Skip to main content
Log in

Genetic relationships among Iranian and exotic safflower using microsatellite markers

  • Research Article
  • Published:
Journal of Crop Science and Biotechnology Aims and scope Submit manuscript

Abstract

Safflower (Carthamus tinctorius L.) is mainly grown as an oil seed crop in the semiarid and temperate regions of the world. In this study, microsatellite markers were used to evaluate and characterize genetic relationships among 20 safflower genotypes including six Iranian and 14 exotic ones. Nine primer pairs generated clear scoring bands and yielded 22 alleles ranging from 100 to 400 bp with 2-4 alleles per locus. Polymorphic information content (PIC) values ranged from 0.11 to 0.62 with an average of 0.33. The Dice similarity coefficients among the genotypes ranged from 0.06 (between Soviet Union 2 and USA) to 0.95 (between Local Isfahan and Indian 2), indicating a relatively high genetic variation among the safflower genotypes studied. Both cluster and principal components analysis (PCA) clearly classified safflower genotypes into four groups. Results indicated that in most cases safflower genotypes were divided into the groups consistent with their country of origin. Clustering some foreign genotypes into the Iranian group was due to their similar genetic basis and it was suggested that Iran may be the origin of these. The findings suggested that microsatellite markers could be efficiently utilized to assess genetic diversity and relationships among safflower genotypes.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

Explore related subjects

Discover the latest articles and news from researchers in related subjects, suggested using machine learning.

References

  • Amini F, Saeidi G, Arzani A. 2008. Study of genetic diversity in safflower genotypes using agro-morphological traits and RAPD markers. Euphytica 163: 21–30.

    Article  CAS  Google Scholar 

  • Ash G, Raman R, Crump N. 2003. An investigation of genetic variation in Carthamus lanatus in New South Wales, Australia, using intersimple sequence repeats (ISSR) analysis. Weed Res. 43: 208–21.

    Article  CAS  Google Scholar 

  • Ashri A. 1975. Evaluation of the germ plasm collection of safflower, Carthamus tinctorius LV Distribution and regional divergence for morphological characters. Euphytica 24: 651–659.

    Article  Google Scholar 

  • Bahmankar M, Nabati DA, Dehdari M. 2016. Genetic variation and phylogenetic relationships of safflower using morpho-phenological markers. Electronic J. Biol. S1: 7–12.

    Google Scholar 

  • Barati M, Arzani A. 2012. Genetic diversity revealed by EST-SSR markers in cultivated and wild safflower. Biochem. Syst. Ecol. 44: 117–123.

    Article  CAS  Google Scholar 

  • Botstein D, White RL, Skolnick M, Davis RW. 1980. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am. J. Hum. Genet. 32: 314.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Bowles VG, Mayerhofer R, Davis C, Good AG, Hall JC. 2010. A phylogenetic investigation of Carthamus combining sequence and microsatellite data. Plant Syst. Evol. 287: 85–97.

    Article  CAS  Google Scholar 

  • Creste S, Tulmann Neto A, Figueria A. 2001. Detection of single sequence repeat polymorphisms in denaturing polyacrylamide sequencing gels by silver staining. Plant Mol. Biol. Rep. 19: 299–306.

    Article  CAS  Google Scholar 

  • Derakhshan E, Majidi MM, Sharafi Y, Mirlohi A. 2014. Discrimination and genetic diversity of cultivated and wild safflowers (Carthamus spp.) using EST-microsatellites markers. Biochem. Syst. Ecol. 54: 130–136.

    Article  CAS  Google Scholar 

  • Ganesan SK, Singh R, Roy Choudhury D, Bharadwaj J, Gupta V, Singode A. 2014. Genetic diversity and population structure study of drumstick (Moringa oleifera Lam.) using morphological and SSR markers. Ind. Crops Prod. 60: 316–325.

    Article  CAS  Google Scholar 

  • Golkar P, Arzani A, Rezaei AM. 2011. Genetic variation in safflower (Carthamus tinctorious L.) for seed quality-related traits and inter-simple sequence repeat (ISSR) markers. Int. J. Mol. Sci. 12: 2664–2677.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hamdan Y, García-Moreno MJ, Redondo-Nevado J, Velasco L, Perez-Vich B. 2011. Development and characterization of genomic microsatellite markers in safflower (Carthamus tinctorius L.). Plant Breed. 130: 237–241.

