:372–383

    Article  CAS  PubMed  Google Scholar 

  • Jones EBG, Suetrong S, Sakayaroj J, Bahkali AH, Abdel-Wahab MA, Boekhout T, Pang KL (2015) Classification of marine Ascomycota, Basidiomycota, Blastocladiomycota and Chytridiomycota. Fungal Divers 73:1–72

    Article  Google Scholar 

  • Kalb K, Plata ER, Lücking R, Lumbsch HT (2011) The phylogenetic position of Malmidea, a new genus for the Lecidea piperis- and Lecanora granifera-groups (Lecanorales, Malmideaceae), inferred from nuclear and mitochondrial ribosomal DNA sequences, with special reference to Thai species. Bibl Lichenol 106:143–168

    Google Scholar 

  • Karahadian C, Josephson DB, Lindsay RC (1985) Volatile compounds from Penicillium sp. contributing musty-earthy notes to Brie and Camembert cheese flavors. J Agric Food Chem 33:339–343

    Article  CAS  Google Scholar 

  • Karunarathna A, Phookamsak R, Wanasinghe DN, Wijayawardene NN, Weerahewa HLD, Khan S, Wang Y (2017) Taxonomy and phylogeny of Sparticola muriformis sp. nov. on decaying grass. Mycosphere 8:603–614

    Article  Google Scholar 

  • Katoh K, Rozewicki J, Yamada KD (2017) MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics, bbx108 (https://doi.org/10.1093/bib/bbx108)

  • Kirk P (2012) Nomenclatural novelties. Index Fungorum 11:1

    Google Scholar 

  • Kirk PM, Cannon PF, David JC, Stalpers JA (2001) Ainsworth and Bisby’s dictionary of the fungi, 8th edn. CABI Publishing, London

    Google Scholar 

  • Kirk P, Cannon PF, Minter DW, Stalpers JA (2008) Ainsworth & Bisby’s dictionary of the fungi, 10th edn. CAB International, Wallingford

    Book  Google Scholar 

  • Kishino H, Hasegawa M (1989) Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J Mol Evol 29:170–179

    Article  CAS  PubMed  Google Scholar 

  • Knapp DG, Kovács GM, Zajta E, Groenewald JZ, Crous PW (2015) Dark septate endophytic pleosporalean genera from semiarid areas. Persoonia 35:87–100

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Konta S, Hongsanan S, Tibpromma S, Thongbai B, Maharachchikumbura SSN, Bahkali AH, Hyde KD, Boonmee S (2016) An advance in the endophyte story: Oxydothidaceae fam. nov. with six new species of Oxydothis. Mycosphere 7:1425–1446

    Article  Google Scholar 

  • Konta S, Hongsanan S, Eungwanichayapant PD, Liu JK, Jeewon R, Hyde KD, Maharachchikumbura SSN, Boonmee S (2017) Leptosporella (Leptosporellaceae fam. nov.) and Linocarpon and Neolinocarpon (Linocarpaceae fam. nov.) are accommodated in Chaetosphaeriales. Mycosphere 8:1943–1974

    Article  Google Scholar 

  • Körber GW (1855) Systema lichenum Germaniae, pp 1–458

  • Kruys A, Wedin M (2009) Phylogenetic relationships and an assessment of traditionally used taxonomic characters in the Sporormiaceae (Pleosporales, Dothideomycetes, Ascomycota), utilising multi-gene phylogenies. Syst Biodivers 7:465–478

    Article  Google Scholar 

  • Kuraku S, Zmasek CM, Nishimura O, Katoh K (2013) aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity. Nucleic Acids Res 41:W22–W28

    Article  PubMed  PubMed Central  Google Scholar 

  • Lee YS, Jung HY, Lee HB, Kim SH, Shin KS, Eom AH, Kim C, Lee SY (2015) National list of species of Korea. Ascomycota, Glomeromycota, Zygomycota, Myxomycota, Oomycota. Incheon: National Institute of Biological Resources. Korean Society of Mycology

  • Li Y, Cui F, Liu Z, Xu Y, Zhao H (2007) Improvement of xylanase production by Penicillium oxalicum ZH-30 using response surface methodology. Enzyme and Microbial Technology 40:1381–1388

    Article  CAS  Google Scholar 

  • Li WJ, Bhat DJ, Camporesi E, Tian Q, Wijayawardene NN, Dai DQ, Phookamsak R, Chomnunti P, Bahkali AH, Hyde KD (2015a) New asexual morph taxa in Phaeosphaeriaceae. Mycosphere 6:681–708

    Article  Google Scholar 

  • Li WJ, Maharachchikumbura SS, Li QR, Bhat JD, Camporesi E, Tian Q, Senanayake IC, Dai DQ, Chomnunti P, Hyde KD (2015b) Epitypification of Broomella vitalbae and introduction of a novel species of Hyalotiella. Cryptogam Mycol 36(1):93–108

    Article  Google Scholar 

  • Li J, Phookamsak R, Mapook A, Boonmee S, Bhat JD, Hyde KD, Lumyong S (2016a) Seifertia shangrilaensis sp. nov. (Melanommataceae), a new species from Southwest China. Phytotaxa 273(1):34–42

  • Li GJ, Hyde KD, Zhao RN, Hongsanan S, Abdel-Aziz FA, Abdel-Wahab MA, Alvarado P, Alves-Silva G, Ammirati JF, Ariyawansa HA, Baghela A, Bahkali AH, Beug M, Bhat DJ, Bojantchev D, Boonpratuang T, Bulgakov TS, Camporesi E, Boro MC, Ceska O, Chakraborty D, Chen JJ, Chethana KWT, Chomnunti P, Consiglio G, Cui BK, Dai DQ, Dai YC, Daranagama DA, Das K, Dayarathne MC, Crop ED, De Oliveira RJV, de Souza CAF, de Souza JI, Dentinger BTM, Dissanayake AJ, Doilom M, Drechsler-Santos ER, Ghobad-Nejhad M, Gilmore SP, Go´es-Neto A, Gorczak M, Haitjema GH, Hapuarachchi KK, Hashimoto A, He MQ, Henske JK, Hirayama K, Iribarren MJ, Jayasiri SC, Jayawardena RS, Jeon SJ, Jeroˆnimo GH, Jesus AL, Jones EBG, Kang JC, Karunarathna SC, Kirk PM, Konta S, Kuhnert E, Langer E, Lee HS, Lee HB, Li WJ, Li XH, Liimatainen K, Lima DX, Lin CG, Liu JK, Liu XZ, Liu ZY, Luangsa-ard JJ, Lu¨cking R, Lumbsch HT, Lumyong S, Lean˜o EM, Marano AV, Matsumura M, McKenzie EHC, Mongkolsamrit S, Mortimer PE, Nguyen TTT, Niskanen T, Norphanphoun C, O’Malley MA, Parnmen S, Pawłowska J, Perera RH, Phookamsak R, Phukhamsakda C, Pires-Zottarelli CLA, Raspe´ O, Reck MA, Rocha SCO, de Santiago ALCMA, Senanayake IC, Setti L, Shang QJ, Singh SK, Sir EB, Solomon KV, Song J, Srikitikulchai P, Stadler M, Suetrong S, Takahashi H, Takahashi T, Tanaka K, Tang LP, Thambugala KM, Thanakitpipattana D, Theodorou MK, Thongbai B, Thummarukcharoen T, Tian Q, Tibpromma S, Verbeken A, Vizzini A, Vlasa´k J, Voigt K, Wanasinghe DN, Wang Y, Weerakoon G, Wen HA, Wen TC, Wijayawardene NN, Wongkanoun S, Wrzosek M, Xiao YP, Xu JC, Yan JY, Yang J, Yang SD, Hu Y, Zhang JF, Zhao J, Zhou LW, Persoh D, Phillips AJL, Maharachchikumbura SSN (2016b) Fungal Divers notes 253–366:Taxonomic and phylogenetic contributions to fungal taxa. Fungal Divers 78:1–237

