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Naming and outline of Dothideomycetes–2014 including proposals for the protection or suppression of generic names

Abstract

Article 59.1, of the International Code of Nomenclature for Algae, Fungi, and Plants (ICN; Melbourne Code), which addresses the nomenclature of pleomorphic fungi, became effective from 30 July 2011. Since that date, each fungal species can have one nomenclaturally correct name in a particular classification. All other previously used names for this species will be considered as synonyms. The older generic epithet takes priority over the younger name. Any widely used younger names proposed for use, must comply with Art. 57.2 and their usage should be approved by the Nomenclature Committee for Fungi (NCF). In this paper, we list all genera currently accepted by us in Dothideomycetes (belonging to 23 orders and 110 families), including pleomorphic and non-pleomorphic genera. In the case of pleomorphic genera, we follow the rulings of the current ICN and propose single generic names for future usage. The taxonomic placements of 1261 genera are listed as an outline. Protected names and suppressed names for 34 pleomorphic genera are listed separately. Notes and justifications are provided for possible proposed names after the list of genera. Notes are also provided on recent advances in our understanding of asexual and sexual morph linkages in Dothideomycetes. A phylogenetic tree based on four gene analyses supported 23 orders and 75 families, while 35 families still lack molecular data.

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References

  1. Adler A, Yaniv I, Samra Z, Yacobovich J, Fisher S, Avrahami G, Levy I (2006) Exserohilum: an emerging human pathogen. Eur J Clin Microbiol Infect Dis 25(4):247–253

    CAS  PubMed  Google Scholar 

  2. Alcorn JL, Irwin JAG (1987) Acrocalymma medicaginis gen. et sp. nov. causing root and crown rot of Medicago sativa in Australia. Trans Br Mycol Soc 88:63–167

    Google Scholar 

  3. Alves JL, Woudenberg JHC, Duarte LL, Crous PW, Barreto RW (2013) Reappraisal of the genus Alternariaster (Dothideomycetes). Persoonia 31:77–85

    CAS  PubMed Central  PubMed  Google Scholar 

  4. Aptroot A (1995) Redisposition of some species excluded from Didymosphaeria (Ascomycotina). Nova Hedwigia 60(3–4):325–379

    Google Scholar 

  5. Ariyawansa HA, Camporesi E, Thambugala KM, Mapook A, Kang JC, Alias SA, Chukeatirote E, Thines M, Mckenzie EHC, Hyde KD (2014a) Confusion surrounding Didymosphaeria — phylogenetic and morphological evidence suggest Didymosphaeriaceae is not a distinct family. Phytotaxa 176(1):102–119

    Google Scholar 

  6. Ariyawansa HA, Kang JC, Alias SA, Chukeatirote E, Hyde KD (2014b) Pyrenophora. Mycosphere 5(2):351–362

    Google Scholar 

  7. Ariyawansa HA, Tanaka K, Thambugala KM, Phookamsak R, Tian Q, Camporesi E, Hongsanan S, Monkai J, Wanasinghe DN, Chukeatirote E, Kang JC, Xu JC, McKenzie EHC, Jones EBG, Hyde KD (2014c) A molecular phylogenetic reappraisal of the Didymosphaeriaceae (=Montagnulaceae). Fungal Diver 68:69–104

  8. Ariyawansa HA, Thambugala KM, Kang JC, Alias SA, Chukeatirote E, Hyde KD (2014d) Towards a natural classification of Dothideomycetes 2: The genera Cucurbidothis, Heterosphaeriopsis, Hyalosphaera, Navicella and Pleiostomellina (Dothideomycetes incertae sedis). Phytotaxa 176(1):7–17

    Google Scholar 

  9. Ariyawansaa HA, Kang JC, Alias SA, Chukeatirote E, Hyde KD (2013) Towards a natural classification of Dothideomycetes: The genera Dermatodothella, Dothideopsella, Grandigallia, Hysteropeltella and Gloeodiscus (Dothideomycetes incertae sedis). Phytotaxa 147(2):35–47

    Google Scholar 

  10. Aveskamp MM, De Gruyter J, Woudenberg JHC, Verkley GJ, Crous PW (2010) Highlights of the Didymellaceae: A polyphasic approach to characterize Phoma and related pleosporalean genera. Stud Mycol 65:1–60

    CAS  PubMed Central  PubMed  Google Scholar 

  11. Barr ME (1968) The Venturiaceae in North America. Can J Bot 46(6):799–864

    Google Scholar 

  12. Barr ME (1996) Planistromellaceae, a new family in the Dothideales. Mycotaxon 60:433–442

    Google Scholar 

  13. Batista AC, Bezerra JL, Barros TT (1969) Publ. Inst. Micol. Recife 637:5

  14. Batzer JC, Arias MM, Harrington TC, Gleason ML, Groenewald JZ, Crous PW (2008) Four species of Zygophiala (Schizothyriaceae, Capnodiales) are associated with the sooty blotch and flyspeck complex on apple. Mycologia 100(2):246–258

    CAS  PubMed  Google Scholar 

  15. Bensch K, Braun U, Groenewald JZ, Crous PW (2012) The genus Cladosporium. Stud Mycol 72:1–401

    CAS  PubMed Central  PubMed  Google Scholar 

  16. Berkeley MJ (1857) Introduction to cryptogamic botany. Bailliere, London, 604pp

    Google Scholar 

  17. Bills GF, Collado J, Ruibal C, Peláez F, Platas G (2004) Hormonema carpetanum sp. nov., a new lineage of dothideaceous black yeasts from Spain. Stud Mycol 50:149–157

    Google Scholar 

  18. Boehm EWA, Mugambi GK, Miller AN, Huhndorf SM, Marincowitz S, Spatafora JW, Schoch CL (2009) A molecular phylogenetic reappraisal of the Hysteriaceae, Mytilinidiaceae and Gloniaceae (Pleosporomycetidae, Dothideomycetes) with keys to world species. Stud Mycol 64:49–83

    CAS  PubMed Central  PubMed  Google Scholar 

  19. Boerema GH (1997) Contributions towards a monograph of Phoma (coelomycetes) – V. Subdivision of the genus in sections. Mycotaxon 64:321–333

    Google Scholar 

  20. Boonmee S, Ko Ko TW, Chukeatirote E, Hyde KD, Chen H, Lei C, McKenzie EHC, Jones EBG, Rampai K, Bahkali AH (2012) Kirschsteiniotheliaceae fam. nov. Mycologia 104:698–714

    PubMed  Google Scholar 

  21. Boonmee S, Bhat JD, Maharachchikumbura SSN, Hyde KD (2014a) Clavatispora thailandica gen. et sp. nov., a novel taxon of Venturiales (Dothideomycetes) from Thailand. Phytotaxa 176(1):92–101

    Google Scholar 

  22. Boonmee S, Rossman AY, Liu JK, Li WJ, Dai DQ, Bhat JD, Jones EBG, McKenzie EHC, Xu JC, Hyde KD (2014b) Tubeufiales, ord. nov., integrating sexual and asexual generic names. Fungal Divers 68:239–298

  23. Braun U, Crous PW, Dugan F, Groenewald JZ, de Hoog GS (2003) Phylogeny and taxonomy of cladosporium-like hyphomycetes, including Davidiella gen. nov., the teleomorph of Cladosporium s. str. Mycol Prog 2:3–18

    Google Scholar 

  24. Braun U, Nakashima C, Crous PW (2013) Cercosporoid fungi (Mycosphaerellaceae) 1. Species on othe fungi, Pteridophyta and Gymnospermae. IMA Fungus 4:265–345

