Abstract
This paper is a compilation of notes on 110 fungal taxa, including one new family, 10 new genera, and 76 new species, representing a wide taxonomic and geographic range. The new family, Paradictyoarthriniaceae is introduced based on its distinct lineage in Dothideomycetes and its unique morphology. The family is sister to Biatriosporaceae and Roussoellaceae. The new genera are Allophaeosphaeria (Phaeosphaeriaceae), Amphibambusa (Amphisphaeriaceae), Brunneomycosphaerella (Capnodiales genera incertae cedis), Chaetocapnodium (Capnodiaceae), Flammeascoma (Anteagloniaceae), Multiseptospora (Pleosporales genera incertae cedis), Neogaeumannomyces (Magnaporthaceae), Palmiascoma (Bambusicolaceae), Paralecia (Squamarinaceae) and Sarimanas (Melanommataceae). The newly described species are the Ascomycota Aliquandostipite manochii, Allophaeosphaeria dactylidis, A. muriformia, Alternaria cesenica, Amphibambusa bambusicola, Amphisphaeria sorbi, Annulohypoxylon thailandicum, Atrotorquata spartii, Brunneomycosphaerella laburni, Byssosphaeria musae, Camarosporium aborescentis, C. aureum, C. frutexensis, Chaetocapnodium siamensis, Chaetothyrium agathis, Colletotrichum sedi, Conicomyces pseudotransvaalensis, Cytospora berberidis, C. sibiraeae, Diaporthe thunbergiicola, Diatrype palmicola, Dictyosporium aquaticum, D. meiosporum, D. thailandicum, Didymella cirsii, Dinemasporium nelloi, Flammeascoma bambusae, Kalmusia italica, K. spartii, Keissleriella sparticola, Lauriomyces synnematicus, Leptosphaeria ebuli, Lophiostoma pseudodictyosporium, L. ravennicum, Lophiotrema eburnoides, Montagnula graminicola, Multiseptospora thailandica, Myrothecium macrosporum, Natantispora unipolaris, Neogaeumannomyces bambusicola, Neosetophoma clematidis, N. italica, Oxydothis atypica, Palmiascoma gregariascomum, Paraconiothyrium nelloi, P. thysanolaenae, Paradictyoarthrinium tectonicola, Paralecia pratorum, Paraphaeosphaeria spartii, Pestalotiopsis digitalis, P. dracontomelon, P. italiana, Phaeoisaria pseudoclematidis, Phragmocapnias philippinensis, Pseudocamarosporium cotinae, Pseudocercospora tamarindi, Pseudotrichia rubriostiolata, P. thailandica, Psiloglonium multiseptatum, Saagaromyces mangrovei, Sarimanas pseudofluviatile, S. shirakamiense, Tothia spartii, Trichomerium siamensis, Wojnowicia dactylidicola, W. dactylidis and W. lonicerae. The Basidiomycota Agaricus flavicentrus, A. hanthanaensis, A. parvibicolor, A. sodalis, Cantharellus luteostipitatus, Lactarius atrobrunneus, L. politus, Phylloporia dependens and Russula cortinarioides are also introduced. Epitypifications or reference specimens are designated for Hapalocystis berkeleyi, Meliola tamarindi, Pallidocercospora acaciigena, Phaeosphaeria musae, Plenodomus agnitus, Psiloglonium colihuae, P. sasicola and Zasmidium musae while notes and/or new sequence data are provided for Annulohypoxylon leptascum, A. nitens, A. stygium, Biscogniauxia marginata, Fasciatispora nypae, Hypoxylon fendleri, H. monticulosum, Leptosphaeria doliolum, Microsphaeropsis olivacea, Neomicrothyrium, Paraleptosphaeria nitschkei, Phoma medicaginis and Saccotheciaceae. A full description of each species is provided with light micrographs (or drawings). Molecular data is provided for 90 taxa and used to generate phylogenetic trees to establish a natural classification for species.
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References
Acero FJ, González V, Sánchez-Ballesteros J, Rubio V, Checa J, Bills GF, Salazar O, Platas G, Peláez F (2004) Molecular phylogenetic studies on the Diatrypaceae based on rDNA-ITS sequences. Mycologia 96:249–259
Adamčík S, Buyck B (2014) Type studies in Russula subsection Nigricantes from the Eastern United Morphs. Cryptog Mycolog 35(3):291–307
Adams GC, Surve-Iyer RS, Iezzoni AF (2002) Ribosomal DNA sequence divergence and group I introns within the Leucostoma species L. cinctum, L. persoonii, and L. parapersoonii sp. nov., ascomycetes that cause Cytospora canker of fruit trees. Mycologia 94:947–967
Adams GC, Wingfield MJ, Common R, Roux J (2005) Phylogenetic relationships and morphology of Cytospora species and related teleomorphs (Ascomycota, Diaporthales, Valsaceae) from Eucalyptus. Stud Mycol 52:1–144
Adams GC, Roux J, Wingfield MJ (2006) Cytospora species (Ascomycota, Diaporthales, Valsaceae): introduced and native pathogens of trees in South Africa. Australas Plant Pathol 35:521–548
Alves A, Correia A, Luque J, Phillips AJL (2004) Botryosphaeria corticola, sp. nov. on Quercus species, with notes and description of Botryosphaeria stevensii and its anamorph, Diplodia mutila. Mycologia 96:598–613
Alves A, Correia A, Phillips AJL (2006) Multi-gene genealogies and morphological data support Diplodia cupressi sp. nov., previously recognized as D. pinea f. sp. cupressi, as a distinct species. Fungal Divers 23:1–15
Amano N (1983) Saprobic loculoascomycetous fungi from Japan. I. Hysteriaceous fungi. Trans Mycol Soc Jpn 24:283–297
Andersen HL, Ekman S (2005) Disintegration of the Micareaceae (lichenized Ascomycota):a molecular phylogeny based on mitochondrial rDNA sequences. Mycol Res 109:21–30
Aptroot A (1991) A monograph of the Pyrenulaceae (excluding Anthracothecium and Pyrenula) and the Requienellaceae, with notes on the Pleomassariaceae, the Trypetheliaceae and Mycomicrothelia (lichenized and non–lichenized Ascomycetes). Bibl Lichenologica 44:1–178
Aptroot A (1995) A monograph of Didymosphaeria. Stud Mycol 37:1–160
Ariyawansa HA, Hawksworth DL, Hyde KD, Jones EBG, Maharachchikumbura SSN, Manamgoda DS, Thambugala KM, Udayanga D, Camporesi E, Daranagama A, Jayawardena R, Liu JK, McKenzie EHC, Phookamsak R, Senanayake IC, Shivas RG, Tian Q, Xu JC (2014a) Epitypification and neotypification: guidelines with appropriate and inappropriate examples. Fungal Divers 69(1):57–91
Ariyawansa HA, Tanaka K, Thambugala KM, Phookamsak R, Tian Q, Camporesi E, Hongsanan S, Monkai J, Wanasinghe DN, Mapook A, Chukeatirote E, Kang JC, Xu JC, McKenzie EHC, Jones EBG, Hyde KD (2014b) A molecular phylogenetic reappraisal of the Didymosphaeriaceae (= Montagnulaceae). Fungal Divers 68:69–104
Arnold AE, Lutzoni F (2007) Diversity and host range of foliar fungal endophytes: are tropical leaves biodiversity hotspots? Ecology 88:541–549
Arzanlou M, Groenewald JZ, Fullerton RA, Abeln ECA, Carlier J, Zapater M-F, Buddenhagen IW, Viljoen A, Crous PW (2008) Multiple gene genealogies and phenotypic characters differentiate several novel species of Mycosphaerella and related anamorphs on banana. Persoonia 20:19–37
Aveskamp MM, de Gruyter J, Crous PW (2008) Biology and recent developments in the systematics of Phoma, a complex genus of major quarantine significance. Fungal Divers 31:1–18
Aveskamp MM, de Gruyter J, Woudenberg JHC, Verkley GJM, Crous PW (2010) Highlights of the Didymellaceae: a polyphasic approach to characterise Phoma and related pleosporalean genera. Stud Mycol 65:1–60
Barr ME (1968) The Venturiaceae in North America. Can J Bot 46:799–864
Barr ME (1975) Pestalosphaeria, a new genus in the Amphisphaeriaceae. Mycologia 67:187–194
