Development and characterization of 26 SNP markers in Nipponacmea schrenckii
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In this study, 26 single nucleotide polymorphism (SNP) markers were developed and characterized in Nipponacmea schrenckii. The minor allele frequency raged from 0.0238 to 0.3571. The observed heterozygosity and expected heterozygosity ranged from 0.0000 to 0.2381 and from 0.0929 to 0.4866, respectively. Polymorphic information content ranged from 0.0866 to 0.3538. The inbreeding coefficient values varied from − 0.0582 to 0.9985. Four loci showed significant deviations from the Hardy–Weinberg equilibrium (P < 0.01). The polymorphic SNPs will be helpful for the further population genetic analysis and natural resource conservation of N. schrenckii.
KeywordsNipponacmea schrenckii SNP markers Population genetic diversity
This work was supported by National Natural Science Foundation of China (No.: 31460562), the Key Research Program of Yantai (SM17SK04, SM17SK09), and the Doctoral Science Research Foundation of Yantai University (SM15B01).