Abstract
A bacterial strain was isolated from an oil-contaminated site and on its’ further characterization, exhibited the potential of synthesising metabolites and the ability to degrade crude oil. Its’ morphological, biochemical and 16S rRNA analysis suggested that the bacterium belongs to Dietzia maris AURCCBT01. This strain rapidly grew in the medium supplemented with n-alkanes C14, C18, C20, C28 and C32 utilizing them as a sole carbon source and produced a maximum canthaxanthin pigment of 971.37 µg/L in the n-C14 supplemented medium and produced the lowest pigment yield of 389.48 µg/L in the n-C-32 supplemented medium. Moreover, the strain effectively degraded 91.87% of crude oil in 7 days. The emulsification activity of the strain was 25% with the highest cell surface hydrophobicity (70.26%) and it showed a decrease in surface tension, indicating that the biosurfactant production lowers the surface tension. This is the first report on the characterization of the strain, Dietzia maris AURCCBT01 and its’ novelty of alkane degradation and simultaneous production of canthaxanthin pigment.
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Abdulla KJ, Ali SA, Gatea IH, Hameed NA, Maied SK (2019) Biodegradation of crude oil using local bacterial isolates. Ear Env Sci 388:012081
Ahamed F, Dhar K, Ferdouse J, Anwar MN (2014) Effect of salinity on the growth of petroleum hydrocarbons degrading Bacillus sp. isolated from chronically polluted ship breaking yards. Elixir Biotech 68:22280–22283
Al-Hawash AB, Alkooranee JT, Abbood HA, Zhang J, Sun J, Zhang X, Ma F (2018) Isolation and characterization of two crude oil degrading fungal strains from Rumaila oil field. Iraq Biotechnol Rep 17:104–109
Al-Hawash AB, Zhang X, Ma F (2019) Removal and biodegradation of different petroleum hydrocarbons using the filamentous fungus Aspergillus sp. RFC-1. Microbiol 8:e619
Al-Wasify RS, Hamed SR (2014) Bacterial degradation of crude oil using local isolate. Int J Bacteriol. https://doi.org/10.1155/2016/6013871
Bayat Z, Hassanshahian M, Hesni MA (2015) Enrichment and isolation of crude oil degrading bacteria from some mussels collected from Persian Gulf. Mar Pollu Bulle 101:85–91
Bihari Z, Szabo Z, Szvetnik A, Balazs M, Bartos P, Tolmacsov P, Zombori Z, Kiss I (2010) Characterization of a novel long chain n-alkane degrading strain, Dietzia sp. E1. Z Naturforsch 65:693–700
Bihari Z, Szvetnik A, Szabo Z, Blastyak A, Zombori Z, Balazs M (2011) Functional analysis of long-chain n-alkane degradation by Dietzia spp. FEMS Microbio Lett 316:100–107
Bosch MP, Robert M, Mercade ME, Espuny MJ, Parra JL, Guinea J (1988) Surface active compounds on microbial cultures. Tenside Sur Deterg 25:208–212
Brzeszcz J, Kaszycki P (2018) Aerobic bacteria degrading both n-alkanes and aromatic hydrocarbons: an undervalued strategy for metabolic diversity and flexibility. Biodegrad 29:359–407
Chandran P, Das N (2011) Degradation of diesel oil by immobilized Candida tropicalis and bioflm formed on gravels. Biodegradation 22:1181–1189
Chen W, Li J, Sun X, Min J, Hu X (2017) High efficiency degradation of alkanes and crude oil by a salt tolerant bacterium Dietzia species CN-2. Int Biodet Biodegr 118:110–118
Dai X, Yan G, Guo S (2017) Characterization of Dietzia cercidiphylli C-1 isolated from extra heavy oil contaminated soil. RSC ADV 7:19486–19491
Dwivedi A, Chitranshi S, Gupta A, Kumar A, Bhat JL (2019) Assessment of the petroleum oil degradation capacity of indigenous bacterial species isolated from petroleum oil-contaminated soil. Int J Environ Res 13:735–746