Barr ME (1978) The Diaporthales in North America with emphasis on Gnomonia and its segregates. Mycol Mem 7:1–232
Barr ME (1979) A classification of Loculoascomycetes. Mycologia 71:935–957
Barr ME (1982) On the Pleomassariaceae (Pleosporales) in North America. Mycotaxon 15:349–383
Barr ME (1984) Herpotrichia and its segregates. Mycotaxon 20:1–38
Barr ME (1989) The Venturiaceae in North America: revisions and additions. Sydowia 41:25–40
Barr ME (1990) Prodromus to nonlichenized, pyrenomycetous members of class Hymenoascomycetes. Mycotaxon 39:43–184
Barr ME (1993) Notes on the Pleomassariaceae. Mycotaxon 49:129–142
Barr ME (1987) Prodomus to class loculoascomycetes. University of Massachusetts, Amherst
Bas C (1991) A short introduction to the ecology, taxonomy and nomenclature of the genus Agaricus. In: Van Grievsen LJLD (ed) Genetics and breeding of Agaricus. Proceedings of the First International Seminar on Mushroom Science. Pudoe Wageningen pp 21–24
Batista AC, Ciferri R (1962) The chaetothyriales. Sydowia 3:1–129
Batista AC, Ciferri R (1963) The sooty-molds of the family Asbolisiaceae. Quad Ist Bot Univ Lab Crittogam Pavia 31:1–229
Bendiksby M, Timdal E (2013) Molecular phylogenetics and taxonomy of Hypocenomyce sensu lato (Ascomycota: Lecanoromycetes): extreme polyphyly and morphological / ecological convergence. Taxon 62:940–956
Berbee ML, Taylor JW (1992) Detecting morphological convergence in true fungi, using 18S rRNA gene sequence data. BioSystems 28:117–125
Bills GF (1984) Southern Appalachian russulas. II. Mycotaxon 21:491–517
Boehm EWA (2009) The family Hysteriaceae Chevall. (1826) Hysteriales Lindau (1897). http://www.eboehm.com/hysteriaceae.html
Boehm EWA, Mugambi G, Miller AN, Huhndorf S, Marincowitz S, Schoch CL, Spatafora JW (2009a) A molecular phylogenetic reappraisal of the Hysteriaceae, Mytilinidiaceae and Gloniaceae (Pleosporomycetidae, Dothideomycetes) with keys to world species. Stud Mycol 64:49–83
Boehm EWA, Schoch CL, Spatafora JW (2009b) On the evolution of the Hysteriaceae and Mytilinidiaceae (Pleosporomycetidae, Dothideomycetes, Ascomycota) using four nuclear genes. Mycol Res 113:461–479
Bonorden HF (1864) Abhandlungen aus dem Gebiete der Mykologie. Abh Naturforsch Ges Halle 8:1–168
Budziszewska J, Szypula W, Wilk M, Wrzosek M (2011) Paraconiothyrium babiogorense sp. nov., a new endophyte from fir club moss Huperzia selago (L.) Bernh. ex Schrank & Mart. (Huperziaceae). Mycotaxon 115:457–468
Buyck B (2012) Observations on some enigmatic Cantharellus (Cantharellales, Basidiomycota) with lilac-violaceous tints from Africa and Madagascar. Cryptog Mycolog 33(2):167–179
Buyck B (2014) Exploring the diversity of mooth chanterelles (Cantharellus, Cantharellales). Cryptog Mycolog 35:23–40
Buyck B, Adamčík S (2013) Type studies in Russula subsection Lactarioideae from North America and a tentative key to North American species. Cryptog Mycolog 34:259–279
Buyck B, Halling R (2004) Two new Quercus associated Russula’s from Costa Rica and their relation to some very rare North American species. Cryptog Mycolog 25(1):3–13
Buyck B, Randrianjohany E (2013) Cantharellus eyssartieri sp.nov. (Cantharellales, Basidiomycota) from monospecific Uapaca ferruginea stands near Ranomafana (eastern escarpment, Madagascar). Cryptogam Mycol 34(4):29–34
Buyck B, Halling R, Mueller G (2005) The inventory of Russula in Costa Rica :discovery of two very rare North American species in montane oak forest. Boll Assoc Mycol Bresadola (Nuova Ser) 46:57–74
Buyck B, Hofstetter V, Eberhardt U, Verbeken A, Kauff F (2008) Walking the thin line between Russula and Lactarius: the dilemma of Russula subsect. Ochricompactae. Fungal Divers 28:15–40
Buyck B, Hofsetter V, Verbeken A, Walleyn R (2010) Proposal 1919: to conserve Lactarius nom. Cons. (Basidiomycota) with a conserved type. Taxon 59:295–296
Buyck B, Kauff F, Eyssartier G, Couloux A, Hofstetter V (2014) A multilocus phylogeny for worldwide Cantharellus (Cantharellales, Agaricomycetidae). Fungal Divers 64(1):101–121
Buyck B, Kauff F, Eyssartier G, Couloux A, Hofstetter V (2015a) A multigene world phylogeny for Cantharellus. Fungal Divers 64:101–121
Buyck B, Kauff F, Randrianjohany E, Hofstetter V (2015b) Sequence data reveal a high diversity of Cantharellus associated with endemic vegetation in Madagascar. Fungal Divers 70:189–208
Cai L, Zhang K, McKenzie EHC, Hyde KD (2003a) New species of Dictyosporium and Digitodesmium from submerged wood in Yunnan, China. Sydowia 55:129–135
Cai L, Zhang K, McKenzie EHC, Lumyong S, Hyde KD (2003b) New species of Canalisporium and Dictyosporium from China and a note on the differences between these genera. Mycologie 24:3–11
Cai L, Hyde KD, Taylor PWJ, Weir BS, Waller J, Abang MM, Zhang JZ, Yang YL, Phoulivong S, Liu ZY, Prihastuti H, Shivas RG, McKenzie EHC, Johnston PR (2009) A polyphasic approach for studying Colletotrichum. Fungal Divers 39:183–204
Calatayud V, Sanz MJ, Aptroot A (2001) Lichenopyrenis galligena (Pleomassariaceae), a new genus of gall-forming lichenicolous fungi on Leptochidium. Mycol Res 105(5):634–637
Callan BE, Rogers JD (1986) Cultural characters and anamorphs of Biscogniauxia (= Nummularia) marginata, B. dennisii, and B. repanda. Can J Bot 64:842–847
Cannon PF (1994) The newly recognized family Magnaporthaceae and its interrelationships. Syst Ascomycetum 13:25–42
Cannon PF, Damm U, Johnston PR, Weir BS (2012) Colletotrichum current status and future directions. Stud Mycol 73:181–213
Cappelli A (1984) Agaricus L.: Fr. 558 pp. incl. color plates. Libreria editrice Biella Giovanna, I - 21047, Saronno, Italy
Castañeda Ruíz RF, Velazquez S, Cano J, Saikawa M, Guarro J (2002) Phaeoisaria aguilerae anam. sp. nov. from submerged wood in Cuba with notes and reflections on the genus Phaeoisaria. Cryptogam Mycol 23(1):9–18
Castlebury LA, Rossman AY, Jaklitsch WJ, Vasilyeva LN (2002) A preliminary overview of the Diaporthales based on large subunit nuclear ribosomal DNA sequences. Mycologia 94:1017–1031
Cesati V, de Notaris G (1863) Schema di classificazione deglesferiacei italici aschigeri piu’o meno appartenenti al genere Sphaeria nell’antico significato attribuitoglide Persono. Comm Soc Crittog Ital 1:177–420
Chacon S, Dörge D, Weisenborn J, Piepenbring M (2013) A new species and a new record of Diatrypaceae from Panama. Mycologia 105:681–688
Chen J, Zhao RL, Karunarathna SC, Callac P, Raspé O, Bahkali AH, Hyde KD (2012) Agaricus megalosporus: a new species in section Minores. Cryptogam Mycol 33(2):145–155
Chesters CGC, Bell A (1970) Studies in the Lophiostomataceae Sacc. Mycol Pap 120:1–55
Chomnunti P, Schoch CL, Aguirre-Hudson B, Ko Ko TW, Hongsanan S, Jones EBG, Kodserb R, Chukeatirote E, Bahkali AH, Hyde KD (2011) Capnodiaceae. Fungal Divers 51(1):103–134
Chomnunti P, Bhat DJ, Jones EBG, Chukeatirote E, Bahkali AH, Hyde KD (2012a) Trichomeriaceae, a new sooty mould family of Chaetothyriales. Fungal Divers 56:63–76
Chomnunti P, KoKo TW, Chukeatirote E, Cai L, Jones EBG, Kodsueb R, Chen H, Hassan BA, Hyde KD (2012b) Phylogeny of Chaetothyriaceae in northern Thailand including three new species. Mycologia 104:382–395
