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Conservation Genetics Resources

, Volume 10, Issue 1, pp 103–106 | Cite as

The complete chloroplast genome of Daphne kiusiana, an evergreen broad-leaved shrub on Jeju Island

  • Won-Bum Cho
  • Eun-Kyeong Han
  • Goya Choi
  • Jung-Hyun LeeEmail author
Technical Note

Abstract

Plants of Daphne kiusiana on Jeju Island exhibit morphologically and genetically unique traits. Its taxonomic entity is still unclear and populations are decreasing in size because of human activity. Taxonomic delimitation and conservation efforts are required at the genomic level. We determined the complete chloroplast (cp) genome of this endangered species on Jeju Island, South Korea. Its sequence is 171,491 bp long, and comprises a pair of 41,891 bp inverted repeats, a large-single-copy (LSC) region (85,028 bp), and a diminished small-single-copy region (2681 bp). The cp genome has 135 genes, including 89 that encode proteins, plus 38 tRNAs, and eight rRNAs. Five genes (rpl32, ndhF, accD, clpP, and ndhK) are pseudogenized or lost in its cpDNA. When compared with that of a related species, Aquilaria sinensis, its LSC region contains a large inversion event between rbcL and rps12 that caused pseudogenization of clpP and accD.

Keywords

Chloroplast genome Conservation Daphne kiusiana Jeju Island 

Notes

Acknowledgements

This work was supported by the National Research Foundation of Korea (NRF-2016R1C1B2012150), and a basic Grant (K17401) for the K-herb Research Center, Korea Institute of Oriental Medicine.

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Copyright information

© Springer Science+Business Media Dordrecht 2017

Authors and Affiliations

  • Won-Bum Cho
    • 1
  • Eun-Kyeong Han
    • 1
  • Goya Choi
    • 2
  • Jung-Hyun Lee
    • 1
    Email author
  1. 1.Department of Biology EducationChonnam National UniversityGwangjuRepublic of Korea
  2. 2.K-herb Research CenterKorea Institute of Oriental MedicineDaejeonRepublic of Korea

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