Gharibzahedi SMT, Razavi SH, Mousavi SM (2012) Developing an emulsion model system containing canthaxanthin biosynthesized by Dietzia natronolimnaea HS-1. Int J Biol Macromol 51:618–626
Gharibzahedi SMT, Razavi SH, Mousavi M (2013a) Potential applications and emerging trends of species of the genus Dietzia: a review. Ann Microbiol 64:421–429
Gharibzahedi SMT, Razavi SH, Mousavi SM (2013b) Microbial canthaxanthin: perspectives on biochemistry and biotechnological production. Eng Life Sci 13:408–417
Goswami G, Chakraborty S, Chaudhuri S, Dutta D (2012) Optimization of process parameters by response surface methodology and kinetic modeling for batch production of canthaxanthin by Dietzia maris NIT-D (accession number: HM151403). Bioprocess Biosyst Eng 35:1375–1388
Gurav R, Lyu H, Ma J, Tang J, Liu Q, Zhang H (2017) Degradation of n-alkanes and PAHs from the heavy crude oil using salt tolerant bacterial consortia and analysis of their catabolic genes. Environ Sci Pollut Res 24:11392–11403
Gutierrez JA, Teramoto M, Yamazoe A, Harayama S, Figueras A, Novoa, (2011) Alkane degrading properties of Dietzia sp.HB08, a key player in the prestige oil spill biodegradation. J Appl Microbiol 111:800–810
Hamme VJD, Ward OP (2001) Physical and metabolic interactions of Pseudomonas sp. Strain JA5-B45 and Rhodococcus sp. Strain F9–D79 during growth on crude oil and effect of a chemical surfactant on them. Appl Environ Microbiol 67:4874–4879
Hassanshahian M, Tebyanian H, Cappello S (2012) Isolation and characterization of two crude oil degrading yeast strains, Yarrowia lipolytica PG-20 and PG 32, from the Persian Gulf. Mar Pollut Bull 64(7):1386–1391
Ibrahim HMM (2016) Biodegradation of used oil by novel strains of Ochrobactrum anthropic HM-1 and Citrobacter freundii HM-2 isolated from oil-contaminated site. 3Biotech 6:226
Ivshina IB, Kuyukina MS, Krivoruchko AV, Elkin AA, Makarov SO, Cunningham CJ, Peshkur TA, Atlas RM, Philp JC (2015) Oil spill problems and sustainable response strategies through new technologies. Environ Sci Process Impacts 17:1201–1219
Karlapudi AP, Venkateswarulu TC, Tammineedi J, Kanumuri L, Ravuru BK, Dirisala VR, Kodali VP (2018) Role of biosurfactants in bioremediation of oil pollution—a review. Petroleum 4(3):241–249
Kavynifard A, Ebrahimipour G, Ghasempour A (2015) Optimization of crude oil degradation by Dietzia cinnamea KA1, capable of biosurfactant production. J Basic Microbiol 56(5):566–575
Kleindienst S, Paul JH, Joye SB (2015) Using dispersants after oil spills: impacts on the composition and activity of microbial communities. Nat Rev Microbiol 13:388–396
Kumar S, Upadhayay SK, Kumari B, Tiwari S, Singh SN, Singh PK (2011) In vitro degradation of fluoranthene by bacteria isolated from petroleum sludge. Bioresour Technol 102:3709–3715
Lea-Smith DJ, Biller SJ, Davey MP, Cotton CA, Sepulveda BMP, Turchyn AV (2015) Contribution of cyanobacterial alkane production to the ocean hydrocarbon cycle. Proc Natl Acad Sci USA 112:13591–13596
Lin M, Liu YH, Chen WW, Wang H, Hu XK (2014) Use of bacteria-immobilized cotton fibers to absorb and degrade crude oil. Int Biodeter Biodegr 88:8–12
Liu Q, Tang J, Gao K, Gurav R, Giesy JP (2017) Aerobic degradation of crude oil by microorganisms in soils from four geographic regions of China. Sci Rep 7:14856
Luo Q, Zhang JG, Shen XR, Sui X, Fan ZQ (2013) Characterization of a novel diesel oil-degrading Pseudomonas sp. strain F4. Fresenius Environ Bullet 22:689–697
Mezzomo N, Ferreira RS (2016) Carotenoids functionality, sources and processing by supercritical technology: a review. J Chem. https://doi.org/10.1155/2016/3164312