Chomnunti P, Hongsanan S, Aguirre-Hudson B, Tian Q, Peršoh D, Dhami MK, Alias AS, Xu J, Liu X, Stadler M, Hyde KD (2014) The sooty moulds. Fungal Divers 66:1–36
Ciferri (1958) Man Mic Med, edn 2 (Pavia) 1:178
Corda ACI (1831) Die Pilze Deutschlands. In: Sturm J (ed) Deutschlands Flora in Abbildungen nach der Natur mit Beschreibungen. Sturm, Nürnberg 12(3):33–64
Corda ACI (1836) Mykologische Beobachtungen. In: Weitenweber, Beitrage zur gesammten Natur- und Heilwissenschaften (Prague)
Crous PW, Braun U (2003) Mycosphaerella and its anamorphs: 1. Names published in Cercospora and Passalora. CBS biodiversity series no 1. Centraalbureau voor Schimmelcultures, Utrecht
Crous PW, Gams W, Stalpers JA, Robert V, Stegehuis G (2004) MycoBank: an online initiative to launch mycology into the 21st century. Stud Mycol 50:19–22
Crous PW, Slippers B, Wingfield MJ, Rheeder J, Marasas WFO, Philips AJL, Alves A, Burgess TI, Barber PA, Groenewald JZ (2006) Phylogenetic lineages in the Botryosphaeriaceae. Stud Mycol 55:235–253
Crous PW, Braun U, Groenewald JZ (2007) Mycosphaerella is polyphyletic. Stud Mycol 58:1–3
Crous PW, Braun U, Wingfield MJ, Wood AR, Shin HD, Summerell BA, Alfenas AC, Cumagun CJR, Groenewald JZ (2009a) Phylogeny and taxonomy of obscure genera of microfungi. Persoonia 22:139–161
Crous PW, Schoch CL, Hyde KD, Wood AR, Gueidan C, de Hoog GS, Groenewald JZ (2009b) Phylogenetic lineages in the Capnodiales. Stud Mycol 64:17–47
Crous PW, Verkley GJM, Christensen M, Castañeda-Ruiz RF, Groenewald JZ (2012) How important are conidial appendages? Persoonia 28:126–137
Crous PW, Braun U, Hunter GC, Wingfield MJ, Verkley GJM, Shin HD, Nakashima C, Groenewald JZ (2013) Phylogenetic lineages in Pseudocercospora. Stud Mycol 75:37–114
Dai YC (2010) Hymenochaetaceae (Basidiomycota) in China. Fungal Divers 45:131–343
Dai YC (2012) Polypore diversity in China with an annotated checklist of Chinese polypores. Mycoscience 53:49–80
Dai DQ, Bhat DJ, Liu JK, Chukeatirote E, Zhao R, Hyde KD (2012) Bambusicola, a new genus from bamboo with asexual and sexual morphs. Mycologie 33(3):363–379
Dai DQ, Bahkali AH, Bhat DJ, Xiao YP, Chukeatirote E, Zhao RL, Mckenzie EHC, Xu JC, Hyde KD (2014a) Towards a natural classification of Dothideomycetes 3: the genera Muellerites, Trematosphaeriopsis, Vizellopsis and Yoshinagella (Dothideomycetes incertae sedis). Phytotaxa 176(1):18–27
Dai DQ, Wijayawardene NN, Bhat DJ, Chukeatirote E, Bahkali AH, Zhao RL, Hyde KD (2014b) Pustulomyces gen. nov. Accommodated in Diaporthaceae, Diaporthales, as revealed by morphology and molecular analyses. Cryptogam Mycol 35(1):63–72
Damm U, Verkley GJM, Crous PW, Fourie PH, Haegi A, Riccioni L (2008) Novel Paraconiothyrium species on stone fruit trees and other woody hosts. Persoonia 20:9–17
Damm U, Woudenberg JHC, Cannon PF, Crous PW (2009) Colletotrichum species with curved conidia from herbaceous hosts. Fungal Divers 39:45–87
de Gruyter JD, Aveskamp MM, Woudenberg JHC, Verkley GJM, Groenewald JZ, Crous PW (2009) Molecular phylogeny of Phoma and allied anamorph genera: towards a reclassification of the Phoma complex. Mycol Res 113:508–519
de-Gruyter J, Woudenberg JH, Aveskamp MM, Verkley GJ, Groenewald JZ, Crous PW (2010) Systematic reappraisal of species in Phoma section Paraphoma, Pyrenochaeta and Pleurophoma. Mycologia 102:1066–1081
de Gruyter JD, Woudenberg JHC, Aveskamp AA, Verkley GJM, Groenewald JZ, Crous PW (2012) Redisposition of Phoma-like anamorphs in Pleosporales. Stud Mycol 75:1–36
de-Gruyter J, Woudenberg JHC, Aveskamp MM, Verkley GJM, Groenewald JZ, Crous PW (2013) Redisposition of Phoma-like anamorphs in Pleosporales. Stud Mycol 75:1–36
Doweld AB (2012) (2068–2070) Proposals to conserve Pertusariaceae against Variolariaceae, Chrysothrichaceae against Pulverariaceae, and Dothioraceae against Saccotheciaceae (Fungi) with revision of dates of publication given in Taxonomic Literature II. Taxon 61(3):681–682
Ellis MB (1963) Dematiaceous hyphomycetes. V Mycol Pap 93:1–33
Ellis MB (1971) Dematiaceous hyphomycetes. Commonwealth Mycological Institute, Kew
Ellis MB (1976) More dematiaceous hyphomycetes. Commonwealth Mycological Institute, Kew, 507
Ellwood SR, Kamphuis LG, Oliver RP (2006) Identification of Sources of Resistance toPhoma medicaginis isolates in medicago truncatula SARDI core collection accessions, and multigene differentiation of isolates. Phytopathology 96:1330–1336
Eriksson OE (2006) Outline of ascomycota. Myconet 12:1–88
Eriksson OE, Hawksworth DL (1986) Outline of the ascomycetes-1986. Syst Ascomycet 5:185–324
Eriksson OE, Hawksworth DL (1991) Outline of the Ascomycetes–1990. Syst Ascomyc Reprint of Volumes 1–4 (1982–1985) 9:39–271
Eyssartier G, Buyck B (1999, for 1998) Contribution à la systématique du genre Cantharellus en Afrique tropicale: étude de quelques espèces rouges. Belg J Bot 131:139–149
Fan XL, Liang YM, Ma R, Tian CM (2014) Morphological and phylogenetic studies of Cytospora (Valsaceae, Diaporthales) isolates from Chinese scholar tree, with description of a new species. Mycoscience 55:252–259
Farr DF, Bills GF (1995) Wojnowicia colluvium sp. nov. isolated from conifer litter. Mycologia 87:518–524
Farr DF, Bills GF, Chamuris GP, Rossman AY (1995) Fungi on plants and plant products in the United States. APS Press, St Paul
Fries EM (1823) Systema mycologicum vol 2. Greifswald, Germany (in Latin)
Fröhlich J, Hyde KD (1999) Biodiversity of palm fungi in the tropics: are global fungal diversity estimates realistic? Biodivers Conserv 8:977–1004
Fröhlich J, Hyde KD, Petrini O (2000) Endophytic fungi associated with palms. Mycol Res 104:1202–1212
Fu CH, Hsieh HM, Chen CY, Chang TT, Huang YM, Ju YM (2013) Ophiodiaporthe cyatheae gen. sp. nov., a diaporthalean pathogen causing a devastating wilt disease of Cyathea lepifera in Taiwan. Mycologia 105(4):861–872
Geiser DM, Gueidan C, Miadlikowska J, Lutzoni F, Kauff F, Hofstetter V, Fraker E, Schoch CL, Tibell L, Untereiner WA, Aptroot A (2006) Eurotiomycetes:Eurotiomycetidae and chaetothyriomycetidae. Mycologia 98(6):1053–1064
Glawe DA (1985) Hapalocystis berkeleyi and Macrodiplodiopsis desmazieresii in artificial culture. Mycologia 77:880–886
Glawe DA, Rogers JD (1984) Diatrypaceae in the Pacific Northwest. Mycotaxon 20:401–460
Goh TK, Hyde KD, Ho WH, Yanna (1999) A revision of the genus Dictyosporium, with descriptions of three new species. Fungal Diver 2:65–100
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O (2010) New algorithms and methods to estimate maximum-likelihood phylogenies:assessing the performance of phyml 3.0. Syst Biol 59:307–321
Hafellner J (1984) Studien in Richtung einer natürlicheren Gliederung der Sammelfamilien Lecanoraceae und Lecideaceae. In: Hertel H, Oberwinkler F (eds) Festschrift J. Poelt Beih. Nova Hedwigia 79:241–371
Hall T (2004) BioEdit v. 7.0.1. Department of Microbiology, North Carolina State University. Available at www.mbio.ncsu.edu/BioEdit/bioedit.html
Hansford GC (1946) The foliicolous Ascomycetes, their parasites and associated fungi. Mycol Pap 15:1–240
Hashimoto A, Sato G,Matsuda T,MatsumuraM, Hatakeyama S, Harada Y, Ikeda H, Tanaka K. (2015) Taxonomic revision of Pseudolachnea and Pseudolachnella and establishment of Neopseudolachnella and Pseudodinemasporium gen. nov. Mycologia 107:383–408
