Abstract
The emergence of bacterial resistance due to the indiscriminate use of antibiotics warrants the need for developing new bioactive agents. In this context, antimicrobial peptides are highly useful for managing resistant microbial strains. In this study, we report the isolation and characterization of peptides obtained from the venom of the toadfish Thalassophryne nattereri. These peptides were active against Gram-positive and Gram-negative bacteria and fungi. The primary amino acid sequences showed similarity to Cocaine and Amphetamine Regulated Transcript peptides, and two peptide analogs—Tn CRT2 and Tn CRT3—were designed using the AMPA algorithm based on these sequences. The analogs were subjected to physicochemical analysis and antimicrobial screening and were biologically active at concentrations ranging from 2.1 to 13 µM. Zeta potential analysis showed that the peptide analogs increased the positive charge on the cell surface of Gram-positive and Gram-negative bacteria. The toxicity of Tn CRT2 and Tn CRT3 were analyzed in vitro using a hemolytic assay and tetrazolium salt reduction in fibroblasts and was found to be significant only at high concentrations (up to 40 µM). These results suggest that this methodological approach is appropriate to design novel antimicrobial peptides to fight bacterial infections and represents a new and promising discovery in fish venom.
References
Afacan NJ, Yeung ATY, Pena OM, Hancock REW (2012) Therapeutic potential of host defense peptides in antibiotic-resistant infections. Curr Pharm Des 18:807–819
Altschul SF, Madden TL, Schaffer AA et al (1997) Swiss-Prot Protein Knowledgebase, release 47.3 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402
Atherton E, Sheppard RC (1989) Solid phase peptide synthesis—a practical approach. IRL Press, Oxford
Bailey P, Wilce J (2001) Venom as a source of useful biologically active molecules. Emerg Med 13:28–36. https://doi.org/10.1046/j.1442-2026.2001.00174.x
Bateman A, Martin MJ, O’Donovan C et al (2017) UniProt: the universal protein knowledgebase. Nucleic Acids Res 45:D158–D169. https://doi.org/10.1093/nar/gkw1099
Boman HG (2003) Antibacterial peptides: basic facts and emerging concepts. J Intern Med 254:197–215. https://doi.org/10.1046/j.1365-2796.2003.01228.x
Borges MH, Andrich F, Lemos PH et al (2018) Combined proteomic and functional analysis reveals rich sources of protein diversity in skin mucus and venom from the Scorpaena plumieri fish. J Proteomics 187:200–211. https://doi.org/10.1016/j.jprot.2018.08.002
Bücherl W, Buckley EE, Deulofeu V (1968) (eds) Academic Press, New York, pp xxiv + 707, illus
Campagna S, Saint N, Molle G, Aumelas A (2007) Structure and mechanism of action of the antimicrobial peptide piscidin. Biochemistry 46:1771–1778. https://doi.org/10.1021/bi0620297
Chang KY, Lin TP, Shih LY, Wang CK (2015) Analysis and prediction of the critical regions of antimicrobial peptides based on conditional random fields. PLoS ONE 10:1–16. https://doi.org/10.1371/journal.pone.0119490
Chin DH, Woody RW, Rohl CA, Baldwin RL (2002) Circular dichroism spectra of short, fixed-nucleus alanine helices. Proc Natl Acad Sci USA 99(24):15416–15421
Church JE, Hodgson WC (2002) The pharmacological activity of fish venoms. Toxicon 40:1083–1093. https://doi.org/10.1016/S0041-0101(02)00126-5
Collette BB (2006) A review of the venomous toadfishes, subfamily Thalassophryninae. Copeia 1966:846. https://doi.org/10.2307/1441412
Conceição K, Monteiro-dos-Santos J, Seibert CS et al (2012) Potamotrygon cf. henlei stingray mucus: biochemical features of a novel antimicrobial protein. Toxicon 60:821–829. https://doi.org/10.1016/j.toxicon.2012.05.025
Dennison SR, Phoenix DA (2011) Influence of C-terminal amidation on the efficacy of modelin-5. Biochemistry 50:1514–1523. https://doi.org/10.1021/bi101687t