Nazina TN, Sokolova DS, Grigoryan AA, Shestakova NM, Mikhailova EM, Poltaraus AB, Tourova TP, Lysenko AM, Osipov GA, Belyaev SS (2005) Geobacillus jurassicus sp. nov., a new thermophilic bacterium isolated from a high-temperature petroleum reservoir, and the validation of the Geobacillus species. Syst Appl Microbiol 28:43–53
Pacwa-Plociniczak M, Plaza GA, Poliwoda A, Piotrowska-Segat Z (2014) Characterization of hydrocarbon degrading and biosurfactant producing Pseudomonas sp. P-1 strain as a potential tool for bioremediation of petroleum contaminated soil. Enviorn Sci Pollut Res Int 21(15):9385–9395
Parthipan P, Elumalai P, Ting YP, Rahman PKSM, Rajasekar A (2018) Characterization of hydrocarbon degrading bacteria isolated from Indian crude oil reservoir and their influence on biocorrosion of carbon steel API 5LX. Int Biodet Biodeg 129:67–80
Plaza GA, Ulfig K, Brigmon RL (2005) Surface active properties of bacterial strains isolated from petroleum hydrocarbon bioremediated soil. Pol J Microbiol 54(2):161–167
Rahbari-Sisakht M, Pouranfard A, Darvishi P, Ismail AF (2017) Biosurfactant production for enhancing the treatment of produced water and bioremediation of oily sludge under the conditions of Gachsaran oil field. J Chem Technol Biotechnol 92(5):1053–1064
Ravaghi M, Razavi SH, Mousavi SM, Sinico C, Fadda AM (2016) Stabilization of natural canthaxanthin produced by Dietzia natronolimnaea HS-1 by encapsulation of niosomes. LWT 73:498–504
Rezaeeyan Z, Safarpour A, Amoozegar MA, Babavalian H, Tebyanian H, Shakeri F (2017) High carotenoid production by a halotolerant bacterium, Kocuria sp. strain QWT-12 and anticancer activity of its carotenoid. EXCLI J 16:840–851
Rostami F, Razavi SH, Sepahi AA, Gharibzahedi SMT (2014) Canthaxanthin biosynthesis by Dietzia natronolimnaea HS-1: effects of inoculation and aeration rate. Braz J Microbiol 45(2):447–456
Sadighbayan K, Mazaheri Assadi M, Farazmand A, Monadi A, Aliasgharzad N, Mobaiyen H (2016) Biodegradation potential of soils in Tabriz Petroleum Refnery for removing solid polycyclic hydrocarbons Khosrow. Adv Biores 7:57–63
Sakthipriya N, Doble M, Sangwai JS (2015) Fast degradation and viscosity reduction of waxy crude oil and model waxy crude oil using Bacillus subtilis. J Pet Sci Eng 134:158–166
Sarma A, Sarma H (2010) Enhanced biodegradation of oil products by some microbial isolate supplemented with heavy metals. Int J Bot 6:411–448
Sathasivam R, Ki JS (2018) A review of the biological activities of microalgal carotenoids and their potential use in healthcare and cosmetic industries. Mar Drugs 16:26
Sathishkumar M, Binupriya AR, Baik SH, Yun SE (2008) Biodegradation of crude oil by individual bacterial strains and a mixed bacterial consortium isolated from hydrocarbon contaminated areas. Clean Soil Air Water 36:92–96
Shen T, Pi Y, Bao M, Xu N, Li Y, Lu J (2015) Biodegradation of different petroleum hydrocarbons by free and immobilized microbial consortia. Environ Sci Proc Impact 17(12):2022–2033
Sieben VJ, Stickel AJ, Obiosa-Maife C, Rowbotham J, Memon A, Hamed N, Ratulowski J, Mostowfi F (2017) Optical measurement of saturates, aromatics, resins and asphaltenes in crude oil. Energy Fuel 31(4):3684–3697
Thapa B, Kc AK, Ghimire A (2012) A review on bioremediation of petroleum hydrocarbon contaminants in soil. Kathmandu Univ J Sci Eng Technol 8:164–170
Tremblay J, Yergeau E, Fortin N, Cobanli S, Elias M, King TL, Lee K, Greer CW (2017) Chemical dispersants enhance the activity of oil-and gas condensate-degrading marine bacteria. ISME J 11:2793–2808
Varjani SJ, Gnansounou E (2017) Microbial dynamics in petroleum oilfields and their relationship with physiological properties of petroleum oil reservoirs. Bioresour Technol 245:1258–1265