Hawksworth DL (1991) The fungal dimension of biodiversity: magnitude, significance, and conservation. Mycol Res 95(6):641–655
Hawksworth DL (2001) The magnitude of fungal diversity: the 1–5 million species estimate revisited. Mycol Res 105:1422–1433
Hawksworth DL, Rossman AY (1997) Where are all the undescribed fungi? Phytopathology 87(9):888–891
Hawksworth DL, Kirk PM, Sutton BC, Pegler DN (1995) Ainsworth & Bisby’s dictionary of the fungi, 8th edn. CAB International, Wallingford
Hertel H, Rambold G (1988) Cephalodiate Arten der Gattung Lecidea sensu lato (Ascomycetes lichenisati). Plant Syst Evol 158:289–312
Hibbett DS, Binder M, Bischoff JF, Blackwell M, Cannon PF, Hibbetta S, Erikssone OE, Huhndorf S, James T, Kirk PM, Lucking R, Lumbschf HT, Lutzoni F, Matheny PB, Mclaughlin DJ, Powell MJ, Redhead S, Schochk CL, Spatafora JW, Stalpers JA, Vilgalys R, Aime MC, Aptroot A, Bauer R, Begerow D, Benny GL, Castlebury LA, Crous PW, Dair YC, Gamsl W, Geiser DM, Griffith GW, Gueidang CC, Hawksworth DL, Hestmark G, Hosaka K, Humber RA, Hyde KD, Ironsidet JE, Ljalgz UK, Kurtzmanaa CP, Larssonab KH, Lichtwardtac R, Longcoread J, Miadlikowskag J, Millerae A, Moncalvo JM, Standridge SM, Oberwinkler F, Parmasto E, Reeb V, Rogers JD, Roux C, Ryvarden L, Sampaio JP, Schußler A, Sugiyama J, Thorn RG, Tibell L, Untereiner WA, Walker C, Wang Z, Weir A, Weiss M, White MM, Winka K, Yao YJ, Zhang N (2007) A higher-level phylogenetic classification of the Fungi. Mycol Res 111:509–547
Hirata K, Kusaba M, Chuma I, Osue J, Nakayashiki H, Mayama S, Tosa Y (2007) Speciation in Pyricularia inferred from multilocus phylogenetic analysis. Mycol Res 111(7):799–808
Hirayama K, Tanaka K (2011) Taxonomic revision of Lophiostoma and Lophiotrema based on reevaluation of morphological characters and molecular analyses. Mycoscience 52:401–412
Hirayama K, Tanaka K, Raja HA, Miller AN, Shearer CA (2010) A molecular phylogenetic assessment of Massarina ingoldiana sensu lato. Mycologia 102(3):729–746
Höhnel F (1919) Fragmente zur Mykologie. XXIII Mitteilung, Nr. 1154 bis 1188. Sitzungsberichte der Kaiserlichen Akademie der Wissenschaften Math.-naturw. Klasse Abt. I. 128:535–625
Holm L, Holm K (1988) Studies in the Lophiostomataceae, with emphasis on the Swedish species. Acta Univ Uppsaliensis Symbolae Botanicae Uppsaliensis 28:1–50
Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754–755
Hughes SJ (1958) Revisiones Hyphomycetum aliquot cum appendice de nominibus rejiciendis. Can J Bot 36(6):727–836
Hughes SJ (1972) New Zealand Fungi 17. Pleomorphism in Cuantennariaceae and Metacapnodiaceae, two new families of sooty moulds. N Z J Bot 10:225–242
Huhndorf SM, Greif M, Mugambi GK, Miller AN (2008) Two new genera in the Magnaporthaceae, a new addition to Ceratosphaeria and two new species of Lentomitella. Mycologia 100(6):940–955
Hyde KD (1995) The genus Massarina, with a description of M.eburnea and an annotated list of Massarina names. Mycol Res 99:291–296
Hyde KD, Alias SA (2000) Biodiversity and distribution of fungi associated with decomposing Nypa fruticans. Biodivers Conserv 9:393–402
Hyde KD, Mckenzie EHC, Dalisay TU (2001) Saprobic fungi on bamboo culms. Fungal Divers 7:35–48
Hyde KD, Cai L, McKenzie EHC, Yang YL, Zhang JZ, Prihastuti H (2009) Colletotrichum: a catalogue of confusion. Fungal Divers 39:1–17
Hyde KD, Jones EBG, Liu JK, Ariyawansa H, Boehm E, Boonmee S, Braun U, Chomnunti P, Crous PW, Dai DQ, Diederich P, Dissanayake A, Doilom M, Doveri F, Hongsanan S, Jayawardena R, Lawrey JD, Li YM, Liu YX, Lücking R, Monkai J, Muggia L, Nelsen MP, Pang KL, Phookamsak R, Senanayake I, Shearer CA, Suetrong S, Tanaka K, Thambugala KM, Wijayawardene NN, Wikee S, Wu HX, Zhang Y, Aguirre-Hudson B, Alias SA, Aptroot A, Bahkali AH, Bezerra JL, Bhat DJ, Camporesi E, Chukeatirote E, Gueidan C, Hawksworth DL, Hirayama K, Hoog SD, Kang JC, Knudsen K, Li WJ, Li XH, Liu ZY, Mapook A, McKenzie EHC, Miller AN, Mortimer PE, Phillips AJL, Raja HA, Scheuer C, Schumm F, Taylor JE, Tian Q, Tibpromma S, Wanasinghe DN, Wang Y, Xu JC, Yan JY, Yacharoen S, Zhang M (2013) Families of Dothideomycetes. Fungal Divers 63:1–313
Hyde KD, Nilsson RH, Alias SA, Ariyawansa HA, Blair JE, Cai L, de Cock AWAM, Dissanayake AJ, Glockling SL, Goonasekara ID, Gorczak M, Hahn M, Jayawardena RS, van Kan JAL, Laurence MH, Lévesque CA, Li XH, Liu JK, Maharachchikumbura SSN, Manamgoda DS, Martin FN, McKenzie EHC, McTaggart AR, Mortimer PE, Nair PVR, Pawłowska J, Rintoul TL, Shivas RG, Spies CFJ, Summerell BA, Taylor PWJ, Terhem RB, Udayanga D, Vaghefi N, Walther G, Wilk M, Wrzosek M, Xu JC, Yan JY, Zhou N (2014) One stop shop:backbones trees for important pytopathogenic genera:I. Fungal Divers 67:21–125
Illingworth CA, Andrews JH, Bibeau C, Sogin ML (1991) Phylogenetic placement of Athelia bombacina, Aureobasidium pullulans and Colletotrichum gloeosporioides inferred from sequence compansons of small subunit ribosomal RNAs. Exp Mycol 15:65–75
Illman WM, White GP (1984) A new Morrisographium-like species with appendaged conidia assigned to the genus Conicomyces. Can J Bot 63:419–422
Inderbitzin P, Landvik S, Abdel-Wahab MA, Barbee ML (2001) Aliquandostipitaceae, a new family for two tropical ascomycetes with unusually wide hyphae and dimorphic ascomata. Am J Bot 88:52–61
Index Fungorum (2015) http://www.indexfungorum.org/Names/Names.asp. Accessed Dec 2014
Jaklitsch WM, Voglmayr H (2004) Hapalocystis occidentalis-a new species of Diaporthales from North America and a key to the species of Hapalocystis. Stud Mycol 50:229–234
Jones EBG, Sakayaroj J, Suetrong S, Somrithipol S, Pang KL (2009) Classification of marine Ascomycota, anamorphic taxa and Basidiomycota. Fungal Divers 35:1–203
Ju YM, Rogers JD (1996) A revision of the genus Hypoxylon. Mycol Mem 20:1–365
Ju YM, Rogers JD, Hsieh HM (2004) New Hypoxylon species and notes on some names associated with or related to Hypoxylon. Mycologia 96:154–161
Justavino DR, Kirschner R, Piepenbring M (2014) New species and new records of Meliolaceae from Panama. Fungal Divers 70(1):73–84
Kaiser WJ, Viruega JR, Peever TL, Trapero A (2008) First report of ascochyta blight outbreak of pea caused by Ascochytapisi in Spain. Plant Dis 92:1365
Kang JC, Kong RYC, Hyde KD (1998) Studies on the Amphisphaeriales I. Amphisphaeriaceae (sensu stricto) and its phylogenetic relationships inferred from 5.8 S rDNA and ITS2 sequences. Fungal Divers 1:147–157
Kang JC, Hyde KD, Kong RYC (1999a) Studies on Amphisphaeriales: The Cainiaceae. Mycol Res 103(12):1621–1627
Kang JC, Hyde KD, Kong RYC (1999b) Studies on the Amphisphaeriales. The genera excluded from the Amphisphaeriaceae, Cainiaceae and Clypeosphaeriaceae. Fungal Divers 2:135–151
Katoh K, Misawa K, Kuma K, Miyata T (2002) MAFFT:a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 30(14):3059–3066
Kerrigan RW, Callac P, Guinberteau J, Challen MP, Parra LA (2006) Agaricus section Xanthodermatei: a phylogenetic reconstruction with commentary on taxa. Mycologia 97:1292–1315