  • Lima DX, Voigt K, De Souza CA, De Oliveira RJ, Souza-Motta CM, Santiago ALDA (2016) Description of Backusella constricta sp. nov. (Mucorales, ex Zygomycota) from the Brazilian Atlantic Rainforest, including a key to species of Backusella. Phytotaxa 289(1):59–68

  • Liu JK, Hyde KD, Jones EBG, Ariyawansa HA, Bhat DJ, Boonmee S, Maharachchikumbura S, McKenzie EHC, Phookamsak R, Phukhamsakda C, Shenoy BD, Abdel-Wahab MA, Buyck B, Chen J, Chethana KWT, Singtripop C, Dai DQ, Dai YC, Daranagama DA, Dissanayake AJ, Doliom M, D’souza MJ, Fan XL, Goonasekara ID, Hirayama K, Hongsanan S, Jayasiri SC, Jayawardena RS, Karunarathna SC, Li WJ, Mapook A, Norphanphoun C, Pang KL, Perera RH, Peršoh D, Pinruan U, Senanayake IC, Somrithipol S, Suetrong S, Tanaka K, Thambugala KM, Tian Q, Tibpromma S, Udayanga D, Wijayawardena NN, Wanasinghe D, Wisitrassameewong K, Abdel-Aziz FA, Adamčík S, Bahkali AH, Boonyuen N, Bulgakov T, Callac P, Chomnunti P, Greiner K, Hashimoto A, Hofstetter V, Kang JC, Lewis D, Li XH, Liu XX, Liu ZY, Matumura M, Mortimer PE, Rambold G, Randrianjohany E, Sato G, Sri-Indrasutdhi V, Tian CM, Verbeken A, von Brackel W, Wang Y, Wen TC, Xu JC, Yan JY, Zhao RL, Camporesi E (2015) Fungal diversity notes 1–110: taxonomic and phylogenetic contributions to fungal species. Fungal Divers 72:1–197

    Article  CAS  Google Scholar 

  • Liu JK, Hyde KD, Jeewon R, Phillips AJ, Maharachchikumbura SS, Ryberg M, Liu ZY, Zhao Q (2017) Ranking higher taxa using divergence times: a case study in Dothideomycetes. Fungal Divers 84:75–99

    Article  Google Scholar 

  • Lopes A, Barradas C, Phillips AJL, Alves A (2016) Diversity and phylogeny of Neofusicoccum species occurring in forest and urban environments in Portugal. Mycosphere 7:906–920

    Article  Google Scholar 

  • López-Díaz TM, Santos JA, García-López ML, Otero A (2001) Surface mycoflora of a Spanish fermented meat sausage and toxigenicity of Penicillium isolates. Int J Food Microbiol 68:69–74

    Article  PubMed  Google Scholar 

  • Lücking R, Hodkinson BP, Leavitt SD (2016) The 2016 classification of lichenized fungi in the Ascomycota and Basidiomycota—approaching one thousand genera. Bryologist 119:361–416

    Article  Google Scholar 

  • Ludemann V, Greco M, Rodríguez MP, Basílico JC, Pardo AG (2010) Conidial production by Penicillium nalgiovense for use as starter cultures in dry fermented sausages by solid state fermentation. LWT Food Sci Technol 43:315–318

    Article  CAS  Google Scholar 

  • Luo J, Yin J, Cai L, Zhang KQ, Hyde KD (2004) Freshwater fungi in Lake Dianchi, a heavily polluted lake in Yunnan, China. Fungal Divers 16:93–112

    Google Scholar 

  • Luo ZL, Bahkali AH, Liu XY, Phookamsak R, Zhao YC, Zhou DQ, Su HY, Hyde KD (2016) Poaceascoma aquaticum sp. nov. (Lentitheciaceae), a new species from submerged bamboo in freshwater. Phytotaxa 253:71–80

    Article  Google Scholar 

  • Luttrell ES (1955) The ascostromatci Ascomycetes. Mycologia 47:511–532

    Article  Google Scholar 

  • Maharachchikumbura SSN, Guo LD, Cai L, Chukeatirote E, Wu WP, Sun X, Crous PW, Bhat DJ, McKenzie EHC, Bahkali AH, Hyde KD (2012) A multi-locus backbone tree for Pestalotiopsis, with a polyphasic characterization of 14 new species. Fungal Divers 56:95–129

    Article  Google Scholar 

  • Maharachchikumbura SS, Hyde KD, Jones EBG, McKenzie EHC, Huang SK, Abdel-Wahab MA, Daranagama DA, Dayarathne M, D’souza MJ, Goonasekara ID, Hongsanan S, Jayawardena RS, Kirk PM, Konta S, Liu JK, Liu ZY, Norphanphoun C, Pang KL, Perera RH, Senanayake IC, Shang Q, Shenoy BD, Xiao YP, Bahkali AH, Kang JC, Somrothipol S, Suetrong S, Wen TC, Xu JC (2015) Towards a natural classification and backbone tree for Sordariomycetes. Fungal Divers 72:199–301

    Article  Google Scholar 

  • Maharachchikumbura SSN, Hyde KD, Jones EBG, McKenzie EHC, Bhat DJ, Dayarathne MC, Huang SK, Norphanphoun C, Senanayake IC, Perera RH, Shang QJ, Xiao YP, D’souza MJ, Hongsanan S, Jayawardena RS, Daranagama DA, Konta S, Goonasekara ID, Zhuang WY, Jeewon R, Phillips AJL, Abdel-Wahab MA, Al-Sadi AM, Bahkali AH, Boonmee S, Boonyuen N, Cheewangkoon R, Dissanayake AJ, Kang JC, Li QR, Liu JK, Liu XZ, Liu ZY, Luangsa-ard JJ, Pang KL, Phookamsak R, Promputtha I, Suetrong S, Stadler M, Wen TC, Wijayawardene NN (2016) Families of Sordariomycetes. Fungal Divers 79:1–317

    Article  Google Scholar 

  • Mahoney D, Gama W, Meyer W, Starinkwillemse M (2004) Umbelopsis dimorpha sp. nov., a link between U. vinacea and U. versiformis. Mycol Res 108:107–111

    Article  PubMed  Google Scholar 

  • Marincowitz S, Gryzenhout M, Wingfield MJ (2010) New and rare coelomycetes with appendage-bearing conidia from Pondoland, South Africa. Mycotaxon 111:309–322

    Article  Google Scholar 

  • Matsushima T (1975) Icones microfungorum a Matushima lectorum. Publ. by the author, Kobe

    Google Scholar 

  • Matsushima T (1996) Matsushima mycological memoirs 9. Matsushima Mycol Mem 9:1–30

    Google Scholar 

  • Mayrhofer H, Moberg R (2002) Amandinea. In: Nordic Lichen Flora (ed) Physciaceae (Ahti T, Jørgensen PM, Kristinsson H, Moberg R, Søchting U, Thor G, eds), vol 2. Nordic Lichen Society, Uddevalla, Sweden, pp 7–9

  • Menon R (1956) Studies on Venturiaceae on rosaceous plants. Phytopathol Z 27:117–146

    Google Scholar 

  • Meyer W, Gams W (2003) Delimitation of Umbelopsis (Mucorales, Umbelopsidaceae fam. nov.) based on ITS sequence and RFLP data. Mycol Res 107:339–350

    Article  CAS  PubMed  Google Scholar 

  • Miadlikowska J, Kauff F, Högnabba F, Oliver JC, Molnár K, Fraker E, Gaya E, Hafellner J, Hofstetter V, Gueidan C, Otálora MAG, Hodkinson B, Kukwa M, Lücking R, Björk C, Sipman HJM, Burgaz AR, Thell A, Passo A, Myllys L, Goward T, Fernández-Brime S, Hestmark G, Lendemer J, Lumbsch T, Schmull M, Schoch CL, Sérusiaux E, Maddisons DR, Arnold AE, Lutzoni F, Stenroos S (2014) A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families. Mol Phyl Evol 79:132–168