    PubMed Central  PubMed  Google Scholar 

  25. Briquet J, Flahault C, Harms H, Rendle AB (1906) Règles Internationales de la Nomenclature Botanique adoptées par le Congrès International de Botanique de Vienne 1905. Gustav Fischer, Jena

    Google Scholar 

  26. Campbell J, Ferrer A, Raja HA, Sivichai S, Shearer CA (2007) Phylogenetic relationships among taxa in theJahnulales inferred from 18S and 28S nuclear ribosomal DNA sequences. Can J Bot 85:873–882

  27. Cannon PF, Kirk PM (2000) The philosophy and practicalities of amalgamating anamorph and teleomorph concepts. Stud Mycol 45:19–25

    Google Scholar 

  28. Carmichael JW, Kendrick WB, Conners IL, Sigler L (1980) Genera of Hyphomycetes. Universityof Alberta Press, Alberta, p 386

    Google Scholar 

  29. Carnegie AJ, Keane PJ (2003) Variation in severity of target spot, caused by Aulographina eucalypti, in a Eucalypt species and provenance trial in Victoria. Aust Plant Pathol 32(3):393–402

    Google Scholar 

  30. Cheewangkoon R, Groenewald JZ, Summerell BA, Hyde KD, To-anun C, Crous PW (2009) Myrtaceae, a cache of fungal biodiversity. Persoonia 23:55–85

    CAS  PubMed Central  PubMed  Google Scholar 

  31. Chomnunti P, Schoch CL, Aguirre-Hudson B, KoKo TW, Hongsanan S, Jones EBG, Kodsueb R, Phookamsak R, Chukeatirote E, Bahkali AH, Hyde KD (2011) Capnodiaceae. Fungal Divers 51:103–134

    PubMed Central  PubMed  Google Scholar 

  32. Chung KR (2011) Elsinoë fawcettii and Elsinoë australis: the fungal pathogens causing citrus scab. Mol Plant Pathol 12(2):123–135

    CAS  PubMed  Google Scholar 

  33. Cortinas MN, Burgess T, Dell B, Xu D, Crous PW, Wingfield BD, Wingfield MJ (2006) First record of Colletogloeopsis zuluensis comb. nov., causing stem canker of Eucalyptus in China. Mycol Res 110:229–236

    PubMed  Google Scholar 

  34. Crous PW, Kendrick WB (1994) Arnaudiella eucalyptorum sp. nov. (Dothideales, Ascomycetes) and its hyphomycetos anamorph Xenogliocladiopsis gen. nov. from Eucalyptus leaf litter in South Africa. Can J Bot 72:59–64

    Google Scholar 

  35. Crous PW, Groenewald JZ, Wingfield MJ, Aptroot A (2003) The value of ascospore septation in separating Mycosphaerella from Sphaerulina in the Dothideales: a Saccardoan myth ? Sydowia 55(2):136–152

    Google Scholar 

  36. Crous PW, Groenewald JZ, Mansilla JP, Hunter GC, Wingfield MJ (2004) Phylogenetic reassessment of Mycosphaerella spp. and their anamorphs occurring on Eucalyptus. Stud Mycol 50:195–214

    Google Scholar 

  37. Crous PW, Braun U, Groenewald JZ (2007) Mycosphaerella is polyphyletic. Stud Mycol 58:1–32

    CAS  PubMed Central  PubMed  Google Scholar 

  38. Crous PW, Summerell BA, Carnegie AJ, Wingfield MJ, Hunter GC, Burgess TI, Andjic V, Barber PA, Groenewald JZ (2009) Unravelling Mycosphaerella: do you believe in genera? Persoonia 23:99–118

    CAS  PubMed Central  PubMed  Google Scholar 

  39. Crous PW, Summerell BA, Swart L, Denman S, Taylor JE, Bezuidenhout CM, Palm ME, Marincowitz S, Groenewald JZ (2011) Fungal pathogens of Proteaceae. Persoonia 27:20–45

    CAS  PubMed Central  PubMed  Google Scholar 

  40. Crous PW, Braun U, Hunter GC, Wingfield MJ, Verkley GJM, Shin H-D, Nakashima C, Groenewald JZ (2012) Phylogenetic lineages in Pseudocercospora. Stud Mycol 75:37–114

    PubMed Central  Google Scholar 

  41. Crous PW, Wingfield MJ, Guarro J, Cheewangkoon R, van der Bank M et al (2013) Fungal Planet description sheets: 154–213. Persoonia 31:188–296

    CAS  PubMed Central  PubMed  Google Scholar 

  42. Crous PW, Shivas RG, Quaedvlieg W, van der Bank M, Zhang Y, Summerell BA, Guarro J, Wingfield MJ, Wood AR, Alfenas AC, Braun U, Cano-Lira JF, García D, Marin-Felix Y, Alvarado P, Andrade JP, Armengol J, Assefa A, den Breeÿen A, Camele I, Cheewangkoon R, De Souza JT, Duong TA, Esteve-Raventós F, Fournier J, Frisullo S, García-Jiménez J, Gardiennet A, Gené J, Hernández-Restrepo M, Hirooka Y, Hospenthal DR, King A, Lechat C, Lombard L, Mang SM, Marbach PAS, Marincowitz S, Marin-Felix Y, Montaño-Mata NJ, Moreno G, Perez CA, Pérez Sierra AM, Robertson JL, Roux J, Rubio E, Schumacher RK, Stchigel AM, Sutton DA, Tan YP, Thompson EH, van der Linde E, Walker AK, Walker DM, Wickes BL, Wong PTW, Groenewald JZ (2014) Fungal Planet Description Sheets: 214–280. Persoonia 32:184–306

    CAS  PubMed Central  PubMed  Google Scholar 

  43. Da Cunha KC, Sutton DA, Fothergill AW, Cano J, Gené J, Madrid H, de Hoog S, Crous PW, Guarro J (2012) Diversity of Bipolaris species in clinical samples in the United States and their antifungal susceptibility profiles. J Clin Microbiol 50:4061–4066

    PubMed Central  PubMed  Google Scholar 

  44. Da Cunha KC, Sutton DA, Fothergill AW, Gené J, Cano J, Madrid H, de Hoog GS, Crous PW, Guarro J (2013) In vitro antifungal susceptibility and molecular identity of 99 clinical isolates of the opportunistic fungal genus Curvularia. Diagn Microbiol Infect Dis 76:168–174

    PubMed  Google Scholar 

  45. Dai DQ, Bahkali AH, Bhat DJ, Xiao YP, Chukeatirote E, Zhao RL, Mckenzie EHC, Xu JC, Hyde KD (2014a) Towards a natural classification of Dothideomycetes 3: The genera Muellerites, Trematosphaeriopsis, Vizellopsis and Yoshinagella (Dothideomycetes incertae sedis). Phytotaxa 176(1):18–27

    Google Scholar 

  46. Dai DQ, Boonmee S, Tian Q, Xiao YP, Bhat JD, Chukeatirote E, Alias SA, Zhao RL, Wang Y, Hyde KD (2014b) Englerulaceae (Dothideomycetes). Phytotaxa 176(1):139–155

    Google Scholar 

  47. Dai DQ, Wijayawardene NN, Bhat DJ, Chukeatirote E, Zhao RL, Wang Y, Bahkali AH, Hyde KD (2014c) The Phylogenetic Placement of Eriosporella bambusicola sp. nov. in Capnodiales. Cryptogam Mycol 35(1):41–49