Khan SN, Misra BM, Rehill PS (1988) Two new species of Cercospora. Indian J For 11(3):188–190
Kirk PM, Cannon PF, David JC, Stalpers JA (2001) Ainsworth & Bisby’s dictionary of the fungi, 9th edn. CABI, Wallingford
Kirk PM, Cannon PF, Minter DW, Stalpers JA (2008) Ainsworth & Bisby’s dictionary of the fungi, 10th edn. CABI, Wallingford
Kirschner R, Pang KL, Jones EBG (2013) Two cheirosporous hyphomycetes reassessed based on morphological and molecular examination. Mycol Prog 12:29–36
Kodsueb R, Dhanasekaran V, Aptroot A, Lumyong S, McKenzie EHC, Hyde KD, Jeewon R (2006) The family Pleosporaceae:intergeneric relationships and phylogenetic perspectives based on sequence analyses of partial 28S rDNA. Mycologia 98:571–583
Kohlmeyer J (1984) Tropical marine fungi. PSZNI Mar Ecol 5:329–378
Kohlmeyer J, Volkmann-Kohlmeyer B (1993) Atrotorquata and Loratospora: new ascomycete genera on Juncus roemerianus. Syst Ascomycetum 12(1–2):7–22
Kruys A, Eriksson OE, Wedin M (2006) Phylogenetic relationships of coprophilous Pleosporales (Dothideomycetes, Ascomycota), and the classification of some bitunicate taxa of unknown position. Mycol Res 110:527–536
Lamprecht SC, Crous PW, Groenewald JZ, Tewoldemedhin YT, Marasas WF (2011) Diaporthaceae associated with root and crown rot of maize. IMA Fungus 2(1):13
Lawreya JD, Diederich P (2003) Lichenicolous fungi:interactions, evolution, and biodiversity. Bryologist 106(1):80–120
Lebel T, Syme A (2012) Sequestrate species of Agaricus and Macrolepiota from Australia: new species and combinations and their position in a calibrated phylogeny. Mycologia 104(2):496–520
Léveillé JH (1846) Description des champignons de I’Herbier du Museum de Paris. Ann Sci Nat Sér 5(3):249–304
Liew EC, Aptroot A, Hyde KD (2000) Phylogenetic significance of the pseudoparaphyses in loculoascomycetes taxonomy. Mol Phylogenet Evol 16:392–402
Lindau G (1896) Hysteriineae. In: Engler, Prantl (eds) Naturliche Pflanzenfamilien. I. Teil, I. Abteilung 1:265–278
Liu JK, Phookamsak R, Jones EBG, Zhang Y, Ko-Ko TW, Hu HL, Boonmee S, Doilom M, Chukeatirote E, Bahkali AH, Wang Y, Hyde KD (2011) Astrosphaeriella is polyphyletic, with species in Fissuroma gen. nov., and Neoastrosphaeriella gen. nov. Fungal Divers 51:135–154
Liu JK, Phookamsak R, Doilom M, Wikee S, Li YM, Ariyawansha H, Boonmee S, Chomnunti P, Dai DQ, Bhat JD, Romero AI, Zhuang WY, Monkai J, Jones EBG, Chukeatirote E, KoKo TW, Zhao YC, Wang Y, Hyde KD (2012) Towards a natural classification of Botryosphaeriales. Fungal Divers 57:149–210
Liu JK, Phookamsak R, Dai DQ, Tanaka K, Jones EBG, Xu JC, Chukeatirote E, Hyde KD (2014) Roussoellaceae, a new pleosporalean family to accommodate the genera Neoroussoellagen. nov., Roussoella and Roussoellopsis. Phytotaxa 181(1):001–033
Locquin ML (1984) Mycologie Générale et Structurale. Masson, Paris
Lohman ML (1931) A study of Glonium parvulumin culture. Pap Mich Acad Sci Arts Lett 13:141–156
Lohman ML (1933a) Hysteriaceae: life histories of certain species. Pap Mich Acad Sci Arts Lett 17:229–288
Lohman ML (1933b) Septonema toruloideum: a stage of Mytilidion scolecosporum. Mycologia 25:34–43
Lohman ML (1934) A cultural and taxonomic study of Hysterium hyalinum. Pap Mich Acad Sci Arts Lett 19:133–140
Lorenzo LE, Messuti MI (1998) Noteworthy Hysteriaceae from southern South America. Mycol Res 102(9):1101–1107
Lumbsch HT, Huhndorf SM (2010) Myconet volume 14. Part one. Outline of ascomycota 2009. Part two. Notes on Ascomycete systematics. Nos. 4751–5113. Fieldiana Life Earth Sci 1:1–64
Luo J, Zhang N (2013) Magnaporthiopsis, a new genus in Magnaporthaceae (Ascomycota). Mycologia 105(4):1019–1029
Maharachchikumbura SSN, Guo LD, Chukeatirote E, Bahkali AH, Hyde KD (2011) Pestalotiopsis–morphology, phylogeny, biochemistry and diversity. Fungal Divers 50:167–187
Maharachchikumbura SSN, Guo LD, Cai L, Chukeatirote E, Wu WP, Sun X, Crous PW, Bhat DJ, McKenzie EHC, Bahkali AH, Hyde KD (2012) A multi-locus backbone tree for Pestalotiopsis, with a polyphasic characterization of 14 new species. Fungal Divers 56:95–129
Maharachchikumbura SS, Guo LD, Chukeatirote E, McKenzie EHC, Hyde KD (2013) A destructive new disease of Syzygium samarangense in Thailand caused by the new species Pestalotiopsis samarangensis. Trop Plant Pathol 38:227–235
Maharachchikumbura SSN, Hyde KD, Groenewald JZ, Xu J, Crous PW (2014) Pestalotiopsis revisited. Stud Mycol 79:121–186
Matsushima T (1996) Matsushima mycological memoirs 9. Matsushima Mycol Memoirs 9:1–30
McNeill J, Turland NJ, Monro AM, Lepschi BJ (2012) XVIII International Botanical Congress: preliminary mail vote and report of Congress action on nomenclature proposals. Taxon 60:1507–1520
Mel’nik VA (2012) Phaeoisaria vietnamensis sp. nov. and P. clematidis (hyphomycetes) from Vietnam. Mycosphere 3(6):957–960
Miadlikowska J, Kauff F, Hofstetter V, Fraker E, Grube M, Hafellner J, Reeb V, Hodkinson B, Kukwa M, Lucking R, Hestmark G, Otalora M, Rauhut A, Budel B, Scheidegger C, Timdal E, Stenroos S, Brodo I, Perlmutter G, Ertz D, Diederich P, Lendemer J, May P, Schoch C, Arnold A, Gueidan C, Tripp E, Yahr R, Robertson C, Lutzoni F (2006) New insights into classification and evolution of the Lecanoromycetes (Pezizomycotina, Ascomycota) from phylogenetic analyses of three ribosomal RNA and two protein-coding genes. Mycologia 98:1088–1103
Miadlikowska J, Kauff F, Hognabba F, Oliver J, Molnar K, Fraker E, Gaya E, Hafellner J, Hofstetter V, Gueidan C, Otalora M, Hodkinson B, Kukwa M, Lucking R, Bjork C, Sipman H, Burgaz A, Thell A, Passo A, Myllys L, Goward T, Fernandez-Brime S, Hestmark G, Lendemer J, Lumbsch H, Schmull M, Schoch C, Serusiaux E, Maddison D, Arnold A, Lutzoni F, Stenroos S (2014) A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families. Mol Phylogenet Evol 79:132–168
Mugambi GK, Huhndorf SM (2009) Molecular phylogenetics of Pleosporales: Melanommataceae and Lophiostomataceae re-circumscribed (Plesporomycetidae, Dothideomycetes, Ascomycota). Stud Mycol 64:103–121
Müller E, von Arx JA (1950) Einige Aspeckte zur Systematik pseudospharialer Ascomyceten. Ber Schweizerischen. Bot Ges 60:329–397
Munk A (1953) The system of the pyrenomycetes. A contribution to a natural classification of the group Sphaeriales sensu Lindau. Dansk Bot Ark 15:1–163
Munk A (1957) Danish pyrenomycetes. A preliminary flora. Dansk Botanisk Arkiv Nag Raj TR (1993) Coelomycetous anamorphs with appendage-bearing conidia. Mycol Pap 17:1–491
Murata N, Aoki T, Kusaba M, Tosa Y, Chuma I (2014) Various species of Pyricularia constitute a robust clade distinct from Magnaporthe salvinii and its relatives in Magnaporthaceae. J Gen Plant Pathol 80(1):66–72
Nag Raj TR (1993) Coelomycetous anamorphs with appendage-bearing conidia. Mycol Pap, Waterloo
Niessl G (1872) Beiträge zur Kenntniss der Pilze. Beschreibung neuer und wenig bekannter Pilze. Verh Naturforschenden Vereines Brünn 10:153–217
Nimis PL, Poelt J (1987) The lichens and lichenicolous fungi of Sardinia (Italy), an annotated list. Stud Geobotanica 7(1):1–269
Nitschke T (1869) Grundzüge eines Systems der Pyrenomyceten. Verhandlungen des Naturalhistorischen Vereines der Preussischen Rheinlande und Westphalens 26(2):70–77