Di Tommaso P, Torrent M, Boix E et al (2011) AMPA: an automated web server for prediction of protein antimicrobial regions. Bioinformatics 28:130–131. https://doi.org/10.1093/bioinformatics/btr604
Domingues MM, Santiago PS, Castanho MA, Santos NC (2008) What can light scattering spectroscopy do for membrane-active peptide studies? J Pept Sci 14:394–400
Douglass J, Daoud S (1996) Characterization of the human cDNA and genomic DNA encoding CART: a cocaine-and amphetamine-regulated transcript. Gene 169:241–245. https://doi.org/10.1016/0378-1119(96)88651-3
Dziuba B, Dziuba M (2014) New milk protein-derived peptides with potential antimicrobial activity: an approach based on bioinformatic studies. Int J Mol Sci 15:14531–14545. https://doi.org/10.3390/ijms150814531
Gasteiger E, Gattiker A, Hoogland C, Ivanyi I, Appel RD, Bairoch A (2003) ExPASy: The proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res 31:3784–3788
Gaspar D, Salomé Veiga A, Castanho MARB (2013) From antimicrobial to anticancer peptides. A review. Front Microbiol 4:1–16. https://doi.org/10.3389/fmicb.2013.00294
Guex N, Peitsch MC (1997) SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis 18:2714–2723. https://doi.org/10.1002/elps.1150181505
Hancock REW, Rozek A (2002) Role of membranes in the activities of antimicrobial cationic peptides. FEMS Microbiol Lett 206:143–149. https://doi.org/10.1016/S0378-1097(01)00480-3
Harris F, Dennison S, Phoenix D (2009) Anionic antimicrobial peptides from eukaryotic organisms. Curr Protein Pept Sci 10:585–606. https://doi.org/10.2174/138920309789630589
Hilpert K, Volkmer-Engert R, Walter T, Hancock REW (2005) High-throughput generation of small antibacterial peptides with improved activity. Nat Biotechnol 23:1008–1012. https://doi.org/10.1038/nbt1113
Hoskin DW, Ramamoorthy A (2008) Studies on anticancer activities of antimicrobial peptides. Biochim Biophys Acta Biomembr 1778:357–375. https://doi.org/10.1016/j.bbamem.2007.11.008
Houyvet B, Bouchon-Navaro Y, Bouchon C et al (2018) Identification of a moronecidin-like antimicrobial peptide in the venomous fish Pterois volitans: functional and structural study of pteroicidin-α. Fish Shellfish Immunol 72:318–324. https://doi.org/10.1016/j.fsi.2017.11.003
Joo HS, Fu CI, Otto M (2016) Bacterial strategies of resistance to antimicrobial peptides. Philos Trans R Soc B Biol Sci. https://doi.org/10.1098/rstb.2015.0292
Khrapunov S (2009) Circular dichroism spectroscopy has intrinsic limitations for protein secondary structure analysis. Anal Biochem 389:174–176
Kyte J, Doolittle RF (1982) A simple method for displaying the hydropathic character of a protein. J Mol Biol 157:105–132. https://doi.org/10.1016/0022-2836(82)90515-0
Liu S, Bao J, Lao X, Zheng H (2018) Novel 3D structure based model for activity prediction and design of antimicrobial peptides. Sci Rep 25:11189. https://doi.org/10.1038/s41598-018-29566-5
Lopes-Ferreira M, Barbaro KC, Cardoso DF et al (1998) Thalassophryne nattereri fish venom: Biological and biochemical characterixation and serum neutralization of its toxic activities. Toxicon 36:405–410. https://doi.org/10.1016/S0041-0101(97)00115-3
Lopes-Ferreira M, Emim JADS, Oliveira V et al (2004) Kininogenase activity of Thalassophryne nattereri fish venom. Biochem Pharmacol 68:2151–2157. https://doi.org/10.1016/j.bcp.2004.07.037
Lopes-Ferreira M, Grund LZ, Lima C (2014) Thalassophryne nattereri fish venom: from the envenoming to the understanding of the immune system. J Venom Anim Toxins Incl Trop Dis 20:1–12. https://doi.org/10.1186/1678-9199-20-35
Luong HX, Kim DH, Lee BJ, Kim YW (2017) Antimicrobial activity and stability of stapled helices of polybia-MP1. Arch Pharm Res 40:1414–1419. https://doi.org/10.1007/s12272-017-0963-5
Magalhães GS, Junqueira-de-Azevedo IL, Lopes-Ferreira M, Lorenzini DM, Ho PL, Moura-da-Silva AM (2006) Transcriptome analysis of expressed sequence tags from the venom glands of the fish Thalassophryne nattereri. Biochimie 88:693–699