    Article  Google Scholar 

  • Miller MA, Pfeiffer W, Schwartz T (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: Proceedings of the gateway computing environments workshop (GCE) 14 Nov 2010. Institute of Electrical and Electronics Engineers, New Orleans, LA, pp 1–8

  • Mir RA, Wani AH, Bandh SA, un-Nisa T, Pala SA (2012) Incidence and severity of powdery mildew fungi on some plants of Asteraceae and Rosaceae in Kashmir Himalayas. Arch Appl Sci Res 4:353–359

    Google Scholar 

  • Mirzaei S, Moghadam JN, Khaledi E, Abdollahzadeh J, Amini J, Abrinbana M (2015) Molecular and morphological characterization of Endoconidioma populi from Kurdistan province, Iran. Mycol Iran 2:127–133

    Google Scholar 

  • Mugambi GK, Huhndorf SM (2009) Molecular phylogenetics of Pleosporales: Melanommataceae and Lophiostomataceae recircumscribed (Pleosporomycetidae, Dothideomycetes, Ascomycota). Stud Mycol 64:103–121

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Munk A (1953) The system of the Pyrenomycetes. A contribution to a natural classification of the group Sphaeriales sensu Lindau. Dansk Botanisk Arkiv 15:1–163

    Google Scholar 

  • Munk A (1957) Danish Pyrenomycetes. Dan Bot Ark 17:1–491

    Google Scholar 

  • Nag Raj TR (1993) Coelomycetous anamorphs with appendage-bearing conidia. Mycologue Publications, Waterloo

    Google Scholar 

  • Nannfeldt JA (1932) Studien über die Morphologie und Systematikder nicht-lichenisierten, inoperculaten Discomyceten. Nova Acta R Soc Sci Upsaliensis Ser 6:1–368

    Google Scholar 

  • Nees von Esenbeck CG (1816) Das system der pilze und schwämme. Wurzburg, Germany

    Google Scholar 

  • Nees von Esenbeck CGD (1817) System der Pilze und Schwämme. Würzburg, Germany

    Google Scholar 

  • Nelson JH (1970) Production of blue cheese flavor via submerged fermentation by Penicillium roqueforti. J Agric Food Chem 18:567–569

    Article  CAS  Google Scholar 

  • Nguyen TTT, Lee HB (2016) Isolation and characterization of Blakeslea trispora isolated from gut of grasshopper and soldier fly larva in Korea. Korean J Mycol 44:355–359

    Article  Google Scholar 

  • Nguyen TTT, Duong TT, Lee HB (2016a) Characterization of two new records of mucoralean species isolated from gut of soldier fly larva in Korea. Mycobiology 44:310–313

    Article  PubMed  PubMed Central  Google Scholar 

  • Nguyen TTT, Lee SH, Bae S, Jeong SJ, Mun HY, Lee HB (2016b) Characterization of two new records of zygomycete species belonging to undiscovered taxa in Korea. Mycobiology 44:29–37

    Article  PubMed  PubMed Central  Google Scholar 

  • Nitschke TRJ (1869) Grundlage eines systems der Pyrenomyceten. Verhandlungen des Naturhistorischen Vereins der Preussischen Rheinlande, Westfalens und des Regierungsbezirks Osnabrück 26:70–77

    Google Scholar 

  • Nitschke T (1870) Pyrenomycetes Germanici. Breslau, Eduard Trewendt, Germany 2:161–320

    Google Scholar 

  • Norphanphoun C, Maharachchikumbura SSN, Daranagama A, Bulgakov TS, Bhat DJ, Bahkali AH, Hyde KD (2015) Towards a backbone tree for Seimatosporium, with S. physocarpi sp. nov. Mycosphere 6:385–400

    Article  Google Scholar 

  • Norphanphoun C, Doilom M, Daranagama DA, Phookamsak R, Wen TC, Bulgakov TS, Hyde KD (2017) Revisiting the genus Cytospora and allied species. Mycosphere 8:51–97

    Article  Google Scholar 

  • Nylander JAA, Wilgenbusch JC, Warren DL, Swofford DL (2008) AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 24:581–583

    Article  CAS  PubMed  Google Scholar 

  • O’Donnell K, Lutzoni FM, Ward TJ, Benny GL (2001) Evolutionary relationships among mucoralean fungi (Zygomycota): evidence for family polyphyly on a large scale. Mycologia 93:286–296

    Article  Google Scholar 

  • Perera RH, Maharachchikumbura SSN, Bahkali AH, Camporesi E, Jones EBG, Phillips AJL, Hyde KD (2016) Sexual morph of Seimatosporium cornii found on Cornus sanguinea in Italy. Phytotaxa 257:051–060

    Article  Google Scholar 

  • Phillips AJL, Alves A, Abdollahzadeh J, Slippers B, Wingfield MJ, Groenewald JZ, Crous PW (2013) The Botryosphaeriaceae: genera and species known from culture. Stud Mycol 76:51–167

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Phipps JB (2014) Flora of North America North of Mexico, Magnoliophyta: Picramniaceae to Rosaceae., vol 9. Oxford University Press, New York

  • Phookamsak R, Liu JK, McKenzie EH, Manamgoda DS, Ariyawansa H, Thambugala KM, Dai DQ, Camporesi E, Chukeatirote E, Wijayawardene NN, Bahkali AH (2014) Revision of Phaeosphaeriaceae. Fungal Divers 68:159–238

    Article  Google Scholar 

  • Phookamsak R, Li WJ, Dai DQ, Singtripop C, Hyde KD (2015a) Poaceascoma gen et sp. nov., a new genus with scolecospores in Lentitheciaceae. Cryptogamie Mycol 36:225–236

    Article  Google Scholar 

  • Phookamsak R, Norphanphoun C, Tanaka K, Dai DQ, Luo ZL, Liu JK, Su HY, Bhat DJ, Bahkali AH, Mortimer PE, Xu JC, Hyde KD (2015b) Towards a natural classification of Astrosphaeriella-like species; introducing Astrosphaeriellaceae and Pseudoastrosphaeriellaceae fam. nov. and Astrosphaeriellopsis, gen. nov. Fungal Divers 74:143–197

    Article  Google Scholar 

  • Phookamsak R, Wanasinghe DN, Hongsanan S, Phukhamsakda C, Huang SK, Tennakoon DS, Norphanphoun C, Camporesi E, Bulgakov TS, Promputa I, Mortimer PE, Xu JC (2017) Towards a natural classification of Ophiobolus and ophiobolus-like taxa; introducing three novel genera Ophiobolopsis, Paraophiobolus and Pseudoophiobolus in Phaeosphaeriaceae (Pleosporales). Fungal Divers 87:299–339

    Article  Google Scholar 

  • Pidoplichko NM, Milko AA (1971) Atlas of mucoralean fungi. Kiev, Academic science Ukranian SSR, p 188

    Google Scholar 

  • Pitt JI (1980) The genus Penicillium and its teleomorphic states Eupenicillium and Talaromyces. Academic Press, London

    Google Scholar 

  • Prieto M, Wedin M (2016) Phylogeny, taxonomy and diversification events in the Caliciaceae. Fungal Divers 82:221–238

    Article  Google Scholar 

  • Quaedvlieg W, Verkley GJM, Shin HD, Barreto RW, Alfenas AC, Swart WJ, Groenewald JZ, Crous PW (2013) Sizing up Septoria. Stud Mycol 75:307–390

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Rambaut A (2014) FigTree v1.4: Tree figure drawing tool. http://treebio.ed.ac.uk/software/figtree/

  • Rambaut A, Drummond AJ (2003) Tracer: MCMC trace analysis tool. University of Oxford, Oxford