Pang KL, Vrijmoed LLP, Kong RYC, Jones EBG (2003) Lignincola and Nais, polyphyletic genera of the Halosphaeriales (Ascomycota). Mycol Prog 2:29–36
Parra LA (2008) Agaricus L. Allopsalliota Nauta & Bas. Part I Edizioni Candusso, Italy, Alassio
Parra LA (2013) Agaricus L. Allopsalliota, Nauta & Bas. Pars 2. Fungi Europaei 1A. Candusso Edizioni s.a.s. Alassio, Italy
Peck CH (1898) New species of Albama fungi. Bull Torrey Bot Club 25:368–372
Peck CH (1903) Report of the Morph botanist 1902. Bull New York Morph Mus Nat Hist 67:3–194
Peck CH (1906) Edible fungi. Bull New York Morph Mus Nat Hist 105:36–44
Peršoh D, Beck A, Rambold G (2004) The distribution of ascus types and photobiontal selection in Lecanoromycetes (Ascomycota) against the background of a revised SSU nrDNA phylogeny. Mycol Prog 3:103–121
Petrak F (1923) Mykologische Notizen. VI 202.Uber Sphaeria apiculata Curr. Ann Mycologici 21:182–335
Petrini LE, Müller E (1986) Haupt-und Nebenfruchtformen europäischer Hypoxylon-Arten (Xylariaceae, Sphaeriales) und verwandter Pilze. Mycol Helv 1:501–627
Phillips AJL, Alves A (2009) Taxonomy, phylogeny, and epitypification of Melanops tulasnei, the type species of Melanops. Fungal Divers 38:155–166
Phillips AJL, Alves A, Pennycook SR, Johnston PR, Ramaley A, Akulov A, Crous PW (2008) Resolving the phylogenetic and taxonomic status of dark-spored teleomorph genera in the Botryosphaeriaceae. Persoonia 21:29–55
Phillips AJL, Alves A, Abdollahzadeh J, Slippers B, Wingfield MJ, Groenewald JZ, Crous PW (2013) The Botryosphaeriaceae: genera and species known from culture. Stud Mycol 76(1):51–167
Phookamsak R, Liu JK, McKenzie EHC, Manamgoda DS, Ariyawansa HA, Thambugala KM, Dai DQ, Camporesi E, Chukeatirote E, Wijayawardene NN, Bahkali AH, Mortimer PE, Xu JC, Hyde KD (2014) Revision of Phaeosphaeriaceae. Fungal Divers 68:159–238
Pinho DB, Firmino AL, Ferreira-nior WG, Pereira OL (2012) An efficient protocol for DNA extraction from Meliolales and the description of Meliola centellaesp. nov. Mycotaxon 122(1):333–345
Prabhugaonkar A, Bhat DJ (2011) New record of Megacapitula villosa and Paradictyoarthrinium diffractum from India. Mycosphere 2(4):463–467
Preston NC (1948) Observations on the genus Myrothecium. II. Myrothecium gramineum Lib. and two other species. Trans Br Mycol Soc 26:158–168
Quaedvlieg W, Verkley GJM, Shin HD, Barreto RW, Alfenas AC, Swart WJ, Groenewald JZ, Crous PW (2013) Sizing up Septoria. Stud Mycol 75:307–339
Raja HA, Shearer CA (2007) Freshwater ascomycetes:Aliquandostipite minuta (Jahnulales, Dothideomycetes), a new species from florida. Mycoscience 48(6):395–398
Raja HA, Ferrer A, Shearer CA (2005) Aliquandostipite crystallinus, a new ascomycete species from wood submerged in freshwater habitats. Mycotaxon 91:207–215
Rambold G, Triebel D (1992) The Inter-lecanoralean Associations. Bibl Lichenologica 48:1–201
Rambold G, Davydov E, Elix JA, Nash III TH, Scheidegger, Ch, Zedda L (eds) (2001 onwards) [last visited:2014–11–20]. LIAS light—a database for rapid identification of lichens. http://liaslight.lias.net
Rappaz F (1987) Taxonomie et nomenclature des Diatrypacées à asques octosporées. Mycol Helv 2:285–648
Réblová M, Gams W, Seifert KA (2011) Monilochaetes and allied genera of the Glomerellales, and a reconsideration of families in the Microascales. Stud Mycol 68:163–191
Réblová M, Untereiner WA, Réblová K (2013) Novel Evolutionary Lineages Revealed in the Chaetothyriales (Fungi) Based on Multigene Phylogenetic Analyses and Comparison of ITS Secondary Structure. PLoS ONE 8(5):e63547
Rehm H (1912) Ascomycetes novi. Ann Mycol 10(4):389–397
Rivera-Orduña FN, Suarez-Sanchez RA, Flores-Bustamante ZR, Gracida-Rodriguez JN, Flores-Cotera LB (2011) Diversity of endophytic fungi of Taxus globosa (Mexican yew). Fungal Divers 47:65–74
Rossman AY, Farr DF, Castlebury LA (2007) A review of the phylogeny and biology of the Diaporthales. Mycoscience 48:135–144
Saccardo PA (1883) Sylloge Fungorum 2, Italy, Pavia, 815
Saccardo PA (1884) Sylloge Fungorum vol 3. Typis Seminarii, Italy (in Latin)
Saccardo PA (1892) Supplementum Universale, Pars II. Discomyceteae-Hyphomyceteae. Sylloge Fungorum 10:1–964
Saccardo PA (1913) Sylloge Fungorum XXII:185
SaccardoPA (1925–1928) Sylloge Fungorum XXIV:940
Schmit JP, Mueller GM (2007) An estimate of the lower limit of global fungal diversity. Biodivers Conserv 16:99–111
Schoch CL, Shoemaker RA, Seifert KA, Hambleton S, Spatafora JW, Crous PW (2006) A multigene phylogeny of the Dothideomycetes using four nuclear loci. Mycologia 98:1041–1052
Schoch CL, Crous PW, Groenewald JZ, Boehm EWA, Burgess TI, de Gruyter J, de Hoog GS, Dixon LJ, Grube M, Gueidan C, Harada Y, Hatakeyama S, Hirayama K, Hosoya T, Huhndorf SM, Hyde KD, Jones EBG, Kohlmeyer J, Kruys Å, Li YM, Lücking R, Lumbsch HT, Marvanová L, Mbatchou JS, McVay AH, Miller AN, Mugambi GK, Muggia L, Nelsen MP, Nelson P, Owensby CA, Phillips AJL, Phongpaichit S, Pointing SB, Pujade-Renaud V, Raja HA, Rivas Plata E, Robbertse B, Ruibal C, Sakayaroj J, Sano T, Selbmann L, Shearer CA, Shirouzu T, Slippers B, Suetrong S, Tanaka K, Volkmann-Kohlmeyer B, Wingfield MJ, Wood AR, Woudenberg JHC, Yonezawa H, Zhang Y, Spatafora JW (2009) A class–wide phylogenetic assessment of Dothideomycetes. Stud Mycol 64:1–15
Schulzer S (1870) Mykologische Beiträge. Verhandlungen der Zoologisch-Botanischen Gesellschaft Wien. 20:635–658
Seifert KA (1999) Conicomyces nassensis, a new synnematous fungus from the Nass River Valley, British Columbia. Mycotaxon 71:301–306
Seifert K, Jones MG, Gams W, Kendrick B (2011) The genera of hyphomycetes. CBS biodiversity series no. 9:1–997. CBS-KNAW Fungal Biodiversity Centre, Utrecht
Shao SC, Buyck B, Hofstetter V, Tian XF, Geng YH, Yu FQ, Liu PG (2014) Cantharellus hygrophorus, a new species in subgenus Afrocantharellus from tropical southwestern China. Cryptogam Mycol 35:281–289
Shearer CA, Crane JL (1980) Fungi of the Chesapeake Bay and its tributaries VIII. Ascomycetes with unfurling appendages. Bot Mar 23:607–615
Shearer CA, Crane JL, Chandra RKR (1990) Studies in Leptosphaeria. Lectotypification of Sphaeria doliolum. Mycologia 82:496–500
Shoemaker RA, Babcock CE (1989) Phaeosphaeria. Can J Bot 67:1500–1599
Sinclair RC, Eicker A, Jones MG (1983) Conicomyces, a unique synnematous hyphomycetes genus from South Africa. Mycologia 75:1100–1103
Singer R (1926) Monographie der Gattung Russula. Hedwigia 66:163–260
Singer R (1932) Monographie der Gattung Russula. Beih Botanischen Centralbl 49(2):205–380
Singer R (1939) Contribution a l’étude des Russules. 4. Quelques Russules américaines et asiatique (suite). Bull Soc Mycol France 55:233–283
Singer R (1943) Type studies on basidiomycetes II. Mycologia 35:142–163
Singer R (1951) The Agaricales (mushrooms) in modern taxonomy. Lilloa 22:5–832
Singer R (1986) The Agaricales in modern taxonomy, 4th edn. Koeltz Scientific Books, Königstein, 981
Sipman HJM, Aptroot A (2001) Where are the missing lichens? Mycol Res 105(12):1433–1439
Sitzungsberichte, Akademie K, Wissenschaften (1909) Wien Mathematisch-Naturwissenschaftliche Classe, Abt. 1. 118:329.
