Conservation Genetics Resources

, Volume 8, Issue 3, pp 343–352 | Cite as

Identifying prey items from New Zealand fur seal (Arctocephalus forsteri) faeces using massive parallel sequencing

  • Arsalan Emami-Khoyi
  • David A. Hartley
  • Adrian M. PatersonEmail author
  • Laura J. Boren
  • Robert H. Cruickshank
  • James G. Ross
  • Elaine C. Murphy
  • Terry-Ann Else
Methods and Resources Article


The New Zealand fur seal (Arctocephalus forsteri) is one of many pinniped species that has shown a remarkable recovery from the brink of extinction after cessation of commercial sealing during the eighteenth and nineteenth centuries. It is commonly believed that this species competes with recreational and commercial fisheries. We identified prey items using massive parallel sequencing from New Zealand fur seal faecal samples that were collected throughout the species distribution. The data support generalist feeding behaviour for this species. The diet composition showed significant geographical and inter-seasonal variation. As many as 46 species of fish and 18 species of cephalopod were identified from a single colony. The data suggest cartilaginous species (sharks, rays, and skates) constitute an important part of the New Zealand fur seal diet. Approximately 10 % of the species identified in the seal diet were of significant commercial value, which indicates some qualitative food competition between New Zealand fur seals and commercial fisheries in exploiting marine species.


New Zealand fur seal Diet Massive parallel sequencing DNA 



The authors are grateful to New Zealand Department of Conservation and its local rangers. The contributions of all local i wi, Ngāi Tahu, Ngāti Mamoe, Ngāti Apa, Ngāti Koata, Ngāti Rārua, Ngāti Tama, Ngāti Kuia, Te Ati Awa, Waitaha, Ngāti Kahungunuki Wairarapa, Taranaki, Ngāti Mutunga, Ngā Ruahine, Ngā Ruanui, Ngā Rauru, and Te Āti Hau, are acknowledged. The contributions of Mehdi Mahjoob for graphical re-creation of the figures are acknowledged. We would also like to thank Thomas A. Gavin, Professor Emeritus, Cornell University, for help with editing. We are thankful to two anonymous reviewers for their constructive comments on the initial version of the manuscript.

Compliance with ethical standards

Conflict of interest

The authors report no conflicts of interest. The authors alone are responsible for the content and writing of the paper. This work was supported by Lincoln University.


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Copyright information

© Springer Science+Business Media Dordrecht 2016

Authors and Affiliations

  • Arsalan Emami-Khoyi
    • 1
  • David A. Hartley
    • 2
  • Adrian M. Paterson
    • 1
    Email author
  • Laura J. Boren
    • 3
  • Robert H. Cruickshank
    • 1
  • James G. Ross
    • 1
    • 4
  • Elaine C. Murphy
    • 1
    • 4
  • Terry-Ann Else
    • 5
  1. 1.Department of EcologyLincoln UniversityLincolnNew Zealand
  2. 2.Micro-Seq EnterprisesLas VegasUSA
  3. 3.New Zealand Department of ConservationWellington-TearoNew Zealand
  4. 4.Centre for Wildlife Management and ConservationLincoln UniversityLincolnNew Zealand
  5. 5.Touro University NevadaHendersonUSA

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