    Google Scholar 

  48. Damm U, Verkley GJM, Crous PW, Fourie PH, Haegi A, Riccioni L (2008) Novel Paraconiothyrium species on stone fruit trees and other woody hosts. Persoonia 20:9–17

    CAS  PubMed Central  PubMed  Google Scholar 

  49. de Gruyter J, Aveskamp MM, Woudenberg JHC, Verkley GJM, Groenewald JZ, Crous PW (2009) Molecular phylogeny of Phoma and allied anamorph genera: Towards a re-classification of the Phoma complex. Mycol Res 113:508–519

    PubMed  Google Scholar 

  50. de Gruyter J, Woudenberg JHC, Aveskamp MM, Verkley GJM, Groenewald JZ, Crous PW (2010) Systematic reappraisal of species in Phoma section Paraphoma, Pyrenochaeta and Pleurophoma. Mycologia 102:1066–1081

    PubMed  Google Scholar 

  51. de Gruyter J, Woudenberg JHC, Aveskamp MM, Verkley GJM, Groenewald JZ, Crous PW (2013) Redisposition of Phoma-like anamorphs in Pleosporales. Stud Mycol 75:1–36

    PubMed Central  PubMed  Google Scholar 

  52. de Hoog GS, Hijwegen T, Batenburg-van der Vegte WH (1991) A new species of Dissoconium. Mycol Res 95:679–682

    Google Scholar 

  53. De Wit PJGM, van der Burgt A, Ökmen B, Stergiopoulos I, Abd-Elsalam K, Aerts AL, Bahkali AHA, Beenen HG, Chettri P, Cox MP, Datema E, de Vries RP, Dhillon B, Ganley AR, Griffiths S, Guo Y, Hamelin RC, Henrissat B, Kabir MS, Karimi Jashni M, Kema G, Klaubauf S, Lapidus A, Levasseur A, Lindquist E, Mehrabi R, Ohm RA, Owen TJ, Salamov A, Schwelm A, Schijlen E, Sun H, van den Burg HA, van Ham RCHJ, Zhang S, Goodwin SB, Grigoriev IV, Collemare J, Bradshaw RE (2012) The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry. PLoS Genet 8:e1003088

    PubMed Central  PubMed  Google Scholar 

  54. Dissanayake AJ, Jayawardena RS, Boonmee S, Thambugala KM, Senanayake IC, Tain Q, Mapook A, Yan JY, Li YM, Li XH, Chukeatirote E, Hyde KD (2014) The status of family Myriangiaceae (Dothideomycete). Phytotaxa 176(1):219–237

    Google Scholar 

  55. Doilom M, Liu JK, Jaklitsch WM, Ariyawansa H, Wijayawardene NN, Chukeatirote E, Zhang M, McKenzie EHC, Geml J, Voglmayr H, Hyde KD (2013) An outline of the family Cucurbitariaceae. Sydowia 65(1):167–192

    Google Scholar 

  56. Egidi E, de Hoog GS, Isola D, Onofri S, Quaedvlieg W, de Vries M, Verkley GJM, Stielow JB, Zucconi L, Selbmann L (2014) Phylogeny and taxonomy of meristematic rock-inhabiting black fungi in the Dothideomycetes based on multi-locus phylogenies. Fungal Divers 65:127–165

    Google Scholar 

  57. Ellis MB (1971) Demattaceous Hyphomycetes. Commonwealth Mycological Institute, Kew

    Google Scholar 

  58. Ellis MB (1976) More Dematiaceous Hyphomycetes. Commonwealth Mycological Institute, Kew

    Google Scholar 

  59. Ellwood SR, Liu Z, Syme RA, Lai Z, Hane JK, Keiper F, Moffat CS, Oliver RP, Friesen TL (2010) A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres. Genome Biol 11:R109

    PubMed Central  PubMed  Google Scholar 

  60. Giraldo A, Gené J, Sutton DA, Madrid H, Cano J, Crous PW, Guarro J (2014) Phylogenetic circumscription of Arthrographis (Eremomycetaceae, Dothideomycetes). Persoonia 32:102–114

    CAS  PubMed Central  PubMed  Google Scholar 

  61. Glienke C, Pereira OL, Stringari D, Fabris J, Kava-Cordeiro V, Galli-Terasawa L, Cunnington J, Shivas RG, Groenewald JZ, Crous PW (2011) Endophytic and pathogenic Phyllosticta species, with reference to those associated with Citrus Black Spot. Persoonia 26:47–56

    CAS  PubMed Central  PubMed  Google Scholar 

  62. Goodwin SB, Dunkle LD, Zismann VL (2001) Phylogenetic analysis of Cercospora and Mycosphaerella based on the internal transcribed spacer region of ribosomal DNA. Phytopathol 91:648–658

    CAS  Google Scholar 

  63. Groenewald JZ, Nakashima C, Nishikawa J, Shin H-D, Park J-H, Jama AN, Groenewald M, Braun U, Crous PW (2013) Species concepts in Cercospora: spotting the weeds among the roses. Stud Mycol 75:115–170

    CAS  PubMed Central  PubMed  Google Scholar 

  64. Hall T (2004) BioEdit v. 7.0.1. Department of Microbiology, North Carolina State University. Available at www.mbio.ncsu.edu/ BioEdit/bioedit.html

  65. Hawksworth DL (2012) Managing and coping with names of pleomorphic fungi in a period of transition. Mycosphere 3(2): 143–155; IMA Fungus 3 (1): 15–24

  66. Hillis DM, Bull JJ (1993) An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst Biol 42:182

    Google Scholar 

  67. Höhnel F von (1909) Fragmente zur Mykologie: VII. Mitteilung (Nr. 289 bis 353). Sitzungsberichte der Kaiserlichen Akademie der Wissenschaften Math.-naturw. Klasse Abt. I. 118: 813–904

  68. Hongsanan S, Bahkali AH, McKenzie EHC, Chukeatirote E, Hyde KD (2014a) Trichopeltinaceae (Dothideomycetes), an earlier name for Brefeldiellaceae, with a new species of Trichopeltina. Phytotaxa 176(1):270–282

  69. Hongsanan S, Chomnunti P, Crous PW, Chukeatirote E, Hyde KD (2014b) Introducing Chaetothyriothecium, a new genus of Microthyriales. Phytotaxa 161(2):157–164

    Google Scholar 

  70. Hongsanan S, Li YM, Liu JK, Hofmann T, Piepenbring M, Jones EBG, Bhat JD, Boonmee S, Doliom M, Singtripop C, Tian Q, Mapook A, Zeng X, Xu JC, Wu XH, Hyde KD (2014c) Revision of Asterinales. Fungal Divers 68:1–68

  71. Hosagoudar VB (2003) Studies on foliicolous fungi – XIII a new genus and a new species. Zoos' Print J 18(8):1159–1162

    Google Scholar 

  72. http://www.indexfungorum.org/names/names.asp

  73. Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinform 17:754–755

    CAS  Google Scholar 

  74. Hughes SJ (1976) Sooty moulds. Mycologia 68(4):693–820

    Google Scholar 

  75. Hughes SJ (1978) New Zeland Fungi 25. Miscellaneous species. NZ J Bot 16:311–370

    Google Scholar 

  76. Hughes SJ (2000) Antennulariella batistae n. sp. and its Capnodendron and Antennariella synanamorphs, with notes on Capnodium capsuliferum. Can J Bot 78(9):1215–1226

