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Conservation Genetics Resources

, Volume 9, Issue 2, pp 339–341 | Cite as

Characterization of the complete chloroplast genome of Carpinus tientaiensis

  • Yongzhi Yang
  • Mingcheng Wang
  • Zhiqiang Lu
  • Xiuyue Xie
  • Shuo Feng
Methods and Resources Article

Abstract

The complete chloroplast (cp) genome sequence of a rare xylophyta species, Carpinus tientaiensis, was determined by Illumina pair-end sequencing in this study. The whole cp genome was 160,104 bp in length, containing a large single copy region (LSC) of 91,509 bp and small single copy region (SSC) of 18,974 bp, which were separated by a pair of 26,033 bp and 26,143 bp inverted repeat regions (IRs). The genome contained 114 genes, including 71 protein-coding genes, 36 tRNA genes and 6 ribosomal RNA genes. The majority of these gene species occurred as a single copy and 15 gene species occurred in two copies. The overall AT content of C. tientaiensis chloroplast genome was 63.6%, while the corresponding values of the LSC, SSC and IR regions were 60.7%, 69.8% and 57.5%, respectively. A phylogenetic analysis demonstrated a close relationship between C. tientaiensis and Ostrya rehderiana.

Keywords

Carpinus tientaiensis Chloroplast genome Phylogenetic analysis 

Notes

Acknowledgements

This work was financially supported by the National High Technology Research and Development Program of China (863 Program, No. 2013AA100605), and International Collaboration 111 Projects of China.

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Copyright information

© Springer Science+Business Media Dordrecht 2017

Authors and Affiliations

  1. 1.State Key Laboratory of Grassland Agro-Ecosystem, College of Life ScienceLanzhou UniversityLanzhouChina

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