Vijayakumar S, Saravanan V (2015) Biosurfactants-types, sources and applications. Res J Microbiol 10(5):181–192
Wang XB, Chi CQ, Nie Y, Tang YQ, Tan Y, Wu G (2011) Degradation of petroleum hydrocarbons (C6–C40) and crude oil by novel Dietzia strain. Biores Technol 102:7755–7761
Wang Z, Xu Y, Wang HY, Zhao J, Gao DM, Li FM, Xing B (2012) Biodegradation of crude oil in contaminated soils by free and immobilized microorganisms. Pedosphere 22(5):717–725
Wang XB, Nie Y, Tang YQ, Wu G, Wu XL (2013) N-alkane chain length alters Dietzia sp. strain 12–45-1b biosurfactant production and cell surface activity. Appl Environ Microbiol 79:400–402
Weid I, Marques JM, Cunha CD, Lippi RK, Santos S, Rosado AS, Lins U, Seldin L (2007) Identification and biodegradation potential of a novel strain of Dietzia cinnamea isolated from a petroleum contaminated tropical soil. Syst Appl Microbiol 30:331–339
Whang LM, Liu PWG, Ma CC, Cheng SS (2009) Application of rhamnolipid and surfactin for enhanced diesel biodegradation—effects of pH and ammonium addition. J Hazard Mater 164:1045–1050
Xia W, Li J, Xia Y, Song Z, Zhou J (2012) Optimization of diesel oil biodegradation in seawater using statistical experimental methodology. Water Sci Technol 66:1301–1309
Xia W, Dong H, Zheng C, Cui Q, He P, Tang Y (2015) Hydrocarbon degradation by a newly isolated thermophilic Anoxybacillus sp. with bioemulsifer production and new alkB genes. RSC Adv 5:102367–102377
Xia M, Fu D, Chakraborty R, Singh RP, Terry N (2019) Enhanced crude oil depletion by constructed bacterial consortium comprising bioemulsifier producer and petroleum hydrocarbon degraders. Biores Technol 282:456–463
Xu X, Liu W, Tian S, Wang W, Qi Q, Jiang P, Gao X, Li F, Li H, Yu H (2018) Petroleum hydrocarbon degrading bacteria for the remediation of oil pollution under aerobic conditions: a perspective analysis. Front Microbiol 9:2885
Yang Y, Wang J, Liao J, Xie S, Huang Y (2015) Abundance and diversity of soil petroleum hydrocarbon-degrading microbial communities in oil exploring areas. Appl Microbiol Biotechnol 99:1935–1946
Yudono B, Said M, Sabaruddin Napoleon A, Fanani Z (2011) Kinetics approach of biodegradation of petroleum contaminated soil by using indigenous isolated bacteria. J Trop Soils 16:33–38
Zhang J, Zhang X, Liu J, Li R, Shen B (2012) Isolation of a thermophilic bacterium Geobacillus sp. SH-1 capable of degrading aliphatic hydrocarbons and naphthalene simultaneously and identification of its naphthalene degrading pathway. Bioresour Technol 124:83–89
Acknowledgements
Dr. C.K. Venil thanks the UGC for awarding the Dr. D.S. Kothari Postdoctoral Fellowship (BL/17-18/0479). In addition, the authors thank Anna University, Regional Campus—Coimbatore for providing the necessary facilities to carry out the project work.
Funding
This work was supported and funded by the University Grants Commission (UGC), New Delhi under Dr. D.S. Kothari Post-doctoral Fellowship (BL/17-18/0479) dated 25 September 2018.
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Supplementary file1 (JPG 52 KB) (a) Ceric ammonium nitrate test for alcohol. (b) Fehling’s test for aldehyde. (c) Bicarbonate test for acid.
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Venil, C.K., Malathi, M. & Devi, P.R. Characterization of Dietzia maris AURCCBT01 from oil-contaminated soil for biodegradation of crude oil. 3 Biotech 11, 291 (2021). https://doi.org/10.1007/s13205-021-02807-7
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DOI: https://doi.org/10.1007/s13205-021-02807-7