Skip to main content

Advertisement

Log in

The complete chloroplast genome sequence of an endangered Orchidaceae species Dendrobium monilforme and its phylogenetic implications

  • Technical Note
  • Published:
Conservation Genetics Resources Aims and scope Submit manuscript

Abstract

Dendrobium monilforme is an endangered Orchidaceae species distributed in Southwest China. Here we report the complete chloroplast (cp) genome sequence and the cp genomic features of D. monilforme. The genome is 152,136 bp long with 129 genes comprising 83 protein-coding genes, 40 tRNA genes and six rRNA genes. Most of the genes occurred in a single copy, while 18 occurred in two copies. Phylogenetic analysis of a data set of six cp genomes indicated that D. monilforme is closely related to other species in the genus Dendrobium.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

References

  • Asahina H, Shinozaki J, Masuda K, Morimitsu Y, Satake M (2010) Identification of medicinal Dendrobium species by phylogenetic analyses using matK and rbcL sequences. J Nat Med 64:133–138

    Article  PubMed  CAS  Google Scholar 

  • Bulpitt CJ, Li Y, Bulpitt PF, Wang J (2007) The use of orchids in Chinese medicine. J R Soc Med 100:558–563

    Article  PubMed  PubMed Central  Google Scholar 

  • Halberstein RA (2005) Medicinal plants: historical and cross-cultural usage patterns. Ann Epidemiol 15:686–699

    Article  PubMed  Google Scholar 

  • Lau D.T.W., Shaw PC, Wang J, But P.P.H. (2001) Authentication of medicinal Dendrobium species by the internal transcribed spacer of ribosomal DNA. Planta Med 67:456–460

    Article  PubMed  CAS  Google Scholar 

  • Nock CJ, Waters DL, Edwards MA, Bowen SG, Rice N, Cordeiro GM, Henry RJ (2011) Chloroplast genome sequences from total DNA for plant identification. Plant Biotechnol 9:328–333

    Article  CAS  Google Scholar 

  • Shoemaker M, Hamilton B, Dairkee SH, Cohen I, Campbell MJ (2005) In vitro anticancer activity of twelve Chinese medicinal herbs. Phytother Res 19:649–651

    Article  PubMed  Google Scholar 

  • Tsi ZH (1999) Flora of China. Science Press, Beijing (Chinese edition)

    Google Scholar 

  • Wojcikowski K, Gobe G (2014) Animal studies on medicinal herbs: predictability, dose conversion and potential value. Phytother Res 28:22–27

    Article  PubMed  Google Scholar 

  • Wyman SK, Jansen RK, Boore JL (2004) Automatic annotation of organellar genomes with dogma. Bioinformatics 20(17):3252–3255

    Article  PubMed  CAS  Google Scholar 

  • Xiang XG, Hu H, Wang W, Jin XH (2011) DNA barcoding of the recently evolved genus Holcoglossum (Orchidaceae: Aeridinae): a test of DNA barcode candidates. Mol Ecol Resour 11:1012–1021

    Article  PubMed  Google Scholar 

  • Ye M, Hou B, Luo J, Yan W, Liu W, Ding X (2015) Genetic diversity and conservation of the endangered herb Dendrobium moniliforme based on amplified fragment length polymorphism markers. Sci Hortic 189:51–58

    Article  CAS  Google Scholar 

  • Yukawa TA, Kurokawa M, Sato H, Yoshida Y, Kageyama S, Hasegawa T, Namba T, Imakita M, Hozumi T, Shiraki K (1996) Prophylactic treatment of cytomegalovirus infection with traditional herbs. Antiviral Res 32:63–70

    Article  PubMed  CAS  Google Scholar 

  • Zhang YB, Wang J, Wang ZT, But P.P.H., Shaw PC (2003) DNA microarray for identification of the herb of Dendrobium species from Chinese medicinal formulations. Planta Med 69:1172–1174

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Yan-xia Gao or Shi-gang Shen.

Ethics declarations

Conflict of interest

The authors report no conflicts of interest.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Gao, Yx., Zhou, Yy., Xie, Y. et al. The complete chloroplast genome sequence of an endangered Orchidaceae species Dendrobium monilforme and its phylogenetic implications. Conservation Genet Resour 10, 397–399 (2018). https://doi.org/10.1007/s12686-017-0834-x

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12686-017-0834-x

Keywords

Navigation