Abstract
We isolated 315 sequences from a Phelsuma guimbeaui microsatellite-enriched genomic library. Primer sets were designed for 44 loci and used to genotype 29 unrelated individuals belonging to a population in the west of Mauritius. All the loci were polymorphic and the number of alleles ranged from 6 to 34. Mean observed and expected heterozygosity varied from 0.29 to 1.00 and 0.48 to 0.97, respectively. Thirteen loci displayed evidence of deviation from Hardy–Weinberg equilibrium, of which 11 also had an estimated null allele frequency ≥10 %. The microsatellite loci will be used to evaluate the population structure and genetic diversity of P. guimbeaui in Mauritius.
References
Armour JAL, Neumann R, Gobert S, Jeffreys AJ (1994) Isolation of human simple repeat loci by hybridization selection. Hum Mol Genet 3:599–605. doi:10.1093/hmg/3.4.599
Austin JJ, Arnold EN, Jones CG (2004) Reconstructing an island radiation using ancient and recent DNA: the extinct and living day geckos (Phelsuma) of the Mascarene islands. Mol Phylog Evol 31:109–122. doi:10.1016/j.ympev.2003.07.011
Cheke A, Hume J (2008) Lost land of the dodo. Poyser, London
Glenn TC, Schable NA (2005) Isolating microsatellite DNA loci. Methods Enzymol 395:202–222. doi:10.1016/S0076-6879(05)95013-1
Hansen D (2006) Ecology, evolution, and conservation of plant–animal interactions on islands. PhD dissertation, University of Zurich
Jones CG (1987) The larger land-birds of Mauritius. In: Diamond AW (ed) Studies of Mascarene island birds. Cambridge University Press, Cambridge, pp 208–300
Kalinowski ST, Wagner AP, Taper ML (2006) ML-RELATE: a computer program for maximum likelihood estimation of relatedness and relationship. Mol Ecol Notes 6:576–579. doi:10.1111/j.1471-8286.2006.01256.x
Kalinowski ST, Taper ML, Marshall TC (2007) Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Mol Ecol 16:1099–1106. doi:10.1111/j.1365-294X.2007.03089.x
Kenta T, Gratten J, Haigh NS, Hinten GN, Slate J, Butlin RK, Burke T (2008) Multiplex SNP-SCALE: a cost-effective medium-throughput single nucleotide polymorphism genotyping method. Mol Ecol Res 8:1230–1238. doi:10.1111/j.1755-0998.2008.02190.x
Nicholls JA, Double MC, Rowell DM, Magrath RD (2000) The evolution of cooperative and pair breeding in thornbills Acanthiza (Pardalotidae). J Avian Biol 31:165–176. doi:10.1034/j.1600-048X.2000.310208.x
Raymond M, Rousset F (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J Heredity 86:248–249. doi:10.1111/j.1471-8286.2007.01931.x
Richardson DS, Jury FL, Blaakmeer K, Komdeur J, Burke T (2001) Parentage assignment and extra-group paternity in a cooperative breeder: the Seychelles warbler (Acrocephalus sechellensis). Mol Ecol 10:2263–2273. doi:10.1046/j.0962-1083.2001.01355.x
Rousset F (2008) GENEPOP’007: a complete re-implementation of the GENEPOP software for Windows and Linux. Mol Ecol Res 8:103–106. doi:10.1111/j.1471-8286.2007.01931.x
Rozen S, Skaletsky HJ (1999) Primer3 on the WWW for general users and for biologist programmers. In: Misener S, Krawetz SA (eds) Bioinformatics methods and protocols. Humana Press, Totowa, New Jersey, pp 365–386
Sasaki T, Takahashi K, Nikaido M, Miura S, Yasukawa Y, Okada N (2004) First application of the SINE (short interspersed repetitive element) method to infer phylogenetic relationships in reptiles: an example from the turtle superfamily Testudinoidea. Mol Biol Evol 21:705–715. doi:10.1093/molbev/msh069
van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4:535–538. doi:10.1111/j.1471-8286.2004.00684.x
Verhoeven KJF, Simonsen KL, McIntyre LM (2005) Implementing false discovery rate control: increasing your power. Oikos 108:643–647. doi:10.1111/j.0030-1299.2005.13727.x
Acknowledgments
This study was funded by the UK Natural Environment Research Council (NERC), University of Bristol, a Rufford Small Grant, Interessengruppe Phelsuma and private sponsors. Mannickchand Puttoo, Vishnuduth Bachraz and Kevin Ruhomaun from the National Parks and Conservation Service (Mauritius) gave constant support during the course of the project. The Mauritian Wildlife Foundation also supplied logistic support and facilities. The laboratory work was conducted at the NERC Biomolecular Analysis Facility at the University of Sheffield. We thank Terry Burke, Clemens Küpper, Cheryl Mills, Ralph Budzinski and Caitriona McInerney for helpful discussions.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Buckland, S., Horsburgh, G.J., Dawson, D.A. et al. Isolation and characterisation of Mauritius lowland day gecko Phelsuma guimbeaui microsatellite loci. Conservation Genet Resour 5, 1013–1018 (2013). https://doi.org/10.1007/s12686-013-9957-x
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s12686-013-9957-x