Sivanesan A (1984) The bitunicate ascomycetes and their anamorphs. J. Cramer, Vaduz, p 701
Sivanesan A, Hsieh WH (1990) A synnematous species of Janetia from Taiwan. Mycol Res 94:566–596
Somrithipol S (2007) A synnematous species of Dictyoarthrinium from Thailand. Mycologia 99:792–796
Somrithipol S, Jones EBG (2007) Lauriomyces cylindricus and Lauriomyces ellipticus spp. nov., two new hyphomycetes from tropical forest of Thailand. Nova Hedwigia 84:479–486
Spegazzini C (1910) Mycetes Argentinenses (Series V). Anales del Museo Nacional de Historia Natural, Buenos Aires. 20:329–467
Spielman LJ (1985) A monograph of Valsa on hardwoods in North America. Can J Bot 63:1355–1378
Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688–2690
Stamatakis A, Hoover P, Rougemont J (2008) A rapid bootstrap algorithmfor the RAxMLWeb Servers. Syst Biol 57:758–771
Suetrong S, Schoch CL, Spatafora JW, Kohlmeyer J, Volkmann-Kohlmeyer B, Sakayaroj J, Phongpaichit S, Tanaka K, Hirayama K, Jones EBG (2009) Molecular systematics of the marine Dothideomycetes. Stud Mycol 64:155–173
Suetrong S, Boonyuen N, Pang KL, Ueapattanakit J, Klaysuban A, Sri-indrasutdhi V, Sivichai S, Jones EBG (2011) A taxonomic revision and phylogenetic reconstruction of the Jahnulales (Dothideomycetes), and the new family Manglicolaceae. Fungal Divers 51:163–188
Sutton BC (1980) The Coelomycetes-Fungi imperfecti with pycnidia, acervuli and stromata. Commonwealth Mycological Institute, Kew, 496 pp
Suwannasai N, Rodtong S, Thienhirun S, Whalley AJS (2005) New species and phylogenetic relationships of Hypoxylon species found in Thailand inferred from the internal transcribed spacer regions of ribosomal DNA sequences. Mycotaxon 94:303–324
Swofford DL (2002) PAUP*. Phylogenetic analysis using parsimony (* and other methods). Version 4. Sinauer Associates, Sunderland
Sydow H, Sydow P (1912) Novae fungorum species. VII. Ann Mycologici 10:77–85
Tanaka K, Harada Y (2003a) Pleosporales in Japan (1): the genus Lophiostoma. Mycoscience 44:85–96
Tanaka K, Harada Y (2003b) Pleosporales in Japan (2): the genus Lophiotrema. Mycoscience 44:115–121
Tanaka K, Harada Y (2003c) Pleosporales in Japan (3): the genus Massarina. Mycoscience 44:173–185
Tanaka K, Harada Y (2005) Bambusicolous fungi in Japan (4): a new combination, Astrosphaeriella aggregata. Mycoscience 46(2):114–118
Tanaka K, Mel’nik VA, Kamiyama M, Hirayama K, Shirouzu T (2010) Molecular phylogeny of two coelomycetous fungal genera with stellate conidia, Prosthemium and Asterosporium on Fagales trees. Botany 88:1057–1071
Taylor JW, Jacobson DJ, Kroken S, Kasuga T, Geiser DM, Hibbett DS, Matthew CF (2000) Phylogenetic species recognition and species concepts in fungi. Fungal Genet Biol 31:21–32
Thambugala KM, Ariyawansa HA, Li YM, Boonmee S, Hongsanan S, Tian Q, Singtripop C, Bhat JD, Camporesi E, Jayawardena R, Liu ZY, Xu JC, Chukeatirote E, Hyde KD (2014) Dothideales. Fungal Divers 68(1):105–158
Theissen F, Sydow H (1917) Synoptische Tafeln. Annales Mycologici 15(6):389–491
Thongkantha S, Jeewon R, Vijaykrishna D, Lumyong S, McKenzie EHC, Hyde KD (2009) Molecular phylogeny of Magnaporthaceae (Sordariomycetes) with a new species, Ophioceras chiangdaoense from Dracaena loureiroi in Thailand. Fungal Divers 34:157–173
Triebel D, Bensch K (2005 onwards) [last visited: 2014–11–20]. LIAS names—a database with names of Lichens, lichenicolous fungi and non-lichenized ascomycetes. http://liasnames.lias.net
Trouillas FP, Sosnowski MR, Gubler WD (2010) Two new species of Diatrypaceae from coastal wattle in Coorong National Park, South Australia. Mycosphere 1:183–188
Trouillas FP, Pitt WM, Sosnowski MR, Huang R, Peduto F, Loschiavo A, Savocchia S, Scott ES, Gubler WD (2011) Taxonomy and DNA phylogeny of Diatrypaceae associated with Vitis vinifera and other woody plants in Australia. Fungal Divers 49:203–223
Tsui CKM, Berbee ML, Jeewon R, Hyde KD (2006) Molecular phylogeny of Dictyosporium and allied genera inferred from ribosomal DNA. Fungal Divers 21:157–166
Tulasne LR, Tulasne C (1861) Selecta fungorum carpologia, Xylariei, Valsei, Sphaeriei. The Imperial Press, Paris
Tulloch M (1972) The genus Myrothecium Tode ex Fr. Mycol Pap 130:1–42
Ueker FA (1988) A world list of Phomopsis names with notes on nomenclature, morphology and biology. Mycol Mem 13:1–231
Udayanga D, Liu XZ, McKenzie EHC, Chukeatirote E, Bahkali AHA, Hyde KD (2011) The genus Phomopsis: biology, applications, species concepts and names of common phytopathogenes. Fungal Divers 50:189–225
Udayanga D, Liu XZ, McKenzie EHC, Chukeatirote E, Hyde KD (2012) Multi-locus phylogeny reveals three new species of Diaporthe from Thailand. Cryptogam Mycol 33:295–309
Udayanga D, Castlebury LA, Rossman AY, Chukeatirote E, Hyde KD (2014) Diaporthe sojae species complex: redefining species associated with soybean and other herbaceous crops. Fungal Biol (in press)
Van Ryckegem G, Aptroot A (2001) A new Massarina and a new Wettsteinina (Ascomycota) from freshwater and tidal reeds. Nova Hedwigia 73:161–166
Vasilyeva LN, Stephenson SL (2005) Pyrenomycetes of the Great Smoky Mountains National Park. II. Diatrypella (Ces. et De Not.) Nitschke and Cryptovalsa Ces et De Not. (Diatrypaceae). Fungal Divers 19:189–200
Verkley GJM, da Silva M, Wicklow DT, Crous PW (2004) Paraconiothyrium, a new genus to accommodate the mycoparasite Coniothyrium minitans, anamorphs of Paraphaeosphaeria, and four new species. Stud Mycol 50:323–335
Verkley GJM, Dukik K, Renfurm R, Göker M, Stielow JB (2014) Novel genera and species of Coniothyrium-like fungi in Montagnulaceae (Ascomycota). Persoonia 32:25–51
von Höhnel F (1909) Fragmente zur Mykologie:VI. Mitteilung (Nr. 182 bis 288). Sitzungsberichte der Kaiserlichen Akademie der Wissenschaften Math.-naturw. Klasse Abt I 118:275–452
Von Höhnel F (1910) Fragmente zur Mykologie (Xi Mitteilung, Nr. 527 bis 573). Sitsungsber, Kaiserl. Akad Wiss Math-Naturwiss Cl Abt 1 119:618–679
Wagner T, Fischer M (2002) Proceedings towards a natural classification of the worldwide taxa Phellinus s.l. and Inonotus s.l., and phylogenetic relationships of allied genera. Mycologia 94:998–1016
Walker J (1972) Type studies on Gaeumannomyces graminis and related fungi. Trans Br Mycol Soc 58(3):427–457
Wang YZ, Aptroot A, Hyde KD (2004) Revision of the genus Amphisphaeria. Fungal Divers Res Ser 13:1–168
Wang H, Aproot A, Crous PW, Hyde KD, Jeewon R (2007) The polyphyletic nature of Pleosporales: an example of Massariosphaeria based on rDNA and RPB2 gene phylogenies. Mycol Res 111:1268–1276
Wedin M, Wiklund E, Jørgensen PM, Ekman S (2009) Slippery when wet: phylogeny and character evolution in the gelatinous cyanobacterial lichens (Peltigerales, Ascomycetes). Mol Phylogenet Evol 53:862–871
Wehmeyer LE (1933) The genus Diaporthe Nitschke and its segregates. University of Michigan Press, Ann Arbor