Manning MC, Woody RW (1991) Theoretical CD studies of polypeptide helices: examination of important electronic and geometric factors. Biopolymers 31:569–586
Mathur S, Hoskins C (2017) Drug development: lessons from nature. Biomed Rep 6:612–614. https://doi.org/10.3892/br.2017.909
Micsonai A, Wien F, Bulyáki É, Kun J, Moussong É, Lee YH, Goto Y, Réfrégiers M, Kardos J (2018) BeStSel: a web server for accurate protein secondary structure prediction and fold recognition from the circular dichroism spectra. Nucleic Acids Res 46:W315–W322. https://doi.org/10.1093/nar/gky497
Moreira JT, de Souza AO, Nunes GLC et al (2012) Unraveling the antifungal activity of a South American rattlesnake toxin crotamine. Biochimie 95:231–240. https://doi.org/10.1016/j.biochi.2012.09.019
Mura M, Wang J, Zhou Y, Pinna M, Zvelindovsky AV, Dennison SR, Phoenix DA (2016) The effect of amidation on the behaviour of antimicrobial peptides. Eur Biophys J 45:195–207
Nguyen LT, Haney EF, Vogel HJ (2011) The expanding scope of antimicrobial peptide structures and their modes of action. Trends Biotechnol 29:464–472. https://doi.org/10.1016/j.tibtech.2011.05.001
Pan C-Y, Yu CY, Chen J-Y et al (2015) The antimicrobial peptide pardaxin exerts potent anti-tumor activity against canine perianal gland adenoma. Oncotarget. https://doi.org/10.18632/oncotarget.2959
Paul TJT, Asif MK, Vladimir B (2003) Bioinformatics for venom and toxin sciences. Brief Bioinform 4:53–62. https://doi.org/10.1093/bib/4.1.53
Pettersen EF, Goddard TD, Huang CC et al (2004) UCSF Chimera—a visualization system for exploratory research and analysis. J Comput Chem 25:1605–1612. https://doi.org/10.1002/jcc.20084
Pfaller MA, Haturvedi V, Espinel-Ingroff A et al (2002) Reference method for broth dilution antifungal susceptibility testing of yeasts ; approved standard, 2nd edn. Serving the World ’ s Medical Science Community Through Voluntary Consensus
Powers JPS, Hancock REW (2003) The relationship between peptide structure and antibacterial activity. Peptides 24:1681–1691. https://doi.org/10.1016/j.peptides.2003.08.023
Primon-Barros M, José Macedo A (2017) Animal venom peptides: potential for new antimicrobial agents. Curr Top Med Chem 17:1119–1156
Pushpanathan M, Jayachandran S, Jayashree S et al (2012) Identification of a novel antifungal peptide with chitin-binding property from marine metagenome. Protein Pept Lett 19:1289–1296. https://doi.org/10.2174/092986612803521620
Reid WV et al (1993) Using genetic resources for sustainable development
Robinson SD, Undheim EAB, Ueberheide B, King GF (2017) Venom peptides as therapeutics: advances, challenges and the future of venom-peptide discovery. Expert Rev Proteomics 14:931–939. https://doi.org/10.1080/14789450.2017.1377613
Roy A, Kucukural A, Zhang Y (2010) I-TASSER: a unified platform for automated protein structure and function prediction. Nat Protoc 5:725–738. https://doi.org/10.1038/nprot.2010.5
Shen Y, Maupetit J, Derreumaux P, Tufféry P (2014) Improved PEP-FOLD approach for peptide and miniprotein structure prediction. J Chem Theory Comput 10:4745–4758. https://doi.org/10.1021/ct500592m
Sievers F, Higgins DG (2014) Clustal Omega. Curr Protoc Bioinf. https://doi.org/10.1002/0471250953.bi0313s48
Silva ON, Franco OL, de Carvalho MJA et al (2012) Predicting antimicrobial peptides from eukaryotic genomes: in silico strategies to develop antibiotics. Peptides 37:301–308. https://doi.org/10.1016/j.peptides.2012.07.021
Spencer P, Juliano L, Junqueira de Azevedo I et al (2005) Natterins, a new class of proteins with kininogenase activity characterized from fish venom. Biochimie 87:687–699. https://doi.org/10.1016/j.biochi.2005.03.016
Stocklin R, Menin L, Bulet P (2004) Anti-microbial peptides: from invertebrates to vertebrates. Immunol Rev 198:169–184