    Google Scholar 

  77. Hyde KD (1997) The genus Roussoëlla, including two new species from palms in Cuyabeno, Ecuador. Mycol Res 101:609–616

    Google Scholar 

  78. Hyde KD, Eriksson OE, Yue JZ (1996) Roussoëlla, an ascomycete genus of uncertain relationships with a Cytoplea anamorph. Mycol Res 100:1522–1528

    Google Scholar 

  79. Hyde KD, McKenzie EHC, KoKo TW (2011) Towards incorporating anamorphic fungi in a natural classification – checklist and notes for 2010. Mycosphere 2:1–88

  80. Hyde KD, Jones EBG, Lui J-K, Ariyawansa H, Boehm E et al (2013) Families of Dothideomycetes. Fungal Divers 63:1–313

    Google Scholar 

  81. Hyde KD, Nilsson RH, Alias SA, Ariyawansa HA, Blair JE, Cai L, et al. (2014) One stop shop: backbones trees for important pytopathogenic genera: I. Fungal Divers 67:21–125

  82. Jayawardena RS, Ariyawansa HA, Singtripop C, Li YM, Yan JY, Li XH, Nilthong S, Hyde KD (2014) A re-assessment of Elsinoaceae (Myriangiales, Dothideomycetes). Phytotaxa 176(1):120–138

    Google Scholar 

  83. Kang JC, Kong RYC, Hyde KD (1998) Studies on the Amphisphaeriales l. Amphisphaeriaceae (sensu stricto) and its phylogenetic relationships inferred from 5.8S rDNAand ITS2 sequences. Fungal Divers 1:147–157

    Google Scholar 

  84. Kendrick B (ed) (1979) The Whole Fungus: the sexual-asexual synthesis. 2 vols. National Museums of Canada, Ottawa

    Google Scholar 

  85. Kirk PM, Cannon PF, Minter DW, Stalpers JA (2008) Ainsworth & Bisby's Dictionary of the Fungi, 10th edn. CABI, Wallingford

    Google Scholar 

  86. Kirk PM, Stalpers JA, Braun U, Crous PW, Hansen K et al (2013) A without-prejudice list of generic names of fungi for protection under the International Code of Nomenclature for algae, fungi and plants. IMA Fungus 4:381–443

    PubMed Central  PubMed  Google Scholar 

  87. Lawrence DP, Park MS, Pryor BM (2012) Nimbya and Embellisia revisited, with nov. comb. for Alternaria celosiae and A. perpunctulata. Mycol Prog 11:799–815

    Google Scholar 

  88. Leonard KJ, Suggs EG (1974) Setosphaeria prolata, the ascigerous state of Exserohilum prolatum. Mycologia 66(2):281–297

    Google Scholar 

  89. Li HY, Sun GY, Zhai XR, Batzer JC, Mayfield DA, Crous PW, Groenewald JZ, Gleason ML (2012) Dissoconiaceae associated with sooty blotch and flyspeck on fruits in China and the United States. Persoonia 28:113–125

    PubMed Central  PubMed  Google Scholar 

  90. Li WJ, Bhat JD, Hyde KD, Wang Y (2014) Towards a natural classification of Dothideomycetes 4: The genera Bryopelta, Bryorella, Bryosphaeria, Lophiosphaerella and Maireella (Dothideomycetes incertae sedis). Phytotaxa 176(1):28–41

    Google Scholar 

  91. Liu JK, Phookamsak R, Jones EBG, Zhang Y, Ko-Ko TW, Hu HL, Boonmee S, Doilom M, Chukeatirote E, Bahkali AH, Wang Y, Hyde KD (2011) Astrosphaeriella is polyphyletic, with species in Fissuroma gen. nov., and Neoastrosphaeriella gen. nov. Fungal Divers 51:135–154

    Google Scholar 

  92. Liu JK, Phookamsak R, Doilom M, Wikee S, Li Y-M et al (2012) Towards a natural classification of Botryosphaeriales. Fungal Divers 57:149–210

    Google Scholar 

  93. Liu JK, Phookamsak P, Dai DQ, Tanaka K, Jones EBG, Xu JC, Chukeatirote E, Hyde KD (2014) Roussoellaceae, a new pleosporalean family to accommodate the genera Neoroussoella gen. nov., Roussoella and Roussoellopsis. Phytotaxa 181:1–33

  94. Lumbsch HT, Huhndorf SM (2010) Myconet Volume 14. Part one. Outline of Ascomycota 2009. Part Two. Notes on Ascomycete Systematics. Nos. 4751–5113. Fieldiana Life Earth Sci 1:1–64

    Google Scholar 

  95. Machouart M, Samerpitak K, de Hoog GS, Gueidan C (2014) A multigene phylogeny reveals that Ochroconis belongs to the family Sympoventuriaceae (Venturiales, Dothideomycetes). Fungal Divers 65:77–88

    Google Scholar 

  96. Malloch D, Sigler L (1988) The Eremomycetaceae (Ascomycotina). Can J Bot 66:1929–1932

    Google Scholar 

  97. Manamgoda DS, Cai L, McKenzie EHC, Crous PW, Madrid H, Chukeatirote E, Shivas RG, Tan YP, Hyde KD (2012) A phylogenetic and taxonomic re-evaluation of the Bipolaris-Cochliobolus-Curvularia complex. Fungal Divers 56:131–144

    Google Scholar 

  98. Manning VA, Pandelova I, Dhillon B, Wilhelm LJ, Goodwin SB, Berlin AM, Figueroa M, Freitag M, Hane JK, Henrissat B, Holman WH, Kodira CD, Martin J, Oliver RP, Robbertse B, Schackwitz W, Schwartz DC, Spatafora JW, Turgeon BG, Yandava C, Young S, Zhou S, Zeng Q, Grigoriev IV, Ma LJ, Ciuffetti LM (2013) Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence. G3 (Bethesda) 3(1):41–63

    CAS  Google Scholar 

  99. Markovskaja S, Kačergius A, Treigienė A (2011) Occurrence of new alien pathogenic fungus Mycosphaerella dearnessii in Lithuania. Bot Lith 17(1):29–37

    Google Scholar 

  100. Matsushima T (2003) Matsushima Mycological Memoirs 10:1–214. (Originally published on CD-ROM in PDF format Oct. 2001; effectively published 10 Feb. 2003 through distribution of two hard-copies.)

