Advertisement

Conservation Genetics Resources

, Volume 11, Issue 1, pp 23–26 | Cite as

Complete mitochondrial genome sequence of Patagonian blenny, Eleginops maclovinus (Perciformes: Eleginopidae) with phylogenetic consideration

  • Manuel Lee-Estevez
  • Giovanni Larama
  • Elías Figueroa
  • Patricio Ulloa-Rodríguez
  • Rommy Díaz
  • Iván Valdebenito
  • Jorge G. FaríasEmail author
Technical Note
  • 202 Downloads

Abstract

Patagonian blenny (Eleginops maclovinus) is the only member of Eleginopidae family. It has been an important resource for Chilean artisanal fishermen communities, however, capture volumes have progressively decreased over last decades likely because overfishing, and concerns for conservation of this species have rised. In this work, mitochondrial DNA of E. maclovinus was fully sequenced using NGS technology. The mitochondrial genome is 16,960 bp long, showing high similarity with other Antarctic fishes. Phylogenetic analysis showed E. maclovinus closer to Nototheniidae and Channichthyidae families within Notothenioidei suborder. As conclusion, we obtained and described the complete mitogenome from E. maclovinus, which constitute a valuable and useful resource for population genetic study and monitoring, as well as for further conservation efforts on this species.

Keywords

Patagonian blenny Eleginops maclovinus Mitochondrial DNA Sequence Phylogenetic analysis 

Notes

Acknowledgements

This work was financially supported by FONDECYT Project No. 1151315 (JGF), FONDECYT Postdoctoral project No. 3160572 (RD) and CONICYT National Doctorate Scholarships (MLE, EF, PUR). This research was also supported by the supercomputing infrastructure of NLHPC (ECM-02) at Centro de Excelencia de Modelación y Computación Científica of Universidad de La Frontera. Special thanks to Dr. Silvana Bravo and Ms. Stefanía E. Short for their technical assistance. The datasets used and/or analysed during the current study are available from the corresponding author on reasonable request.