    Google Scholar 

  • Rannala B, Yang Z (1996) Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. J Mol Evol 43:304–311

    Article  CAS  PubMed  Google Scholar 

  • Raper KB, Thom C (1949) A manual of the penicillia. The Williams & Wilkins Company, Baltimore

    Google Scholar 

  • Rayner RW (1970) A mycological colour chart. Commonwealth Mycological Institute, UK

    Google Scholar 

  • Riess MLC (1854) Neue Kernpilze. Hedwigia 1:23–28

    Google Scholar 

  • Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574

    Article  CAS  PubMed  Google Scholar 

  • Rossman AY, Farr DF, Castlebury LA (2007) A review of the phylogeny and biology of the Diaporthales. Mycoscience 48:135–144

    Article  Google Scholar 

  • Rossman AY, Adams GC, Cannon PF, Castlebury LA, Crous PW, Gryzenhout M, Jaklitsch WM, Mejia LC, Stoykov D, Udayanga D, Voglmayr H (2015) Recommendations of generic names in Diaporthales competing for protection or use. IMA Fungus 6:145–154

    Article  PubMed  PubMed Central  Google Scholar 

  • Rovná K, Bakay L, Petrová J, Terentjeva M, Černá J, Kačániová M (2015) Characterization of endophytic microflora of Rosa canina fruits. J Microbiol Biotech Food Sci 4:65–68

    Article  Google Scholar 

  • Saccardo PA (1883) Pyrenomyceteae. Sylloge Fungorum Omnium Hucusque Cognitorum 2:1–813

    Google Scholar 

  • Saccardo PA (1892) Supplementum Universale, Pars II. Discomyceteae-Hyphomyceteae. Sylloge Fungorum 10:1–964

    Google Scholar 

  • Sakalidis ML, Hardy GSJ, Burgess TI (2011) Class III endophytes, clandestine movement amongst hosts and habitats and their potential for disease; a focus on Neofusicoccum australe. Australas Plant Pathol 40:510–521

    Article  Google Scholar 

  • Salgado-Salazar C, Cepero MC, Realpe E, Restrepo S (2008) Histological analyses of the fungal endophytes in Rosa hybrida. Rev Iberoam Micol 24:323–324

    Article  Google Scholar 

  • Samarakoon MC, Gafforov Y, Liu N, Maharachchikumbura SSN, Bhat JD, Liu J-K, Promputtha I, Hyde KD (2018) Combined multi-gene backbone tree for the genus Coniochaeta with two new species from Uzbekistan. Phytotaxa 336:43–58

    Article  Google Scholar 

  • Samson RA, Houbraken J, Thrane U (2010) Food and indoor fungi. Utrecht, CBS KNAW Biodiversity Center

    Google Scholar 

  • Santiago ALCMA, Trufem SFB, Malosso E, Santos PJP, Cavalcanti MAQ (2011) Zygomycetes from herbivore dung in the ecological reserve of Dois Irmãos, Northeast Brazil. Braz J Microbiol 42:89–95

    Article  Google Scholar 

  • Santos L, Phillips AJL, Crous PW, Alves A (2017) Diaporthe species on Rosaceae with descriptions of D. pyracanthae sp. nov. and D. malorum sp. nov. Mycosphere 8:485–511

    Article  Google Scholar 

  • Scheidegger C (1993) A revision of the European saxicolous species of the genus Buellia De Not. and formerly included genera. Lichenologist 25:315–364

    Article  Google Scholar 

  • Schipper MAA, Samson RA (1978) One certain species of Mucor with a key to all accepted species. Stud Mycol 17:1–52

    Google Scholar 

  • Schoch CL, Shoemaker RA, Seifert KA, Hambleton S, Spatafora JW, Crous PW (2006) A multigene phylogeny of the Dothideomycetes using four nuclear loci. Mycologia 98:1041–1052

    Article  CAS  PubMed  Google Scholar 

  • Seifert K, Morgan-Jones G, Gams W, Kendrick B (2011) The genera of hyphomycetes. CBS Biodiversity Series No. 9: 1–997. CBS-KNAW Fungal Biodiversity Centre, Utrecht, Netherlands

  • Senanayake IC, Maharachchikumbura SSN, Hyde KD, Bhat JD, Jones EBG, McKenzie EHC, Dai DQ, Daranagama DA, Dayarathne MC, Goonasekara ID, Konta S, Li WJ, Shang QJ, Stadler M, Wijayawardene NN, Xiao YP, Norphanphoun C, Li Q, Liu XZ, Bahkali AH, Kang JC, Wang Y, Wen TC, Wendt L, Xu JC, Camporesi E (2015) Towards unraveling relationships in Xylariomycetidae (Sordariomycetes). Fungal Divers 73:73–144

    Article  Google Scholar 

  • Senanayake IC, Crous PW, Groenewald JZ, Maharachchikumbura SSN, Jeewon R, Phillips AJL, Bhat JD, Perera RH, Li QR, Li WJ, Tangthirasunun N (2017) Families of Diaporthales based on morphological and phylogenetic evidence. Stud Mycol 86:217–296

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Shoemaker RA, Babcock CE (1989) Phaeosphaeria. Can J Bot 67:1500–1599

    Article  Google Scholar 

  • Shoemaker RA, Müller E (1963) Generic correlations and concepts: Broomella and Pestalotia. Can J Bot 41:1235–1243

    Article  Google Scholar 

  • Slippers B, Roux J, Wingfield MJ, van der Walt FJJ, Jami F, Mehl JWM, Marais GJ (2014) Confronting the constraints of morphological taxonomy in the Botryosphaeriales. Persoonia 33:155–168

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Spatafora JW, Chang Y, Benny GL, Lazarus K, Smith ME, Berbee ML, Bonito G, Corradi N, Grigoriev I, Gryganskyi A, James TY, O’Donnell K, Roberson RW, Taylor TN, Uehling J, Vilgalys R, White MM, Stajich JE (2016) A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data. Mycologia 108:1028–1046

    Article  PubMed  Google Scholar 

  • Spegazzini C (1910) Mycetes Argentinenses (Series V). Anales del Museo Nacional de Historia Natural, Buenos Aires 20:329–467

    Google Scholar 

  • Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood- based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688–2690

    Article  CAS  PubMed  Google Scholar 

  • Stamatakis A (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30:1312–1313

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Su HY, Luo ZL, Liu XY, Su XJ, Hu DM, Zhou DQ, Bahkali AH, Hyde KD (2016) Lentithecium cangshanense sp. nov. (Lentitheciaceae) from freshwater habitats in Yunnan Province, China. Phytotaxa 267:61–69

    Article  Google Scholar 

  • Sutton BC (1975) Wojnowicia and Angiopomopsis. Ceska Mykologie 29:97–104

    Google Scholar 

  • Sutton BC (1980) The coelomycetes. Fungi Imperfecti with pycnidia acervuli and stromata. Commonwealth Mycological Insitute, Kew, pp 1–696

    Google Scholar 

  • Takada M, Udagawa S (1983) Two new species of Eupenicillium from Nepalese soil. Trans Mycol Soc Japan 24:143–150

    Google Scholar 

  • Tanabe Y, Saikawa M, Watanabe MM, Sugiyama J (2003) Molecular phylogeny of Zygomycota based on EF-1α and RPB1 sequences: limitations and utility of alternative markers to rDNA. Mol Phylogenet Evol 30:438–449

    Article  CAS  Google Scholar 

  • Tanaka K, Harada Y (2003) Pleosporales in Japan (1): the genus Lophiostoma. Mycoscience 44:85–96

    Article  Google Scholar 

  • Tanaka K, Harada Y (2004) Pleosporales in Japan (4). The genus Massariosphaeria. Mycoscience 45:96–105

    Article  Google Scholar 

  • Tanaka K, Endo M, Hirayama K, Okane I, Hosoya T, Sato T (2011) Phylogeny of Discosia and Seimatosporium, and introduction of Adisciso and Immersidiscosia genera nova. Persoonia 26:85–98