  101. Mchau GRA, Crous PW, Phillips AJL (1998) Molecular characterization of some Elsinoë isolates from leguminous hosts. Plant Pathol 47:773–779

    CAS  Google Scholar 

  102. McNeill J, Barrie FR. Buck WR, Demoulin V, Greuter W, Hawksworth DL, Herendeen PS, Knapp S, Marhold K, Prado J, Prud'homme van Reine WF, Smith GE, Wiersema JH, Turland NJ (eds). 2012 International Code of Nomenclature for algae, fungi, and plants (Melbourne Code) adopted by the Eighteenth International Botanical Congress Melbourne, Australia, July 2011. [Regnum Vegetabile No. 154.] Königsten: Koeltz Scientific Books

  103. Minnis AM, Kennedy AH, Grenier DB, Palm ME, Rossman AY (2012) Phylogeny and taxonomic revision of the Planistromellaceae including its coelomycetous anamorphs: contributions towards a monograph of the genus Kellermania. Persoonia 29:11–28

    CAS  PubMed Central  PubMed  Google Scholar 

  104. Monkai J, Liu JK, Boonmee S, Chomnunti P, Chukeatirote E, Jones EBG, Wang Y, Hyde KD (2013) Planistromellaceae (Botryosphaeriales). Cryptogam Mycol 34:45–77

    Google Scholar 

  105. Monterio FT, Vieira BS, Barreto RB (2003) Curvularia lunata and Phyllachora sp.: two fungal pathogens of the grassy weed Hymenachne amplexicaulis from Brazil. Aust Plant Pathol 32:449–453

    Google Scholar 

  106. Moore RT (1962) Hiospira, a new genus of the Helicosporae. Trans Br Mycol Soc 45:143–146

    Google Scholar 

  107. Muggia L, Hafellner J, Wirtz N (2008) The sterile microfilamentous lichenized fungi Cystocoleus ebeneus and Racodium rupestre are relatives of plant pathogens and clinically important dothidealean fungi. Mycol Res 112:50–56

    CAS  PubMed  Google Scholar 

  108. Nannizzi A (1934) Repertorio sistematico dei miceti dell' uomo e degli animali. 4: 1–557

  109. Nilsson RH, Hyde KD, Pawłowska J, Ryberg M, Tedersoo L et al (2014) Improving ITS sequence data for identification of plant pathogenic fungi. Fungal Divers 67:1–9

    Google Scholar 

  110. Nylander JAA (2004) MrModeltest 2.0. Program distributed by the author. Evolutionary Biology Centre, Uppsala University

  111. Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, Barry KW, Condon BJ, Copeland AC, Dhillon B, Glaser F, Hesse CN, Kosti I, LaButti K, Lindquist EA, Lucas S, Salamov AA, Bradshaw RE, Ciuffetti L, Hamelin RC, Kema GHJ, Lawrence C, Scott JA, Spatafora JW, Turgeon BG, de Wit PGJM, Zhong S, Goodwin SB, Grigoriev IV (2012) Diverse life styles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes Fungi. PLoS Pathog 8(12):e1003037

    CAS  PubMed Central  PubMed  Google Scholar 

  112. Page RDM (1996) Tree View: an application to display phylogenetic trees on personal computers. Comput Appl Bios 12:357–358

    CAS  Google Scholar 

  113. Peever TL, Barve MP, Stone LJ, Kaiser WJ (2007) Evolutionary relationships among Ascochyta species infecting wild and cultivated hosts in the legume tribes Cicereae and Vicieae. Mycologia 99:59–77

    CAS  PubMed  Google Scholar 

  114. Pereira-Carvalho RC, Inácio CA, Dianese JC (2010) Plurispermiopsis: a new capnodiceous genus from the Brazilian Cerrado. Mycologia 102(5):1163–1166

    CAS  PubMed  Google Scholar 

  115. Pérez-Ortega S, Suija A, Crespo A, de los Ríos A (2014) Lichenicolous fungi of the genus Abrothallus (Dothideomycetes: Abrothallales ordo nov.) are sister to the predominantly aquatic Jahnulales. Fungal Divers 64:295–304

    Google Scholar 

  116. Petrak F (1952) Fungi Beltsvillensis. III. Sydowia 6(1–4):5–16

    Google Scholar 

  117. Petrak F (1953) Cyclopeltis n. gen., eine neue Gattung der Polystomellaceen. Sydowia 7(5–6):370–374

    Google Scholar 

  118. Petrak F (1954) Anthracostroma n. gen., eine neue Gattung der dothidealen Pyrenomyzeten. Sydowia 8(1–6):96–99

    Google Scholar 

  119. Petrak F (1958) Singeriella n. gen., eine neue, mit den Entopeltaceen verwandte Gattung aus den Hochgebirgen Perus. Sydowia 12(1–6):252–257

    Google Scholar 

  120. Petrak F (1962) Mykologische Bemerkungen. Sydowia 15:204–217

    Google Scholar 

  121. Petrak F, Sydow H (1927) Die Gattungen der Pyrenomyzeten, Sphaeropsideen und Melanconieen. Beih. Rep. spec. nov. regniveg. 42: 1–551

  122. Phillips AJL, Alves A, Pennycook SR, Johnston PR, Ramaley A, Akulov A, Crous PW (2008) Resolving the phylogenetic and taxonomic status of dark-spored teleomorph genera in the Botryosphaeriaceae. Persoonia 21:29–55

    CAS  PubMed Central  PubMed  Google Scholar 

  123. Phillips AJL, Alves A, Abdollahzadeh J, Slippers B, Wingfield MJ, Groenewald JZ, Crous PW (2013) The Botryosphaeriaceae: genera and species known from culture. Stud Mycol 76:51–167

    CAS  PubMed Central  PubMed  Google Scholar 

  124. Phookamsak R, Liu JK, Chukeatirote E, McKenzie EHC, Hyde KD (2013) Phylogeny and morphology of Leptosphaerulina saccharicola sp. nov. and Pleosphaerulina oryzae and relationships with Pithomyces. Cryptogam Mycol 34(4):303–319

    Google Scholar 

  125. Phookamsak R, Liu JK, McKenzie EHC, Manamgoda DS, Chatpapamon C, Ariyawansa HA, Thambugala KM, Dai DQ, Camporesi E, Chukeatirote E, Wijayawardene NN, Mortimer PE, Xu JC, Hyde KD (2014) Revision of Phaeosphaeriaceae. Fungal Divers 68:159–238

  126. Quaedvlieg W, Kema GHJ, Groenewald JZ, Verkley GJM, Seifbarghi S, Razavi M, Mirzadi Gohari A, Mehrabi R, Crous PW (2011) Zymoseptoria gen. nov.: a new genus to accommodate septoria-like species occurring on graminicolous hosts. Persoonia 26:57–69

    CAS  PubMed Central  PubMed  Google Scholar 

  127. Quaedvlieg W, Groenewald JZ, de Jesús Y-MM, Crous PW (2012) DNA barcoding of Mycosphaerella species of quarantine importance to Europe. Persoonia 29:101–115

    CAS  PubMed Central  PubMed  Google Scholar 

  128. Quaedvlieg W, Verkley GJM, Shin H-D, Barreto RW, Algenas AC, Swart WJ, Groenewald JZ, Crous PW (2013) Sizing up Septoria. Stud Mycol 75:307–390

    CAS  PubMed Central  PubMed  Google Scholar 

  129. Quaedvlieg W, Binder M, Groenewald JZ, Summerell BA, Carnegie AJ, Burgess TI, Crous PW (2014) Introducing the consolidated species concept to resolve species in the Teratosphaeriaceae. Persoonia 33:1–40

    Google Scholar 

  130. Ramaley AW (1993) New fungi from Yucca: Planistromella yuccifoliorum, gen. et sp. nov., its anamorph, Kellermania yuccifoliorum, sp. nov., and Planistromella uniseptata, sp. nov., the teleomorph of Kellermania yuccigena. Mycotaxon 47:259–274

    Google Scholar 

  131. Ramaley AW (1995) New fungi from Dasylirion (Agavaceae). Aliso 14(2):152

    Google Scholar 

  132. Ramaley AW (1996) Comminutispora gen. nov. and its Hyphospora gen. nov. anamorph. Mycologia 88(1):132–136

    Google Scholar 

  133. Ramaley AW (2005) The connection of Dothidotthia aspera (Botryosphaeriaceae) to a hyphomycetous anamorphic fungus, Thyrostroma negundinis. Mycotaxon 94:127–132

