Abstract
Butler’s Gartersnakes (BGS; Thamnophis butleri) are confined to open and semi-open canopy wetlands and adjacent uplands, habitats under threat of development in Wisconsin. To address issues of species identity and putative hybridization with congeneric snakes, a suite of 18 microsatellite loci capable of cross-species amplification of Plains Gartersnakes (T. radix) and Common Gartersnakes (T. sirtalis) was developed. All loci were polymorphic in BGS with mean number of alleles per locus of 16.11 (range = 3–41) and mean observed heterozygosity of 0.659 (range = 0.311–0.978). Loci amplified efficiently in the congeneric species with high levels of intra- and inter-specific variation. These loci will aid ongoing efforts to effectively identify and manage BGS in Wisconsin.
References
Burghardt GM, Placyk JSJ, Casper GS, Small RL, Taylor K (2006) Genetic structure of Great Lakes region Thamnophis butleri and Thamnophis radix based on mtDNA sequence data: conservation implications for Wisconsin Butler’s Gartersnake. Wisconsin Department of Natural Resources, Madison
Drummond AJ, Ashton B, Buxton S, Cheung M, Cooper A, Duran C, Field M, Heled J, Kearse M, Markowitz S, Moir R, Stones-Havas S, Sturrock S, Thierer T, Wilson A (2010) Geneious v5.3. Biomatters, Ltd. http://www.geneious.com
Fitzpatrick BM, Placyk JS, Niemiller ML, Casper GS, Burghardt GM (2008) Distinctiveness in the face of gene flow: hybridization between specialist and generalist garter snakes. Mol Ecol 17:4107–4117
Glenn TC, Schable NA (2005) Isolating microsatellite DNA loci. Methods Enzymol 395:202–222
Mayer C (2007) Phobos: a tandem repeat search tool. Distributed by the author. http://www.rub.de/spezzoo/cm. Accessed 15 June 2009
McCracken GF, Burghardt GM, Houts SE (1999) Microsatellite markers and multiple paternity in the garter snake Thamnophis sirtalis. Mol Ecol 8:1475–1479
Peakall R, Smouse PE (2006) GENALEX 6: genetic analysis in excel. Population genetic software for teaching and research. Mol Ecol Notes 6:288–295
Rice WR (1989) Analyzing tables of statistical significance. Evolution 43:223–225
Rossman DA, Ford NB, Seigel RA (1996) The garter snakes: evolution and ecology. University of Oklahoma Press, Norman
Rousset F (2008) Genepop’007: a complete reimplementation of the Genepop software for Windows and Linux. Mol Ecol Resour 8:103–106
Rozen S, Skaletsky HJ (2000) Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S (eds) Bioinformatics methods and protocols: methods in molecular biology. Humana Press, Totowa, pp 365–386
Vogt RC (1981) Natural history of amphibians and reptiles of Wisconsin. Milwaukee Public Museum, Milwaukee
Acknowledgments
Use of trade names throughout manuscript does not constitute endorsement by the U.S. Government. We thank the Wisconsin Department of Natural Resources-Bureau of Endangered Resources for funding, and R. Franckowiak, L. Westbrook, R. Andvik, and M. Waterhouse for laboratory assistance. We also acknowledge the contributions of H. Nelson, H. Kaarakka, E. Pelton, B. Poole, A. Drayton, K. McGinley, A. Murphy, B. Jagla, E. Hileman, J. Dare, M. Lundberg, D. Kitchen, R. Henderson, R. King, T. VanDeWalle, D. Mifsud, and J. LeClere.
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Sloss, B.L., Schuurman, G.W., Paloski, R.A. et al. Novel microsatellite loci for studies of Thamnophis Gartersnake genetic identity and hybridization. Conservation Genet Resour 4, 383–386 (2012). https://doi.org/10.1007/s12686-011-9555-8
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DOI: https://doi.org/10.1007/s12686-011-9555-8