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Tanaka K, Hirayama K, Yonezawa H, Sato G, Toriyabe A, Kudo H, Hashimoto A, Matsumura M, Harada Y, Kurihara Y, Shirouzu T (2015) Revision of the Massarineae (Pleosporales, Dothideomycetes). Stud Mycol 82:75–136

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Tassi F (1900) Bartalinia Fl. Tassi. Nuovo genere di Sphaeropsidaceae. Boll Laboratorio Bot R Univ Siena 3:3–5

    Google Scholar 

  • Terrasan CRF, Temer B, Duarte MCT, Carmona EC (2010) Production of xylanolytic enzymes by Penicillium janczewskii. Bioresour Technol 101:4139–4143

    Article  CAS  PubMed  Google Scholar 

  • Thambugala KM, Ariyawansa HA, Li YM, Boonmee S, Hongsanan S, Tian Q, Singtripop C, Bhat DJ, Camporesi E, Jayawardena R, Liu ZY, Xu JC, Chukeatirote E, Hyde KD (2014) Dothideales. Fungal Divers 68:105–158

    Article  Google Scholar 

  • Thambugala KM, Hyde KD, Tanaka K, Tian Q, Wanasinghe DN, Ariyawansa HA, Jayasiri SC, Boonmee S, Camporesi E, Hashimoto A, Hirayama K, Schumacher RK, Promputtha I, Liu ZY (2015) Towards a natural classification and backbone tree for Lophiostomataceae, Floricolaceae, and Amorosiaceae fam. nov. Fungal Divers 74:199–266

    Article  Google Scholar 

  • Thambugala KM, Daranagama DA, Phillips AJ, Bulgakov TS, Bhat DJ, Camporesi E, Bahkali AH, Eungwanichayapant PD, Liu ZY, Hyde KD (2017a) Microfungi on Tamarix. Fungal Divers 82:239–306

    Article  Google Scholar 

  • Thambugala KM, Wanasinghe DN, Phillips AJL, Camporesi E, Bulgakov TS, Phukhamsakda C, Ariyawansa HA, Goonasekara ID, Phookamsak R, Dissanayake A, Tennakoon DS, Tibpromma S, Chen YY, Liu ZY, Hyde KD (2017b) Mycosphere notes 1-50: grass (Poaceae) inhabiting Dothideomycetes. Mycosphere 8:697–796

    Article  Google Scholar 

  • Thom C (1906) Fungi in cheese ripening: Camembert and Roquefort. U.S. Department of Agriculture, Bureau of Animal Industry –. Bulletin 82:1–39

    Google Scholar 

  • Thom C (1945) Mycology present penicillin. Mycologia 37:460–475

    Article  Google Scholar 

  • Thompson SM, Tan YP, Shivas RG, Neate SM (2015) Green and brown bridges between weeds and crops reveal novel Diaporthe species in Australia. Persoonia 35:39–49

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Tian Q, Liu JK, Hyde KD, Wanasinghe DN, Boonmee S, Jayasiri SC, Luo ZL, Taylor JE, Phillips AJL, Bhat DJ, Li WJ, Ariyawansa H, Thambugala KM, Jones EBG, Chomnunti P, Bahkali AH, Xu JC, Camporesi E (2015) Phylogenetic relationships and morphological reappraisal of Melanommataceae (Pleosporales). Fungal Divers 74:267–324

    Article  Google Scholar 

  • Tibpromma S, Hyde KD, Jeewon R, Maharachchikumbura SSN, Liu JK, Bhat DJ, Jones EBG, McKenzie EHC, Camporesi E, Bulgakov TS, Doilom M, de Azevedo Santiago ALCM, Das K, Manimohan P, Gibertoni TB, Lim YW, Ekanayaka AH, Thongbai B, Lee HB, Yang JB, Kirk PM, Sysouphanthong P, Singh SK, Boonmee S, Dong W, Raj KNA, Latha KPD, Phookamsak R, Phukhamsakda C, Konta S, Jayasiri SC, Norphanphoun C, Tennakoon DS, Li JF, Dayarathne MC, Perera RH, Xiao Y, Wanasinghe DN, Senanayake IC, Goonasekara ID, de Silva NI, Mapook A, Jayawardena RS, Dissanayake AJ, Manawasinghe IS, Chethana KWT, Luo ZL, Hapuarachchi KK, Baghela A, Soares AM, Vizzini A, Meiras-Ottoni A, Mešić A, Dutta AK, de Souza CAF, Richter C, Lin CG, Chakrabarty D, Daranagama DA, Lima DX, Chakraborty D, Ercole E, Wu F, Simonini G, Vasquez G, da Silva GA, Plautz HL Jr, Ariyawansa HA, Lee H, Kušan I, Song J, Sun J, Karmakar J, Hu K, Semwal KC, Thambugala KM, Voigt K, Acharya K, Rajeshkumar KC, Ryvarden L, Jadan M, Hosen MI, Mikšík M, Samarakoon MC, Wijayawardene NN, Kim NK, Matočec N, Singh PN, Tian Q, Bhatt RP, de Oliveira RJV, Tulloss RE, Aamir S, Kaewchai S, Svetasheva STY, Nguyen TTT, Antonín V, Li WJ, Wang Y, Indoliya Y, Tkalčec Z, Elgorban AM, Bahkali AH, Tang AMC, Su HY, Zhang H, Promputtha I, Luangsa-ard J, Xu JC, Yan J, Chuan KJ, Stadler M, Mortimer PE, Chomnunti P, Zhao Q, Phillips AJL, Nontachaiyapoom S, Wen TC, Karunarathna SC (2017) Fungal diversity notes 491–602: taxonomic and phylogenetic contributions to fungal taxa. Fungal Divers 83:1–261

    Article  Google Scholar 

  • Tsopelas P, Barnes I, Wingfield MJ, Xenopoulos S (2007) Seiridium cardinale on Juniperus species in Greece. For Pathol 37:338–347

    Article  Google Scholar 

  • Tsuneda A, Hambleton S, Currah RS (2004) Morphology and phylogenetic placement of Endoconidioma, a new endoconidial genus from trembling aspen. Mycologia 96:1128–1135

    Article  CAS  PubMed  Google Scholar 

  • Tsuneda A, Hambleton S, Currah RS (2010) Endoconidioma populi from aspen and alder: phylogeny, and variations in cleistopycnidial morphology and their ecological implications. Botany 88:675–684

    Article  CAS  Google Scholar 

  • Udagawa S, Horie Y (1973) Some Eupenicillium from soils of New Guinea. Trans Mycol Soc Japan 14:370–387

    Google Scholar 

  • Udayanga D, Liu X, McKenzie EHC, Chukeatirote E, Bahkali AHA, Hyde KD (2011) The genus Phomopsis, biology, applications, species concepts and names of common pathogens. Fungal Divers 50:189–225

    Article  Google Scholar 

  • Udayanga D, Liu X, Crous PW, McKenzie EHC, Chukeatirote E, Hyde KD (2012) A multi-locus phylogenetic evaluation of Diaporthe (Phomopsis). Fungal Divers 56:157–171

    Article  Google Scholar 

  • Udayanga D, Castlebury LA, Rossman AY, Hyde KD (2014) Species limits in Diaporthe: molecular re-assessment of D. citri, D. cytosporella, D. foeniculina and D. rudis. Persoonia 32:83–101

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Udayanga D, Castlebury LA, Rossman AY, Chukeatirote E, Hyde KD (2015) The Diaporthe sojae species complex, phylogenetic re-assessment of pathogens associated with soybean, cucurbits and other field crops. Fungal Biol 119:383–407