    Article  CAS  Google Scholar 

  • Jaradat A, Shahid M. 2006. Patterns of phenotypic variation in a germplasm collection of Carthamus tinctorius L. from the Middle East. Genet. Resour. Crop Evol. 53: 225–244.

    Article  Google Scholar 

  • Johnson RC, Kisha T, Evans M. 2007. Characterizing safflower germplasm with AFLP molecular markers. Crop Sci. 47: 1728–1736.

    Article  CAS  Google Scholar 

  • Karp A, Kresovich S, Bhat KV, Ayad WG, Hodgkin T. 1997. Molecular tools in plant genetic resources conservation: a guide to the technologies IPGRI Tech. Bull. No. 2. International Plant Genetic Resources Institute, Rome, Italy.

    Google Scholar 

  • Khan MA, von Witzke-Ehbrecht S, Maass BL, Becke, HC. 2009. Relationships among different geographical groups, agro-morphology, fatty acid composition and RAPD marker diversity in safflower (Carthamus tinctorius). Genet. Resour. Crop Evol. 56: 19–30.

    Article  CAS  Google Scholar 

  • La Rota M, Kantety RV, Yu J-K, Sorrells ME. 2005. Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley. BMC Genomics 6: 1–12.

    Article  Google Scholar 

  • Lee GA, Sung JS, Lee SY, Chung JW, Yi JY, Kim YG, Lee MC. 2014. Genetic assessment of safflower (Carthamus tinctorius L.) collection with microsatellite markers acquired via pyrosequencing method. Mol. Ecol. Res., 14: 69–78.

    Article  CAS  Google Scholar 

  • Li P, Wang Y, Chen Y, Zhang S. 2009. Genetic diversity and association of ISSR markers with the eleostearic content in tung tree (Vernicia fordii). Afr. J. Biotechnol. 4782–4788.

    Google Scholar 

  • Mahasi M, Wachira F, Pathak R, Riungu T. 2009. Genetic polymorphism in exotic safflower (Carthamus tinctorius L.) using RAPD markers. J. Plant Breed. Crop Sci. 1: 8–12.

    CAS  Google Scholar 

  • Melchinger A, Boppenmaier J, Dhillon B, Pollmer W, Herrmann R. 1992. Genetic diversity for RFLPs in European maize inbreds. Theor. Appl. Genet. 84: 672–681

    CAS  PubMed  Google Scholar 

  • Melchinger AE. 1993. Use of RFLP Markers for Analysis of Genetic Relationships Among Breeding Materials and Prediction of Hybrid Performance, In DR Buxton, R Shibles, RA Forsberg, BL Blad, KH Asay, GM Paulsen, RF Wilson, Eds, International Crop Science I. Crop Science Society of America, pp. 621–628.

    Google Scholar 

  • Mohammadi S. 2006. Analysis of molecular data from perspective of genetic diversity, 9th Iranian crop science congress, college Abureyhan Campus-University of Tehran, Tehran, Iran, pp. 96–119.

    Google Scholar 

  • Mohammadi S, Prasanna B. 2003. Analysis of genetic diversity in crop plants-salient statistical tools and considerations. Crop Sci. 43: 1235–1248.

    Article  Google Scholar 

  • Naresh V, Yamini K, Rajendrakumar P, Kumar VD. 2009. EST-SSR marker-based assay for the genetic purity assessment of safflower hybrids. Euphytica 170: 347–353.

    Article  CAS  Google Scholar 

  • Yang Y-X, Wu W, Zheng Y-L, Chen L, Liu R-J, Huang C-Y. 2007. Genetic diversity and relationships among safflower (Carthamus tinctorius L.) analyzed by inter-simple sequence repeats (ISSRs). Genet. Resour. Crop Evol. 54: 1043–1051.

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Moslem Bahmankar.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Bahmankar, M., Nabati, D.A. & Dehdari, M. Genetic relationships among Iranian and exotic safflower using microsatellite markers. J. Crop Sci. Biotechnol. 20, 159–165 (2017). https://doi.org/10.1007/s12892-017-0001-0

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12892-017-0001-0

Keywords