Wehmeyer LE (1941) A Revision of Melanconis, Pseudovalsa, Prosthecium and Titania. Univ Mich Stud Sci Ser 14:1–161
Whalley AJS, Edwards RL (1985) Nummulariella marginata: its conidial state, secondary metabolites and taxonomic relationships. Trans Br Mycol Soc 85:385–390
Whitton RS, McKenzie EHC, Hyde KD (2012) Fungi associated with Pandanaceae. Fungal Divers Res Ser 21
Wijayawardene NN, McKenzie EHC, Hyde KD (2012) Towards incorporating anamorphic fungi in a natural classification checklist and notes for 2011. Mycosphere 3:157–228
Wijayawardene NN, Camporesi E, Song Y, Dai DQ, Bhat DJ, Mckenzie EHC, Chukeatirote E, Mel’nik VA, Wang Y, Hyde KD (2013) Multigene analyses reveal taxonomic placement of Scolicosporium minkeviciusii in Phaeosphaeriaceae (Pleosporales). Cryptog Mycolog 34(4):357–366
Wijayawardene NN, Crous PW, Kirk PM, Hawksworth DL et al (2014) Naming and outline of Dothideomycetes–2014. Fungal Divers 69(1):1–55
Winter G (1887) Pilze, Ascomyceten. In: Rabenhorst’s Kryptogamen-Flora von Deutschland, Oesterreich und der Schweiz [i–vi] 1(2):1–928
Wisitrassameewong K, Nuytinck J, Hyde KD, Verbeken A (2014) Lactarius subgenus Russularia in South-East Asia:1. Species with very distant gills. Phytotaxa 158(1):23–42
Wong PTW, Dong C, Stirling AM, Dickinson ML (2012) Two new Magnaporthe species pathogenic to warm-season turfgrassses in Australia. Australas Plant Pathol 41(3):321–329
Woudenberg JH, Groenewald JZ, Binder M, Crous PW (2013) Alternaria redefined. Stud Mycol 75:171–212
Wu HX, Schoch CL, Boonmee S, Bahkali AH, Chomnunti P, Hyde KD (2011) Areappraisal of Microthyriaceae. Fungal Divers 51:189–248
Xu J, Ebada SS, Proksch P (2010) Pestalotiopsis a highly creative genus: chemistry and bioactivity of secondary metabolites. Fungal Divers 44:15–31
Xu J, Luo X, Zhong W, Zhang J, Tan R (2014) Characterization of volatile constituents from an endophytic Aspergillus fumigatus strain. J Chem Pharm Res 6(4):893–897
Yamazaki M, Morita Y, Arie T (2014) First report of myrothecium rhizome spot of ginger (Zingiber officinale) caused by Myrothecium verrucaria in Japan. Jpn J Physiol 80:11–15
Yuan ZQ, Zhao ZY (1994) Studies on Lophiostomataceous fungi from Xinjiang, China. Sydowia 46:162–184
Zhang N, Castlebury LA, Miller AN, Huhndorf SM, Schoch CL et al (2006) An overview of the systematics of the Sordariomycetes based on four-gene phylogeny. Mycologia 98:1076–1087
Zhang Y, Fournier J, Crous PW, Pointing SB, Hyde KD (2009a) Phylogenetic and morphological assessment of two new species of Amniculicola and their allies (Pleosporales). Persoonia 23:48–54
Zhang Y, Schoch CL, Fournier J, Crous PW, de Gruyter J, Woudenberg JHC, Hirayama K, Tanaka K, Pointing SB, Spatafora JW (2009b) Multi-locus phylogeny of Pleosporales: a taxonomic, ecological and evolutionary re-evaluation. Stud Mycol 64:85–102
Zhang Y, Wang HK, Fournier J, Crous PW, Jeewon R, Pointing SB, Hyde KD (2009c) Towards a phylogenetic clarification of Lophiostoma, Massarina and morphologically similar genera in the Pleosporales. Fungal Divers 38:225–251
Zhang Y, Crous PW, Schoch CL, Bahkali AH, Guo LD, Hyde KD (2011) A molecular, morphological and ecological re-appraisal of Venturiales: a new order of Dothideomycetes. Fungal Divers 51:249–277
Zhang Y, Crous PW, Schoch CL, Hyde KD (2012a) Pleosporales. Fungal Divers 53:1–221
Zhang Y, Fournier J, Phookamsak R, Bakhali AH, Hyde KD (2012b) Halotthiaceae fam. nov. (Ploepsorales ) accommodates the new genus Phaeoseptum and several other aquatic genera. Mycologia 40:107–110
Zhang Y, Zhang J, Wang Z, Fournier J, Crous PW, Zhang X, Li W, Ariyawansa HA, Hyde KD (2014) Neotypification and phylogeny of Kalmusia. Phytotaxa 176(1):64–173
Zhao RL, Karunarathna SC, Raspé O, Parra LA, Guinberteau J, Moinard M, De-Kesel A, Barroso G, Courtecuisse R, Hyde KD (2011) Major clades in tropical Agaricus. Fungal Divers 51:279–296
Zhao RL, Desjardin DE, Callac P, Parra LA, Guinberteau J, Soytong K, Karunarathna S, Zhang Y, Hyde KD (2012) Two species of Agaricus sect. Xanthodermatei from Thailand. Mycotaxon 122:187–195
Zhou LW (2013) Phylloporia tiliae sp. nov. from China. Mycotaxon 124:361–365
Zhou LW, Dai YC (2012) Phylogeny and taxonomy of Phylloporia (Hymenochaetales) with the description of five new species and a key to worldwide species. Mycologia 104:211–222
Acknowledgments
The research was supported by 1) Chinese Academy of Sciences (Project No. KSCX2–EW-Z-9). K. Tanaka would like to thank the Japan Society for the Promotion of Science (JSPS, 25440199) for financial support. This project was supported by the Distinguished Scientist Fellowship Program (DSFP), King Saud University, Saudi Arabia. This project was also supported by NSTIP strategic technologies program, number (12–BIO2840–02) in the Kingdom of Saudi Arabia. B. Buyck and V. Hofstetter acknowledge the ATM “Emergences” (Dirs. P. Janvier & S. Peigné) from the National museum of natural history, Paris, for financial support related to sequencing as well as travel expenses in Madagascar. Overseas travel of B. Buyck was funded by the ATM research program “Etat et structure phylogénétique de la biodiversité actuelle et fossile” of the Paris’ Museum. (director Ph. Janvier); S. Adamčík acknowledges funding by his national Slovak Project VEGA 02/0075/14. B.D. Shenoy acknowledges funding to visit Mae Fah Luang University, Chiang Rai under Indo-Thailand bilateral programme (THAI-1205). The Lewis family is warmly thanked for their generous hospitality, offering excellent and very agreeable working and field condition. K. Wisitrassameewong and A. Verbeken were financially supported by the joint doctorate program of the “Bijzonder Onderzoeksfonds Gent University” (BOF), Gent University. This research was also financial supported by The Biodiversity and Training Program (BRT R 149009) and Interaction Laboratory (BMIT), National Center for Genetic Engineering and Biotechnology (BIOTEC) Khlong Luang, Pathum Thani 12120, Thailand. Thanks are extended to the Thailand Research Fund grant (BRG 5580009) under the research grant entitled “Taxonomy, Phylogeny and Biochemistry of Thai Basidiomycetes” for financial support. J. Chen and R. L. Zhao would like to thank the National Natural Science Foundation of China (Project ID: 31000013, 31360014 and 31470152). Uwe Braun, Walter Jaklitsch, Tom May, Marc Stadler and Jo Taylor, are thanks for commenting on some parts of the manuscript. Shaun Pennycook is thanked for checking and suggesting corrections to most of the Latin names.
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Liu, J.K., Hyde, K.D., Jones, E.B.G. et al. Fungal diversity notes 1–110: taxonomic and phylogenetic contributions to fungal species. Fungal Diversity 72, 1–197 (2015). https://doi.org/10.1007/s13225-015-0324-y
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DOI: https://doi.org/10.1007/s13225-015-0324-y