    Article  PubMed  Google Scholar 

  • Van TP (1876) Troisième mémoire sur les Mucorinées. Ann Sci Nat VI 4:312–399

    Google Scholar 

  • Visagie CM, Houbraken J, Rodriques C, Pereira SC, Dijksterhuis J, Seifert KA, Jacobs K, Samson RA (2013) Five new Penicillium species in section Sclerotiora: a tribute to the Dutch Royal family. Persoonia 31:42–62

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Visagie CM, Houbraken J, Frisvad JC, Hong S-B, Klaassen CHW, Perrone G, Seifert KA, Varga J, Yaguchi T, Samson RA (2014) Identification and nomenclature of the genus Penicillium. Stud Mycol 78:343–371

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Voglmayr H, Friebes G, Gardiennet A, Jaklitsch WM (2017) Barrmaelia and Entosordaria in Barrmaeliaceae (fam. nov., Xylariales) and critical notes on Anthostomella-like genera based on multigene phylogenies. Mycol Prog 1–23

  • Voigt K, Wöstemeyer J (2001) Phylogeny and origin of 82 zygomycetes from all 54 genera of the Mucorales and Mortierellales based on combined analysis of actin and translation elongation factor EF-1alpha genes. Gene 270:113–120

    Article  CAS  PubMed  Google Scholar 

  • Voigt K, Cigelnik E, O’donnell K (1999) Phylogeny and PCR identification of clinically important Zygomycetes based on nuclear ribosomal-DNA sequence data. J Clin Microbiol 37:3957–3964

    CAS  PubMed  PubMed Central  Google Scholar 

  • von Höhnel F (1914) Fragmente zur Mykologie XVI (XVI. Mitteilung, Nr. 813 bis 875). Sitzungsberichte der Kaiserlichen Akademie der Wissenschaften Math.-naturw. Klasse Abt. I. 123:49–155

    Google Scholar 

  • von Höhnel F (1917a) Fungi imperfecti. Beiträge zur Kenntnis derselben. Hedwigia. 59:236–284

    Google Scholar 

  • von Höhnel F (1917b) Über die Benennung Stellung und Nebenfruchtformen von Sphaerella Fries. Ber. dt. Bot. Ges. 35:627–631

    Google Scholar 

  • von Höhnel F (1919) Fragmente zur Mykologie. XXIII Mitteilung, Nr. 1154 bis 1188. Sitzungsberichte der Kaiserlichen Akademie der Wissenschaften Math.-naturw. Klasse Abt. I. 128:535–625

    Google Scholar 

  • Walther G, Pawlowska J, Alastruey-Izquierdo A, Wrzosek M, Rodriguez-Tudela JL, Dolatabadi S, Chakrabarti A, de Hoog GS (2013) DNA barcoding in Mucorales: an inventory of biodiversity. Persoonia 30:11–47

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wanasinghe DN, Jones EBG, Camporesi E, Boonmee S, Ariyawansa HA, Wijayawardene NN, Hyde KD (2014a) An exciting novel member of Lentitheciaceae in Italy from Clematis Vitalba. Cryptogam Mycol 35:323–337

    Article  Google Scholar 

  • Wanasinghe DN, Jones EBG, Camporesi E, Boonmee S, Karunarathna SC, Thines M, Mortimer PE, Xu JC, Hyde KD (2014b) Dematiopleospora mariae gen. sp. nov., from Ononis spinosa in Italy. Cryptogam Mycol 35:105–117

    Article  Google Scholar 

  • Wanasinghe DN, Jones EG, Camporesi E, Mortimer PE, Xu J, Bahkali AH, Hyde KD (2015) The genus Murispora. Cryptogam Mycol 36:419–448

    Article  Google Scholar 

  • Wanasinghe DN, Jones EBG, Camporesi E, Dissanayake AJ, Kamolhan S, Mortimer PE, Xu J, Abd-Elsalam KA, Hyde KD (2016) Taxonomy and phylogeny of Laburnicola gen. nov. and Paramassariosphaeria gen. nov. (Didymosphaeriaceae, Massarineae, Pleosporales). Fungal Biol 120:1354–1373

    Article  PubMed  Google Scholar 

  • Wanasinghe DN, Hyde KD, Jeewon R, Crous PW, Wijayawardene N, Jones EBG, Bhat DJ, Phillips AJL, Groenewald JZ, Dayarathne MC, Phukhamsakda C, Thambugala KM, Bulgakov TS, Camporesi E, Gafforov YS, Mortimer PE, Karunarathna SC (2017a) Phylogenetic revision of Camarosporium (Pleosporineae, Dothideomycetes) and allied genera. Stud Mycol 87:207–256

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wanasinghe DN, Phookamsak R, Jeewon R, Li WJ, Hyde KD, Jones EBG, Camporesi E, Promputtha I (2017b) A family level rDNA based phylogeny of Cucurbitariaceae and Fenestellaceae with descriptions of new Fenestella species and Neocucurbitaria gen. nov. Mycosphere 8:397–414

    Article  Google Scholar 

  • Wang HK, Aptroot A, Crous PW, Hyde KD, Jeewon R (2007a) The polyphyletic nature of Pleosporales: an example from Massariosphaeria based on rDNA and RBP2 gene phylogenies. Mycol Res 111:1268–1276

    Article  CAS  PubMed  Google Scholar 

  • Wang L, Zhang X-M, Zhuang W-Y (2007b) Penicillium macrosclerotiorum, a new species producing large sclerotia discovered in south China. Mycol Res 111:1242–1248

    Article  CAS  PubMed  Google Scholar 

  • Wang YN, Liu XY, Zheng RY (2014) Umbelopsis changbaiensis sp. nov. from China and the typification of Mortierella vinacea. Mycol Prog 13:657–669

    Article  Google Scholar 

  • Wang N, Lu BH, Yang LN, Wang X, Yang C, Liu LP, Zhang YJ, Gao J (2017) Fusarium avenaceum causing fruit rot on Rubus idaeus in Jilin Province, China. Plant Dis 101–1037

  • Wendt L, Sir EB, Kuhnert E, Heitkämper S, Lambert C, Hladki AI, Romero AI, Luangsa-ard JJ, Srikitikulchai P, Peršoh D, Stadler M (2017) Resurrection and emendation of the Hypoxylaceae, recognised from a multigene phylogeny of the Xylariales. Mycol Prog 1–40

  • White MM, James TY, O’Donnell K, Cafaro MJ, Tanabe Y, Sugiyama J (2006) Phylogeny of the Zygomycota based on nuclear ribosomal sequence data. Mycologia 98:872–884

    Article  PubMed  Google Scholar 

  • Wijayawardene NN, Mckenzie EHC, Hyde KD (2012) Towards incorporating anamorphic fungi in a natural classification-checklist and notes for 2011. Mycosphere 3:157–228

    Article  Google Scholar 

  • Wijayawardene NN, Song Y, Bhat DJ, McKenzie EH, Chukeatirote E, Wang Y, Hyde KD (2013) Wojnowicia viburni, sp. nov., from China and its phylogenetic placement. Sydowia 65:129–138

    Google Scholar 

  • Wijayawardene NN, Crous PW, Kirk PM, Hawksworth DL, Boonmee S, Braun U, Dai DQ, Dsouza MJ, Diederich P, Dissanayake A, Doilom M, Hongsanan S, Jones EBG, Groenewald JZ, Jayawardena R, Lawrey JD, Liu JK, Lücking R, Madrid H, Manamgoda DS, Muggia L, Nelsen MP, Phookamsak R, Suetrong S, Tanaka K, Thambugala KM, Wanasinghe DN, Wikee S, Zhang Y, Aptroot A, Ariyawansa HA, Bahkali AH, Bhat DJ, Gueidan C, Chomnunti P, De Hoog GS, Knudsen K, Li WJ, McKenzie EHC, Miller AN, Phillips AJL, Piatek M, Raja HA, Shivas RS, Slippers B, Taylor JE, Tian Q, Wang Y, Woudenberg JHC, Cai L, Jaklitsch WM, Hyde KD (2014a) Naming and outline of Dothideomycetes-2014 including proposals for the protection or suppression of generic names. Fungal Divers 69:1–55