    Google Scholar 

  134. Ramaley AW, Barr ME (1997) Syncarpella ribis sp. nov. and its anamorph, Syntholus ribis gen. et sp. nov. Mycotaxon 65:499–506

    Google Scholar 

  135. Rannala B, Yang Z (1996) Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. J Mol Evol 43:304–311

    CAS  PubMed  Google Scholar 

  136. Rossman AY, Manamgoda DS, Hyde KD (2013) Proposal to conserve the name Bipolaris against Cochliobolus (Ascomycota: Pleosporales: Pleosporaceae). Taxon 62(6):1331–1332

    Google Scholar 

  137. Roux C (1986) Leptosphaerulina chartarum sp. nov., the teleomorph of Pithomyces chartarum. Trans Br Mycol Soc 86(2):319–323

    Google Scholar 

  138. Saccardo PA (1880) Conspectus generum fungorum Italiae inferiorum nempe ad Sphaeropsideas, Melanconieas et Hyphomyceteas pertinentium systemate sporologico dispositorum. Michelia 2(6):1–38

    Google Scholar 

  139. Saccardo PA (1904) De Diagnostica et nomenclatura mycologica, Admonita quaedam. Annales Mycologici 2:195–198. [English translation by Clements FE (1904) J Mycol10: 109–112]

  140. Samuels GJ, Rogers JD (1986) Botryohypoxylon gen.nov. and its anamorph, Iledon gen. nov. Mycotaxon 25(2):629–637

    Google Scholar 

  141. Schoch CL, Shoemaker RA, Seifert KA, Hambleton S, Spatafora JW, Crous PW (2006) A multigene phylogeny of Dothideomycetes using four nuclear loci. Mycologia 98:1041–1052

    CAS  PubMed  Google Scholar 

  142. Schoch CL, Crous PW, Groenewald JZ, Boehm EWA, Burgess TI, de Gruyter J et al (2009) A class-wide phylogenetic assessment of Dothideomycetes. Stud Mycol 64(1):1–15

    CAS  PubMed Central  PubMed  Google Scholar 

  143. Seifert K, Morgan-Jones G, Gams W, Kendrick B (2011) The Genera of Hyphomycetes. CBS-KNAW Fungal Biodiversity Centre Utrecht, The Netherlands

    Google Scholar 

  144. Shoemaker RA (1962) Drechslera Ito. Can J Bot 40:809–936

    Google Scholar 

  145. Shoemaker RA, Babcock CE, Irwin JAG (1991) Massarina walkeri n. sp., the teleomorph of Acrocalymma medicaginis from Medicago sativa contrasted with Leptosphaeria pratensis, L. weimeri n. sp., and L. viridella. Can J Bot 69(3):569–573

    Google Scholar 

  146. Silvestro D, Michalak I (2010) raxmlGUI: a graphical front-end for RAxML http://sourceforge.net/projects/raxmlgui/. Accessed August 2010

  147. Simmons EG (1986) Alternaria themes and variations (22–26). Mycotaxon 25(1):287–308

    Google Scholar 

  148. Simmons EG (2002) Alternaria themes and variations (305–309). Lewia/Alternaria revisited. Mycotaxon 83:127–145

    Google Scholar 

  149. Simmons EG (2007) Alternaria: an identification manual. [CBS Biodiversity Series no. 6.] Utrecht: CBS-KNAW Fungal Biodiversity Centre

  150. Simon UK, Groenewald JZ, Crous PW (2009) Cymadothea trifolii, an obligate biotrophic leaf parasite of Trifolium, belongs to Mycosphaerellaceae as shown by nuclear ribosomal DNA analyses. Persoonia 22:49–55

    CAS  PubMed Central  PubMed  Google Scholar 

  151. Siu K, Lzumi AK (2004) Phaeohyphomycosis caused by Coniothyrium. Cutis 73:127–130

    PubMed  Google Scholar 

  152. Sivanesan A (1983) Studies on ascomycetes. Trans Br Mycol Soc 81(2):313–332

    Google Scholar 

  153. Sivanesan A (1984) The Bitunicate Ascomycetes and their Anamorphs. J. Cramer, Vaduz

    Google Scholar 

  154. Sivanesan A (1996) Corynesporasca caryotae gen. et sp. nov. with a Corynespora anamorph, and the family Corynesporascaceae. Mycol Res 100(7):783–788

    Google Scholar 

  155. Sivanesan A, Hsieh WH (1989) Kentingia and Setocampanula, two new genera. Mycol Res 93:83–90

  156. Sivichai S, Sri-indrasudhi V, Jones EBG (2011) Jahnula aquatic and its anamorph Xylomyces chlamydosporus on submerged wood in Thailand. Mycotaxon 116:137–142

    Google Scholar 

  157. Slippers B, Crous PW, Denman S, Coutinho TA, Wingfield BD, Wingfield MJ (2004) Combined multiple gene genealogies and phenotypic characters differentiate several species previously identified as Botryosphaeria dothidea. Mycologia 96(1):83–101

    CAS  PubMed  Google Scholar 

  158. Slippers B, Boissin E, Phillips AJL, Groenewald JZ, Wingfield MJ et al (2013) Phylogenetic lineages in the Botryosphaeriales: A systematic and evolutionary framework. Stud Mycol 76:31–49

    CAS  PubMed Central  PubMed  Google Scholar 

  159. Speer EO (1986) A propos de champignons du Brésil III. Mytilidion resinae sp. nov. (Hysteriales) et sa forme conidienne, Camaroglobulus resinae gen. et spec. nov. (Sphaeropsidales). Bulletin de la Société Mycologique de France 102: 97–100

  160. Spooner BM, Kirk PM (1982) Taxonomic notes on Excipularia and Scolicosporium. Trans Br Mycol Soc 78:247–257

    Google Scholar 

  161. Stamatakis A (2006) RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinforma 22:2688–2690

    CAS  Google Scholar 

  162. Stergiopoulos I, Kourmpetis YAI, Slot JC, Bakker FT, De Wit JPGM, Rokas A (2012) In silico characterization and molecular evolutionary analysis of a novel superfamily of fungal effector proteins. Mol Biol Evol 29(11):3371–3384

    CAS  PubMed  Google Scholar 

  163. Stewart EL, Liu Z, Crous PW, Szabo L (1999) Phylogenetic relationships among some cercosporoid anamorphs of Mycosphaerella based on rDNA sequence analysis. Mycol Res 103:1491–1499

    CAS  Google Scholar 

  164. Stukenbrock EH, Quaedvlieg W, Javan-Nikhah M, Zala M, Crous PW, McDonald BA (2012) Zymoseptoria ardabiliae and Z. pseudotritici, two progenitor species of the Septoria tritici leaf blotch fungus Z. tritici (synonym: Mycosphaerella graminicola). Mycologia 104(6):1397–1407

    PubMed  Google Scholar 

  165. Su YY, Cai L (2012) Polyphasic characterisation of three new Phyllosticta spp. Persoonia 28:76–84

    CAS  PubMed Central  PubMed  Google Scholar 

  166. Subramaniam CV (1972) Pirozynskia, a new hyphomycete genus. Curr Sci 41(19):711–712

    Google Scholar 

  167. Subramanian CV, Sekar G (1982) Thaxteriellopsis lingicola and its Moorella anamorph. Plant Sci 91(1):1–7

    Google Scholar 

  168. Suetrong S, Boonyue N, Pang KL, Ueapattanakit J, Klaysuban A, Sri-Inddrasutdhi V, Sivichai S, Jones EBG (2011) A taxonomic revision and phylogenetic reconstruction of the Jahnulales (Dothideomycetes), and the new family Manglicolaceae. Fungal Divers 51:163–188