Taheri B, MohammadiI M, Nabipour I et al (2018) Identification of novel antimicrobial peptide from Asian sea bass (Lates calcarifer) by in silico and activity characterization. PLoS ONE 13:1–22. https://doi.org/10.1371/journal.pone.0206578
Takahashi D, Shukla SK, Prakash O, Zhang G (2010) Structural determinants of host defense peptides for antimicrobial activity and target cell selectivity. Biochimie 92:1236–1241. https://doi.org/10.1016/j.biochi.2010.02.023
The HAS, Bullet M, The HIT, Bullet M (2002) Nunes-Correia, Ramalho-Santos, Pedroso de Lima—1998—Sendai virus fusion activity as modulated by target membrane components. 25:1–10
Thennarasu S, Nagaraj R (2007) Specific antimicrobial and hemolytic activities of 18-residue peptides derived from the amino terminal region of the toxin pardaxin. Protein Eng Des Sel 9:1219–1224. https://doi.org/10.1093/protein/9.12.1219
Thim L, Nielsen PF, Judge ME et al (1998) Purification and characterisation of a new hypothalamic satiety peptide, cocaine and amphetamine regulated transcript (CART), produced in yeast. FEBS Lett 428:263–268. https://doi.org/10.1016/S0014-5793(98)00543-2
Torcato IM, Huang YH, Franquelim HG et al (2013) The antimicrobial activity of sub3 is dependent on membrane binding and cell-penetrating ability. ChemBioChem 14:2013–2022. https://doi.org/10.1002/cbic.201300274
Torrent M, Nogués VM, Boix E (2009) A theoretical approach to spot active regions in antimicrobial proteins. BMC Bioinform 10:1–9. https://doi.org/10.1186/1471-2105-10-373
Torrent M, Pulido D, De La Torre BG et al (2011) Refining the eosinophil cationic protein antibacterial pharmacophore by rational structure minimization. J Med Chem 54:5237–5244. https://doi.org/10.1021/jm200701g
Torres-Rêgo M, Machado RJA, Carvalho E et al (2016) Characterization of TistH, a multifunctional peptide from the scorpion Tityus stigmurus: structure, cytotoxicity and antimicrobial activity. Toxicon 119:362–370. https://doi.org/10.1016/j.toxicon.2016.06.002
Usmani SS, Bedi G, Samuel JS et al (2017) THPdb: database of FDA-approved peptide and protein therapeutics. PLoS ONE 12:1–12. https://doi.org/10.1371/journal.pone.0181748
Wimley WC, Hristova K (2011) Antimicrobial peptides: successes, challenges and unanswered questions. J Membr Biol 239:27–34. https://doi.org/10.1007/s00232-011-9343-0
Xie B, Huang Y, Baumann K, Fry B, Shi Q (2017) From marine venoms to drugs: efficiently supported by a combination of transcriptomics and proteomics. Mar Drugs 15:103. https://doi.org/10.3390/md15040103
Zambelli VO, Pasqualoto KFM, Picolo G et al (2016) Harnessing the knowledge of animal toxins to generate drugs. Pharmacol Res 112:30–36. https://doi.org/10.1016/j.phrs.2016.01.009
Ziegman R, Alewood P (2015) Bioactive components in fish venoms. Toxins (Basel) 7:1497–1531. https://doi.org/10.3390/toxins7051497
Acknowledgements
This research was supported by FAPESP grant No. 2017/00032-0. In addition to funding, we acknowledge Ana Cruz for technical help on CD experiments and Carlos Eduardo Silva da Cruz for English revision.
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KC participated in the study design, conducted analysis and manuscript preparation; VAS, VMA and GLC participated in the execution of antimicrobial, in silico experiments, data analysis and manuscript preparation; XAON performed the HPLC purification and mass analysis; SAC synthesized the peptides; MR performed Edman sequencing; SAD and MARBC participated in the execution of biophysical experiments; MLF collected venom and designed experiments.
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Conceição, K., de Cena, G.L., da Silva, V.A. et al. Design of bioactive peptides derived from CART sequence isolated from the toadfish Thalassophryne nattereri. 3 Biotech 10, 162 (2020). https://doi.org/10.1007/s13205-020-2151-4
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DOI: https://doi.org/10.1007/s13205-020-2151-4