    Article  PubMed  PubMed Central  Google Scholar 

  • Wijayawardene NN, Hyde KD, Bhat DJ, Camporesi E, Schumacher RK, Chethana KWT, Wikee S, Bahkali AH, Wang Y (2014b) Camarosporium-like species are polyphyletic in Pleosporales; introducing Paracamarosporium and Pseudocamarosporium gen. nov. in Montagnulaceae. Cryptogam Mycol 35:177–198

    Article  Google Scholar 

  • Wijayawardene NN, Hyde KD, Bhat DJ, Goonasekara ID, Nadeeshan D, Camporesi E, Schumacher RK, Wang Y (2015) Additions to Brown Spored Coelomycetous Taxa in Massarinae, Pleosporales: Introducing Phragmocamarosporium gen. nov. and Suttonomyces gen. nov. Cryptogam Mycol 36:213–224

    Article  Google Scholar 

  • Wijayawardene NN, Hyde KD, Wanasinghe DN, Papizadeh M, Goonasekara ID, Camporesi E, Bhat DJ, McKenzie EHC, Phillips AJL, Diederich P, Tanaka K, Li WJ, Tangthirasunun N, Phookamsak R, Dai DQ, Dissanayake AJ, Weerakoon G, Maharachchikumbura SSN, Hashimoto A, Matsumura M, Bahkali AH, Wang Y (2016) Taxonomy and phylogeny of dematiaceous coelomycetes. Fungal Divers 77:1–316

    Article  Google Scholar 

  • Wijayawardene NN, Hyde KD, Rajeshkumar KC, Hawksworth DL, Madrid H, Kirk PM, Braun U, Singh RV, Crous PW, Kukwa M, Lücking R, Kurtzman CP, Yurkov A, Haelewaters D, Aptroot A, Lumbsch HT, Timdal E, Ertz D, Etayo J, Phillips AJL, Groenewald JZ, Papizadeh M, Selbmann L, Dayarathne MC, Weerakoon G, Jones EBG, Suetrong S, Tian Q, Castañeda-Ruiz RF, Bahkali AH, Pang K-L, Tanaka K, Dai DQ, Sakayaroj J, Hujslová M, Lombard L, Shenoy BD, Suija A, Maharachchikumbura SSN, Thambugala KM, Wanasinghe DN, Sharma BO, Gaikwad S, Pandit G, Zucconi L, Onofri S, Egidi E, Raja HA, Kodsueb R, Cáceres MES, Pérez-Ortega S, Fiuza PO, Monteiro JS, Vasilyeva LN, Shivas RG, Prieto M, Wedin M, Olariaga I, Lateef AA, Agrawal Y, Fazeli SAS, Amoozegar MA, Zhao GZ, Pfliegler WP, Sharma G, Oset M, Abdel-Wahab MA, Takamatsu S, Bensch K, de Silva NI, De Kese A, Karunarathna A, Boonmee S, Pfister DH, Lu Y-Z, Luo Z-L, Boonyuen N, Daranagama DA, Senanayake IC, Jayasiri SC, Samarakoon MC, Zeng X-Y, Doilom M, Quijada L, Rampadarath S, Heredia G, Dissanayake AJ, Jayawardana RS, Perera RH, Tang LZ, Phukhamsakda C, Hernández-Restrepo M, Ma X, Tibpromma S, Gusmao LFP, Weerahewa D, Karunarathna SC (2017) Notes for genera-Ascomycota. Fungal Divers 86:1–594

    Article  Google Scholar 

  • Winter G (1885) Rabenhorst’s Kryptogamen-Flora. Pilze - Ascomyceten. 1:193–528

    Google Scholar 

  • Woudenberg JHC, Groenewald JZ, Binder M, Crous PW (2013) Alternaria redefined. Stud Mycol 75:171–212

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Woudenberg JHC, Seidl MF, Groenewald JZ, de Vries M, Stielow JB, Thomma BPHJ, Crous PW (2015) Alternaria section Alternaria: species formae speciales or pathotypes? Stud Mycol 82:1–21

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Xiang Y, Huang C-H, Hu Y, Wen J, Li S, Yi T, Chen H, Xiang J, Ma H (2016) Evolution of Rosaceae fruit types based on nuclear phylogeny in the context of geological times and genome duplication. Mol Biol Evol 34:262–281

    PubMed Central  Google Scholar 

  • Yan YC, Zhang ZX, Song YJ, Deng DF, Liu ZY (2015) First Report of Prunus serrulata Stem Canker Caused by Botryosphaeria dothidea in China. Plant Dis 100:858

    Article  Google Scholar 

  • Yang T, Chang W, Cao B, Tian CM, Zhao L, Liang YM (2015) Two new Phragmidium species identified on Rosa plants native to China. Phytotaxa 217:182–190

    Article  Google Scholar 

  • Yang T, Groenewald JZ, Cheewangkoon R, Jami F, Abdollahzadeh J, Lombard L, Crous PW (2017) Families, genera and species of Botryosphaeriales. Fungal Biol 121:322–346

    Article  PubMed  Google Scholar 

  • Yip HY (1986a) Umbelopsis fusiformis sp. nov. from a wet sclerophyll forest and a new combination for Mortierella ovata. Trans Br Mycol Soc 86:334–337

    Article  Google Scholar 

  • Yip HY (1986b) Two new species of Umbelopsis from soil in Australia. Trans Br Mycol Soc 87:243–248

    Article  Google Scholar 

  • Zhang Y, Schoch CL, Fournier J, Crous PW, De Gruyter J, Woudenberg JHC, Hirayama K, Tanaka K, Pointing SB, Spatafora JW, Hyde KD (2009a) Multi-locus phylogeny of the Pleosporales: a taxonomic, ecological and evolutionary re-evaluation. Stud Mycol 64:85–102

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Zhang Y, Wang HK, Fournier J, Crous PW, Jeewon R, Pointing SB, Hyde KD (2009b) Towards a phylogenetic clarification of Lophiostoma/Massarina and morphologically similar genera in the Pleosporales. Fungal Divers 38:225–251

    Google Scholar 

  • Zhang Y, Crous PW, Schoch CL, Hyde KD (2012) Pleosporales. Fungal Divers 53:1–221

    Article  CAS  PubMed  Google Scholar 

  • Zhao X, Zhang LL, Zhao ZT, Wang WC, Leavitt SD, Lumbsch HT (2015) A molecular phylogeny of the lichen genus Lecidella focusing on species from mainland China. PLoS ONE 10:e0139405

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Zhaxybayeva O, Gogarten JP (2002) Bootstrap, Bayesian probability and maximum likelihood mapping: exploring new tools for comparative genome analyses. BMC genomics 3:4