    Google Scholar 

  169. Suetrong S, Rungjindamai N, Sommai S, Rung-Areerate P, Sommrithipol S, Jones EBG (2014) Wiesneriomyces a new lineage of Dothideomycetes (Ascomycota) basal to Tubeufiales. Phytotaxa 176(1):283–297

    Google Scholar 

  170. Sutton BC (1980) The Coelomycetes: fungi imperfecti with pycnidia, acervuli and stromata. Commonwealth Mycological Institute, Kew

    Google Scholar 

  171. Sutton BC (1984) Notes on Titaea (Hyphomycetes). Trans Br Mycol Soc 83:399–413

    Google Scholar 

  172. Swart L, Crous PW, Kang JC, Mchau GRA, Pascoe I, Palm ME (2001) Differentiation of species of Elsinoe associated with scab disease of proteaceae based morphology, symptomatology, and ITS sequence phylogeny. Mycologia 93(2):366–379

    Google Scholar 

  173. Swofford DL (2002) PAUP: phylogenetic analysis using parsimony, version 4.0 b10. Sinauer Associates, Sunderland

    Google Scholar 

  174. Takuya S, Takao T (2012) Exserohilum neoregeliae sp. nov., a new pathogen of Neoregelia carolinae. Mycotaxon 118:213–218

  175. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary dfistance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739

    CAS  PubMed Central  PubMed  Google Scholar 

  176. Tanaka K, Harada Y (2005) Bambusicolous fungi in Japan (4): a new combination, Astrosphaeriella aggregata. Mycoscience 46:114–118

    Google Scholar 

  177. Tanaka K, Ooki Y, Hatakeyama S, Harada Y, Barr ME (2005) Pleosporales in Japan (5): Pleomassaria, Asteromassaria, and Splanchnonema. Mycoscience 46(4):248–260

    Google Scholar 

  178. Tanaka K, Hirayama K, Yonezawa H, Hatakeyama S, Harada Y, SanoT ST, Hosoya T (2009) Molecular taxonomy of bambusicolous fungi: Tetraplosphaeriaceae, a new pleosporalean family with Tetraploa-like anamorphs, and notes on the phylogeny of selected species from bamboo. Stud Mycol 64:175–209

    CAS  PubMed Central  PubMed  Google Scholar 

  179. Tanaka K, Mel'nik VA, Kamiyama M, Hirayama K, Shirouzu T (2010) Molecular phylogeny of two coelomycetous fungal genera with stellate conidia, Prosthemium and Asterosporium, on Fagales trees. Botany 88:1057–1071

    CAS  Google Scholar 

  180. Taylor JE (2011) One fungus=one name: DNA and fungal nomenclature twenty years after PCR. IMA Fungus 2:113–120

    PubMed Central  PubMed  Google Scholar 

  181. Thambugala KM, Ariyawansa HA, Li YM, Boonmee S, Hongsanan S, Tian Q, Singtripop C, Bhat JD, Camporesi E, Jayawardena R, Liu ZY, Xu JC, Chukeatirote E, Hyde KD (2014a) Dothideales . Fungal Divers 68:105–158

  182. Thambugala KM, Ariyawansa HA, Liu ZY, Chukeatirote E, Hyde KD (2014b) Towards a natural classification of Dothideomycetes 6: The genera Dolabra, Placostromella, Pleosphaerellula, Polysporidiella and Pseudotrichia (Dothideomycetes incertae sedis). Phytotaxa 176(1):55–67

    Google Scholar 

  183. Thambugala KM, Singtripop C, Chunfang Y, Mckenzie EHC, Liu ZY, Chukeatirote E, Hyde KD (2014c) Towards a natural classification of Dothideomycetes 7: The genera Allosoma, Austropleospora, Dangeardiella, Griggsia and Karschia (Dothideomycetes incertae sedis). Phytotaxa 181:34–46

  184. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25(24):4876

    CAS  PubMed Central  PubMed  Google Scholar 

  185. Tian Q, Chomnunti P, Bhat JD, Alias SA, Mortimer PE, Hyde KD (2014) Towards a natural classification of Dothideomycetes 5: The genera Ascostratum, Chaetoscutula, Ceratocarpia, Cystocoleus, and Colensoniella (Dothideomycetes incertae sedis). Phytotaxa 176(1):42–54

    Google Scholar 

  186. Tsang CH, Chan JFW, Trendell-Smith NJ, Ngan AHY, Ling IWH, Lau SKP, Woo PCY (2014) Subcutaneous phaeohyphomycosis in a patient with Ig G4-related sclerosing disease caused by a novel ascomycete, Hongkongmyces pedis gen. et sp. nov.: first report of human infection associated with the family Lindgomycetaceae. Med Mycol 52(7):736–747

    PubMed  Google Scholar 

  187. Tsuneda A, Davey ML, Tsuneda I, Currah RS (2010) Two new dothideomycetous endocoidial genera from declining larch. Botany 88:471–487

    Google Scholar 

  188. Verkley GJM, Priest MJ (2000) Septoria and similar coelomycetous anamorphs of Mycosphaerella. Stud Mycol 45:123–128

    Google Scholar 

  189. Verkley GJM, da Silva M, Wicklow DT, Crous PW (2004) Paraconiothyrium, a new genus to accommodate the mycoparasite Coniothyrium minitans, anamorphs of Paraphaeosphaeria, and four new species. Stud Mycol 50:323–335

    Google Scholar 

  190. Verkley GJM, Quaedvlieg W, Crous PW (2013) A new approach to species delimitation in Septoria. Studies in Mycology 75:213–305

  191. Verkley GJM, Renfurm R, Göker M, Stielow JB (2014) Novel genera and species of coniothyrium-like fungi in Montagnulaceae (Ascomycota). Persoonia 32:25–51

    CAS  PubMed Central  PubMed  Google Scholar 

  192. von Arx JA, Müller E (1975) A re–evaluation of the bitunicate Ascomycetes with keys to families and genera. Stud Mycol 9:1–159

    Google Scholar 

  193. Walker J, Sutton BC (1974) Dilophia Sacc. and Dilophospora Desm. Trans Br Mycol Soc 62(2):231–241

    Google Scholar 

  194. Wanasinghe DN, Jones EBG, Camporesi E, Boonmee S, Karunarathna SC, Thines M, Mortimer PE, Xu J, Hyde KD (2014) Dematiopleospora mariae gen. sp. nov., from Ononis spinosain Italy. Crypto Mycol 35(2):105–117

    Google Scholar 

  195. Wang LY, Lioa HL, Bau HJ, Chung KR (2009) Characterization of pathogenic variants of Elsinoë fawcettii of citrus implies the presence of new pathotypes and cryptic species in Florida. Can J Plant Pathol 31(1):28–37

    Google Scholar 

  196. Wei CZ, Harada Y, Katumoto K (1997) Pseudodidymella fagi gen. et sp. nov. and its hyphomycete anamorph Pycnopleiospora fagi gen. et sp.nov. on Fagus crenata in Japan. Mycologia 89(3):494–502

    Google Scholar 

  197. Wijayawardene DNN, McKenzie EHC, Hyde KD (2012) Towards incorporating anamorphic fungi in a natural classification – checklist and notes for 2011. Mycosphere 3(2):157–228