References

  1. Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF (2013) MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol 69(2):313–319CrossRefPubMedGoogle Scholar
  2. Chen Y, Cheng Q, Qiao H, Zhu Y, Chen W (2013) The complete mitochondrial genome sequence of Rastrelliger kanagurta (Perciformes: Scombridae). Mitochondrial DNA 24(2):114–116CrossRefPubMedGoogle Scholar
  3. He A, Luo Y, Yang H, Liu L, Li S, Wang C (2011) Complete mitochondrial DNA sequences of the Nile tilapia (Oreochromis niloticus) and Blue tilapia (Oreochromis aureus): genome characterization and phylogeny applications. Mol Biol Rep 38(3):2015–2021CrossRefPubMedGoogle Scholar
  4. Lee J, Lee H, Lee J, Choi J, Park H (2015) Complete mitochondrial genome of the Antarctic silverfish, Pleuragramma antarcticum (Perciformes, Nototheniidae). Mitochondrial DNA 26(6):885–886CrossRefPubMedGoogle Scholar
  5. Licandeo R, Barrientos C, González M (2006) Age, growth rates, sex change and feeding habits of notothenioid fish Eleginops maclovinus from the central-southern Chilean coast. Environ Biol Fishes 77:51–61CrossRefGoogle Scholar
  6. Liu Y, Yang M, Zhou T, Xing H, Chen L, Zhang D (2016) Complete mitochondrial genome of the Antarctic cod icefish, Pagothenia borchgrevinki (Perciformes: Nototheniidae). Mitochondrial DNA Part B 1(1):432–433CrossRefGoogle Scholar
  7. Luo R, Liu B, Xie Y, Li Z, Huang W, Yuan J et al (2012) SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience 1(1):1–18CrossRefGoogle Scholar
  8. Miya M, Takeshima H, Endo H, Ishiguro NB, Inoue JG, Mukai T, Satoh TP, Yamaguchi M, Kawaguchi A, Mabuchi K, Shirai SM, Nishida M (2003) Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences. Mol Phylogenet Evol 26(1):121–138CrossRefPubMedGoogle Scholar
  9. Near T, Pesavento J, Cheng CHC (2004) Phylogenetic investigations of Antarctic notothenioid fishes (Perciformes: Notothenioidei) using complete gene sequences of the mitochondrial encoded 16S rRNA. Mol Phylogenet Evol 32:881–891CrossRefPubMedGoogle Scholar
  10. Nelson JS (2006) Fishes of the world, 4th edn. Wiley, New York, p. 401Google Scholar
  11. Oh JS, Ahn do H, Lee J, Choi J, Chi YM, Park H (2016) Complete mitochondrial genome of the Antarctic bullhead notothen, Notothenia coriiceps (Perciformes, Nototheniidae). Mitochondrial DNA A DNA Mapp Seq Anal 27(2):1407–1408CrossRefPubMedGoogle Scholar
  12. Papetti C, Lio P, Rüber L, Patarnello T (2007) Zardoya R. Antarctic fish mitochondrial genomes lack ND6 gene. J Mol Evol 65:519–528CrossRefPubMedGoogle Scholar
  13. Pequeño G, Olivera F (2005) Peces litorales de Chile objeto de la pesca: primer análisis de conjunto o ¿Hay en la pesquería artesanal una amenaza a la biodiversidad ictiofaunística, que ha sido humanamente imperceptible e incalculable? In: Figueroa E (ed) Biodiversidad Marina. Valoración, Usos y Perspectivas ¿Hacia dónde va Chile? Ediciones Universitaria, Santiago, pp 507–537Google Scholar
  14. Prosdocimi F, Cardoso de Carvalho D, Nascimento de Almeida R, Beheregaray LB (2012) The complete mitochondrial genome of two recently derived species of the fish genus Nannoperca (Perciformes, Percichthyidae). Mol Biol Rep 39(3):2767–2772CrossRefPubMedGoogle Scholar
  15. Quiñones RA, Montes RM (2001) Relationship between freshwater input to the coastal zone and the historical landings of the benthic/demersal fish Eleginops maclovinus in central-south Chile. Fish Oceanogr 10(4):311–328CrossRefGoogle Scholar
  16. Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19(12):1572–1574CrossRefPubMedGoogle Scholar
  17. Sievers F, Wilm A, Dineen DG, Gibson TJ, Karplus K, Li W, Lopez R, McWilliam H, Remmert M, Söding J, Thompson JD, Higgins D (2011) Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol Syst Biol 7:539.  https://doi.org/10.1038/msb.2011.75 CrossRefPubMedPubMedCentralGoogle Scholar
  18. Song W, Li L, Huang H, Meng Y, Jiang K, Zhang F, Chen X, Ma L (2016) The complete mitochondrial genome of Chionodraco hamatus (Notothenioidei: Channichthyidae) with phylogenetic consideration. Mitochondrial DNA Part B 1(1):52–53CrossRefGoogle Scholar
  19. Wang M, Zhong L, Bian W, Qin Q, Chen X (2016) Complete mitochondrial genome of paradise fish Macropodus opercularis (Perciformes: Macropodusinae). Mitochondrial DNA A DNA Mapp Seq Anal 27(6):4146–4148PubMedGoogle Scholar
  20. Zhuang X, Cheng CHC (2010) ND6 gene “lost” and found: evolution of mitochondrial gene rearrangement in antarctic notothenioids. Mol Biol Evol 27(6):1391–1403CrossRefPubMedGoogle Scholar

Copyright information

© Springer Science+Business Media B.V., part of Springer Nature 2017

Authors and Affiliations

  1. 1.Department of Chemical EngineeringUniversidad de La FronteraTemucoChile
  2. 2.Departamento de Ingeniería MatemáticaUniversidad de La FronteraTemucoChile
  3. 3.Centro de Excelencia de Modelación y Computación CientíficaUniversidad de La FronteraTemucoChile
  4. 4.School of AquacultureCatholic University of TemucoTemucoChile

Personalised recommendations