    Article  PubMed  PubMed Central  Google Scholar 

Download references

Acknowledgements

The authors extend their appreciation to the International Scientific Partnership Program ISPP at King Saud University for funding this research work through ISPP#0089. We thank the technical staff of Center of Excellence in Fungal Research, Sornram Sukpisit and Wilawan Punyaboon for their invaluable assistance. Dhanushka Wanasinghe would like to thank the Molecular Biology Experimental Center at Kunming Institute of Botany for facilities for molecular work. We are also grateful to Anuruddha Karunarathna, Binu Samarakoon and Digvijayini Bundhun for their valuable assistance. Dhanushka Wanasinghe is also thankful to Hiran Ariyawansa for his valuable suggestions. Hyang Burm Lee was supported by the Graduate Program for the Undiscovered Taxa of Korea, and the Project on Survey and Discovery of Indigenous Fungal Species of Korea funded by NIBR, and the Project on Discovery of Fungi from Freshwater and Collection of Fungarium funded by NNIBR of the Ministry of Environment (MOE), and the Cooperative Research Program for Agriculture Science and Technology Development (PJ012957), Rural Development Administration, Republic of Korea. Chayanard Phukhamsakda would like to thank Royal Golden Jubilee Ph. D. Program under Thailand Research Fund, for the award of a scholarship no. PHD/0020/2557. Ausana Mapook is grateful to Research and Researchers for Industries (RRI) PHD57I0012. R. Jeewon is grateful to University of Mauritius & Mae Fah Luang University for enabling research collaboration. K.D. Hyde thanks to National Research Council of Thailand (Mae Fah Luang University) for grants ‘‘Biodiversity, phylogeny and role of fungal endophytes of Pandanaceae’’ (Grant No: 592010200112) and Thailand Research Fund (TRF) Grant No RSA5980068 entitled ‘‘Biodiversity, phylogeny and role of fungal endophytes on above parts of Rhizophora apiculata and Nypa fruticans’’. National Research Council of Thailand (Mae Fah Luang University) grant no 60201000201 entitled ‘‘Diseases of mangrove trees and maintenance of good forestry practice’’. K.D. Hyde is an Adjunct Professor at Chiang Mai University. Samantha C. Karunarathna thanks Yunnan Provincial Department of Human Resources and Social Security funded postdoctoral project (number 179122) and National Science Foundation of China (NSFC) project code 31750110478. Kevin D. Hyde also thanks to the Chinese Academy of Sciences, project number 2013T2S0030, for the award of Visiting Professorship for Senior International Scientists at Kunming Institute of Botany. Y.S. Gafforov acknowledges the support from Committee for coordination science and technology development under the Cabinet of Ministers of Uzbekistan (Project No. P3-2014-0830174425). Timur Bulgakov appreciates the Alexander Fateryga and T.I. Vyazemsky Karadag Scientific Station (Karadag State Reserve) for the help in expeditions in Crimean Peninsula. Jianchu Xu thanks Key Research Program of Frontier Sciences of the Chinese Academy of Sciences (Grant No. QYZDY-SSW-SMC014), Key Research Program of the Ministry of Sciences and Technology (Grant No. 2017YFC0505101), CGIAR Research Program 6: Forest, Trees and Agroforestry, the Kunming Institute of Botany, Chinese Academy of Science (CAS) and the Chinese Ministry of Science and Technology, under the 12th 5-year National Key Technology Support Program (NKTSP) 2013BAB07B06 integration and comprehensive demonstration of key technologies on Green Phosphate-mountain construction. Peter E. Mortimer thanks the National Science Foundation of China (NSFC) Project Codes 41761144055 and 41771063. S. Tibell would like to acknowledge support from the grant ‘dha 2016-26 4.3’ from ‘The Swedish Taxonomy Initiative’.

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Authors and Affiliations

  1. Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming, 650201, Yunnan, People’s Republic of China

    Dhanushka N. Wanasinghe, Kevin D. Hyde, Saowaluck Tibpromma, Danushka S. Tennakoon, Anusha H. Ekanayake, Ishani D. Goonasekara, Ausana Mapook, Wen-Jing Li, Junfu Li, Mingkwan Doilom, Jianchu Xu, Peter E. Mortimer & Samantha C. Karunarathna

  2. Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand

    Dhanushka N. Wanasinghe, Chayanard Phukhamsakda, Kevin D. Hyde, Saowaluck Tibpromma, Danushka S. Tennakoon, Asha J. Dissanayake, Subashini C. Jayasiri, Anusha H. Ekanayake, Rekhani Hansika Perera, Milan C. Samarakoon, Ishani D. Goonasekara, Ausana Mapook, Wen-Jing Li, Indunil C. Senanayake, Junfu Li, Chada Norphanphoun & Mingkwan Doilom

  3. World Agroforestry Centre, East and Central Asia, Kunming, 650201, Yunnan, People’s Republic of China

    Dhanushka N. Wanasinghe, Kevin D. Hyde, Saowaluck Tibpromma, Danushka S. Tennakoon, Anusha H. Ekanayake, Ishani D. Goonasekara, Ausana Mapook, Wen-Jing Li, Junfu Li, Mingkwan Doilom, Jianchu Xu & Samantha C. Karunarathna

  4. Mushroom Research Foundation, 128 M.3 Ban Pa Deng T. Pa Pae, A. Mae Taeng, Chiang Mai, 50150, Thailand

    Dhanushka N. Wanasinghe, Chayanard Phukhamsakda, Kevin D. Hyde, Saowaluck Tibpromma, Danushka S. Tennakoon, Subashini C. Jayasiri, Anusha H. Ekanayake, Rekhani Hansika Perera, Milan C. Samarakoon, Ishani D. Goonasekara, Ausana Mapook, Wen-Jing Li, Indunil C. Senanayake, Junfu Li, Chada Norphanphoun & Mingkwan Doilom

  5. Department of Health Sciences, Faculty of Science, University of Mauritius, Reduit, Mauritius

    Rajesh Jeewon

  6. Environmental Microbiology Lab, Division of Food Technology, Biotechnology & Agrochemistry, College of Agriculture and Life Sciences, Chonnam National University, Yongbong-Dong 300, Buk-Gu, Gwangju, 61186, Korea

    Hyang Burm Lee

  7. Nantgaredig, 33 B St. Edwards Road Southsea Hants, Hampshire, PO5 3DH, UK

    E. B. Gareth Jones

  8. Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, People’s Republic of China

    Asha J. Dissanayake

  9. Laboratory of Mycology, Institute of Botany, Academy of Sciences of the Republic of Uzbekistan, 32 Durmon Yuli Street, Tashkent, Uzbekistan, 100125

    Yusufjon Gafforov

  10. A.M.B. Gruppo, Micologico Forlivese ‘‘Antonio Cicognani’’, Via Roma 18, Forlì, Italy

    Erio Camporesi

  11. A.M.B, Circolo Micologico ‘‘Giovanni Carini’’, C.P. 314, Brescia, Italy

    Erio Camporesi

  12. Società per gli Studi Naturalistici della Romagna, C.P. 144, Bagnacavallo, RA, Italy

    Erio Camporesi

  13. Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi, Krasnodar Region, Russia, 354002

    Timur S. Bulgakov

  14. Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, 50200, Thailand

    Milan C. Samarakoon

  15. Engineering Research Center of Southwest Bio-Pharmaceutical Resources, Ministry of Education, Guizhou University, Guiyang, 550025, Guizhou, People’s Republic of China

    Chada Norphanphoun

  16. Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box: 2455, Riyadh, 1145, Saudi Arabia

    Ali H Bahkali

  17. Department of Plant Medicine, National Chiayi University, 300 Syuefu Road, Chiayi City, 60004, Taiwan

    Danushka S. Tennakoon

  18. Department of Ecology, University of Kassel, Heinrich-Plett-Strasse, 40, 34132, Kassel, Germany

    Yusufjon Gafforov

  19. Department of Organismal Biology, Uppsala University, Norbyvägen 18D, 752 36, Uppsala, Sweden

    Leif Tibell & Sanja Tibell

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  1. Dhanushka N. Wanasinghe
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  2. Chayanard Phukhamsakda
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  3. Kevin D. Hyde
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  7. Saowaluck Tibpromma
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  8. Danushka S. Tennakoon
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  9. Asha J. Dissanayake
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  10. Subashini C. Jayasiri
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  13. Timur S. Bulgakov
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  14. Anusha H. Ekanayake
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Corresponding author

Correspondence to Samantha C. Karunarathna.

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Wanasinghe, D.N., Phukhamsakda, C., Hyde, K.D. et al. Fungal diversity notes 709–839: taxonomic and phylogenetic contributions to fungal taxa with an emphasis on fungi on Rosaceae. Fungal Diversity 89, 1–236 (2018). https://doi.org/10.1007/s13225-018-0395-7

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  • DOI: https://doi.org/10.1007/s13225-018-0395-7

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