    Google Scholar 

  198. Wijayawardene NN, Camporesi E, Song Y, Dai DQ, Bhat DJ, Mckenzie EHC, Chukeatirote E, Mel'nik VA, Wang Y, Hyde KD (2013) Multi-gene analyses reveal taxonomic placement of Scolicosporium minkeviciusiiin Phaeosphaeriaceae (Pleosporales). Cryptogam Mycol 34(4):357–366

    Google Scholar 

  199. Wijayawardene NN, Bhat DJ, Hyde KD, Camporesi E, Wikee S, Chethana KWT, Tangthirasunun N, Wang Y (2014a) Camarosporium sensu stricto in Pleosporinae, Pleosporales with two new species. Phytotaxa 183(1):16–26

  200. Wijayawardene NN, Camporesi E, Bhat DJ, Song Y, Chethana KWT, Chukeatirote E, Wang Y, Hyde KD (2014b) Macrodiplodiopsis in Lophiostomataceae, Pleosporales. Phytotaxa 176(1):192–200

  201. Wijayawardene NN, Hyde KD, Bhat DJ, Camporesi E, Schumacher RK, Chethana KWT, Wikee S, Bahkali AH, Wang Y (2014c) Camarosporium-like species are polyphyletic in Pleosporales; introducing Paracamarosporium and Pseudocamarosporium gen. nov. in Montagnulaceae. Cryptogam Mycol 35(2):177–198

    Google Scholar 

  202. Wikee S, Udayanga D, Crous PW, Chukeatirote E, Mckenzie EHC, Bahkali AH, Dai DQ, Hyde KD (2011) Phyllosticta—an overview of current status of species recognition. Fungal Divers 51:43–61

    Google Scholar 

  203. Wikee S, Lombard L, Crous PW, Nakashima C, Motohshi K, Chukeatirote E, Alias SA, McKenzie EHC, Hyde KD (2013a) Phyllosticta capitalensis, a widespread endophyte of plants. Fungal Divers 60:91–105

    Google Scholar 

  204. Wikee S, Lombard L, Nakashima C, Motohashi K, Chukeatirote E, Cheewangkoon R, McKenzie EHC, Hyde KD, Crous PW (2013b) A phylogenetic re-evaluation of Phyllosticta (Botryosphaeriales). Stud Mycol 76:1–29

    CAS  PubMed Central  PubMed  Google Scholar 

  205. Wingfield MJ, De Beer ZW, Slippers B, Wingfield BD, Groenewald JZ, Lombard L, Crous PW (2012) One fungus one name promotes progressive plant pathology. Mol Plant Pathol 13(6):604–613

    CAS  PubMed  Google Scholar 

  206. Winton LM, Stone JK, Hansen EM, Shoemaker RA (2007) The systematic position of Phaeocryptopus gaeumannii. Mycologia 99:240–252

    CAS  PubMed  Google Scholar 

  207. Wolf FA (1935) Morphology of Polythrincium, causing sooty blotch of clover. Mycologia 27:58–73

    Google Scholar 

  208. Woudenberg JHC, Aveskamp MM, de Gruyter J, Spiers AG, Crous PW (2009) Multiple Didymella teleomorphs are linked to the Phoma clematidina morphotype. Persoonia 22:56–62

    CAS  PubMed Central  PubMed  Google Scholar 

  209. Woudenberg JHC, Groenewald JZ, Binder M, Crous PW (2013) Alternaria redefined. Stud Mycol 75:171–212

    CAS  PubMed Central  PubMed  Google Scholar 

  210. Wu W, Sutton BC, Gange AC (1997) Notes on three fungicolous fungi: Anastomyces microsporus gen. et sp. nov., Idriella rhododendri sp. nov. and Infundibura adhaerens. Mycol Res 101(11):1318–1322

    Google Scholar 

  211. Wu HX, Schoch CL, Boonmee S, Bahkali AH, Chomnunti P, Hyde KD (2011) A reappraisal of Microthyriaceae. Fungal Divers 51(1):189–248

  212. Wu X, Tian Q, Li WJ, Hyde KD (2014) A reappraisal of Microthyriaceae. Phytotaxa 176(1):201–212

    Google Scholar 

  213. Wulandari NF, To-Anun C, Lei C, Abd-Elsalam KA, Hyde KD (2010) Guignardia/Phyllosticta species on banana. Cryptogam Mycol 31(4):403–418

    Google Scholar 

  214. Zhang Y, Fournier J, Crous PW, Pointing SB, Hyde KD (2009a) Phylogenetic and morphological assessment of two new species Of Amniculicola and their allies (Pleosporales). Persoonia 23:48–54

    PubMed Central  PubMed  Google Scholar 

  215. Zhang Y, Schoch CL, Fournier J, Crous PW, De Gruyter J, Woudenberg JHC, Hirayama K, Tanaka K, Pointing SB, Hyde KD (2009b) Multi-locus phylogeny of the Pleosporales: a taxonomic, ecological and evolutionary re-evaluation. Stud Mycol 64:85–102

    CAS  PubMed Central  PubMed  Google Scholar 

  216. Zhang M, Koko TW, Hyde KD (2011) Towards a monograph of Dothideomycetes: studies on Diademaceae. Cryptogam Mycol 32:115–126

    Google Scholar 

  217. Zhang H, Hyde KD, McKenzie EHC, Bahkali AH, Zhou D (2012) Sequence data reveals phylogenetic affinities of Acrocalymma aquatica sp. nov., Aquasubmersa mircensis gen. et sp. nov. and Clohesyomyces aquaticus (Freshwater coelomycetes). Cryptogam Mycol 33(3):333–346

    Google Scholar 

  218. Zhaxybayeva O, Gogarten JP (2002) Bootstrap, Bayesian probability and maximum likelihood mapping: exploring new tools for comparative genome analyses. BMC Genomics 3(1):4

    PubMed Central  PubMed  Google Scholar 

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Acknowledgments

We thank Humidtropics, a CGIAR Research Program that aims to develop new opportunities for improved livelihoods in a sustainable environment, for partially funding this work. Plant Germplasm and Genomics Center in Germplasm Bank of Wild Species, Kunming Institute of Botany is appreciated for the help of molecule work. Nalin N. Wijayawardene is indebted to the Mushroom Research Foundation (MRF), Chiang Rai Province, Thailand for providing Postgraduate Scholarship. Kevin D. Hyde thanks the Chinese Academy of Sciences, project number 2013T2S0030, for the award of Visiting Professorship for Senior International Scientists at Kunming Institute of Botany. K.D. Hyde acknowledges a research grant from the Biodiversity Research and Training Program (BRT R253012) and The Thailand Research Fund (BRG 5280002). Yong Wang would like to thank The International Scientific Cooperated Project of Guizhou Province (No[2013] 7004). This contribution was prepared while D.L. Hawksworth was in receipt of funding from the Spanish Ministerio de Ciencia e Innovación project CGL2011-25003.

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In loving memory of Sajith Wijayawardene (09.03.1987-31.05.2014) − you will always be missed as brother and best friend and I cherish the memories we had together – N. N. Wijayawardene

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Wijayawardene, N.N., Crous, P.W., Kirk, P.M. et al. Naming and outline of Dothideomycetes–2014 including proposals for the protection or suppression of generic names. Fungal Diversity 69, 1–55 (2014). https://doi.org/10.1007/s13225-014-0309-2

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Keywords

  • Article 59.1
  • Ascomycota
  • One name
  • Phylogeny
  • Pleomorphism